Mdo-HB-09-3

Haplotype Block Overview
Name Mdo-HB-09-3
Species Malus x domestica
Stock Haplotype [view all 426]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 25 9
Rome Beauty Law 10 19
Jonafree 10
Redfree 5 9
Spartan 18 8
Wagener 10 9
Worcester Pearmain 2 8
Tsugaru 10 5
Golden Delicious 4 5
Fuji 8 9
Empire 18 8
Gala 5 9
Honeycrisp 10 6
Elstar 5 9
Marshall McIntosh 18 8
Cripps Pink 16 5
Granny Smith 10 16
Jonathan 10 9
Ralls Janet 15 9
Delicious 13 8
Discovery 76 8
Prima 38 5
821 13 20
Fiesta 10 25
Ingrid Marie 25 9
Idared 10
Esopus Spitzenburg 10 9
Braeburn 25 8
Sansa 5 8
Lodi 10 9
James Grieve 25 95
Cripps Red 16 4
Burgundy 10 5
Akane 8 9
Ambrosia 13 4
Aurora Golden Gala 5 8
Beacon 5 6
Ben Davis 4 5 9
Cameo 5 8
Chinook 8 9
Clivia 16 25
Co-op 17 4 9
Co-op 18 38
Dayton 10 9
Delblush 4 9
Delcorf 5
Delorgue 5 9
Dolgo 5
Geheimrat Dr. Oldenburg 16 9
Duchess of Oldenburg 5 6
Early Cortland 10 5 8
Empress 10 18
F2 26829-2-2 20 5
Fantazja 5 8
Fireside 10 5
Fortune 16 5
Frostbite 5 8
Ginger Gold 10 5
GMAL 4327 25 57
GMAL 4328 18 5
GMAL 4329 10 5
GMAL 4332 18 5
Goodland 5 8
Haralson 5 8
Honeygold 4 8
Hudson 8 9
Jersey Black 17 49
Jonamac 10 18
Keepsake 10 8
Kerr 5 8
Lady Williams 16 17
Liberty 18 20
Linda 5 9
Liveland Raspberry 5 69
Longfield 76 91
Macoun 17 18
Malinda 16 8
Melba 18 5
Melrose 8 9
MN 1627 4 6
MN 1628 5 9
MN 1691 5 8
MN 1706 5
MN 1708 6 8
MN 1760 18 68
MN 1764 68 8
MN 1789 5 6
MN 1802 5 8
MN 1836 5 8
MN 1837 5 6
MN 1839 4 5
MN 1888 5 6
MN 1899 5
MN 1940 18 5
MN 2016 5
AA-44 16 4
Monroe 10
Montgomery 10 8
Nicola 8 9
NJ 31 10
NJ 53 10 5
Oriole 5 69
PRI 14-126 4 5
PRI 1661-2 4 8
PRI 54-12 20 5
PRI 855-102 10
Primula 4 5
Raritan 5
Regent 5 8
Russian Seedling 57
Sawa 5 8
Sciros 5 8
Sharon 13 8
Silken 4 5
Wildung 10 13
Splendour 4 8
State Fair 5
NJ 55 5 9
Co-op 29 5 8
Sunrise 5
Sweet Sixteen 10 5
Topaz 5 8
Vista Bella 10 9
Wealthy 10 5
Winesap 8 9
Winter Banana 86 87
Yellow Newtown 16 9
Yellow Transparent 8 9
0407-0001 5 8
0407-0005 5
0407-0006 10 5
0407-0007 10 8
0407-0008 5
0408-0003 5
0408-0004 5
0408-0005 5 8
0408-0007 5 8
0408-0008 8
0408-0010 5
0408-0011 5 8
0408-0014 8
0408-0015 5
0409-0022 10 5
0409-0024 5 6
0409-0028 10 5
0409-0030 10 8
0409-0032 10 5
0409-0035 10 5
0409-0036 6 8
0409-0038 6 8
0409-0039 10 8
0409-0040 10 5
0409-0043 10 8
0409-0045 10 8
0410-0002 10 5
0410-0003 16 8
0410-0005 16 5
0410-0006 16 8
0410-0010 16 5
0410-0011 10 8
0410-0012 16 8
0410-0013 16 5
0410-0015 16 8
0410-0017 16 5
0410-0018 16 5
0414-0010 5 6
0414-0015 10 5
0414-0017 10 6
0414-0018 5 6
0414-0019 10
0414-0020 10 5
0414-0021 10 6
0415-0001 10 5
0415-0004 6 8
0415-0005 5 6
0415-0011 6 8
0415-0012 10 5
0415-0013 10 5
0415-0014 10 6
0415-0016 10 8
0415-0017 5 6
0415-0019 6 8
0415-0020 5 6
0415-0025 10 8
AE_HCxJonf-145 10 6
AE_HCXJonf-148 10
AE_HCxJonf-157 10 6
AE_HCXJonf-162 10 6
AE_HCXJonf-168 5 6
AE_HCxJonf-175 10 6
AE_HCxJonf-183 10
AE_HCxJonf-185 10 6
AE0118-237 6 8
AE0118-238 6 8
AE0118-239 10 5
AE0118-240 10 8
AE0118-243 10 5
AE0118-244 10 5
AE0118-245 5 6
AE0118-246 10 5
AE0118-249 10 8
AE0206-159 5 9
AE0206-160 5 9
AE0206-161 5 8
AE0206-162 5 8
AE0206-163 5 8
AE0206-164 5 9
AE0206-165 5 9
AE0206-167 5 9
AE0206-168 5 9
AE0206-169 5 9
AE0206-170 5 9
AE0210-146 10 5
AE0210-147 10 5
AE0210-149 10 5
AE0210-150 5
AE0210-151 5
AE0210-152 5
AE0210-153 10 5
AE0210-154 10 5
AE0210-157 10 5
AE0210-158 10 5
AE0210-159 5
AE0210-162 10 5
AE0210-163 5
AE0210-164 10 5
AE0210-165 10 5
AE0210-166 5
AE0210-168 10 5
AE0210-169 10 5
AE0210-170 5
AE0210-171 10 5
AE0210-172 10 5
AE0210-173 5
AE0210-174 10 5
AE0213-175 10 5
AE0213-176 10 5
AE0213-177 5
AE0213-178 10 18
AE0213-179 10 5
AE0213-180 10 18
AE0213-181 5
AE0213-182 18 5
AE0213-183 10 18
AE0213-186 5
AE0213-187 10 18
AE0213-190 18 5
AE0213-193 10 18
AE0213-194 10 18
AE0213-195 18 5
AE0213-196 10 5
AE0213-197 10 18
AE0213-198 5 57
AE0213-199 10 18
AE0213-200 10 5
AE0213-201 10 5
AE0213-202 10 18
AE0213-205 10 5
AE0213-206 10 5
AE0251-323 10 9
AE0251-325 10 9
AE0251-327 10 9
AE0251-329 10 9
AE0251-330 5 9
AE0251-331 10 8
AE0251-342 10 9
AE0251-343 5 9
AE0406-239 10 5
AE0406-254 10 4
AE0406-258 4 6
AE0406-259 4 6
AE0406-263 10 5
AE0406-264 10 5
AE0406-266 4 6
AE0406-271 6 8
AE0406-274 5 6
AE0406-278 10 4
AE0406-281 5 6
AE0406-286 10 4
AE0406-288 4 6
AE0406-289 10 5
AE0406-294 10 4
AE0406-298 10 5
Minneiska 5 6
NJ 303955 9
PRI 612-1 4 8
Arlet 10 5
Co-op 39 10
Pinova 16 4
Scired 4 9
Scifresh 5 8
0409-0025 5 6
0409-0026 5 6
0409-0027 10 8
0409-0031 10 5
0409-0033 5 6
0409-0047 10 5
G-14-050 16 9
G-14-052 10 16
G-14-054 4 9
G-14-055 4 9
G-14-056 4 9
G-14-057 16 9
G-14-059 16 9
G-14-060 10 4
G-14-061 10 16
G-14-062 4 9
G-14-064 4 9
G-14-065 16 9
G-14-067 4 9
G-14-068 10 16
G-14-071 4 9
G-14-073 16 9
G-14-074 16 9
G-14-075 4 9
G-14-076 10 16
G-14-077 10 4
G-14-078 10 4
G-14-080 10 16
G-09-232 25 5
G-09-233 5 8
G-09-234 10 8
G-09-235 25 5
G-09-236 5 8
G-09-237 10 25
G-09-239 25 5
G-09-240 10 8
G-09-241 10 25
G-09-242 10 25
G-09-243 5 8
G-09-245 25 5
G-09-246 10 25
G-09-258 25 5
G-09-259 10 8
G-09-260 5 8
G-09-261 25 5
G-09-262 10 8
G-09-263 5 8
G-09-264 5 8
G-09-265 5 8
G-09-266 10 8
G-09-267 10 25
G-09-268 25 5
0408-0021 5
Wijcik McIntosh 84 85
Beauty of Bath 5 76
Priam 4 9
Northern Spy 10 9
Co-op 15 5 8
MN 1702 10 5
WA 2 5 8
WA 5 4 5
Pitmaston Pineapple 8 9
0411-0011 5
0411-0017 5 8
0411-0023 5 8
AE0250-086 10 9
AE0250-087 10 9
AE0250-089 5 9
AE0250-090 10 8
AE0250-092 10 8
AE0250-093 5 9
AE0250-094 5 9
AE0250-095 5 9
Sonya 25 9
Co-op 38 4 5
AE0250-096 10 8
AE0250-327 10 5
Co-op 30 5 8
Jonagrimes 4 5
AE0211-036 10 9
G-07-039 6 8
G-07-041 8
BC-8S-27-43 8 9
AE0250-091 10 57
AE0250-097 10 57
AE0250-325 10 25
AE0250-326 25 6
AE0250-329 25 6
AE0250-333 10 57
AE0250-334 10 57
AE0250-335 10 25
AE0250-336 10 25
AE0250-338 25 6
AE0250-341 57 6
AE0211-038 18 5
AE0211-043 5
AE0211-045 10 5
AE0211-051 5
G-07-010 16 8
G-07-014 16 5
G-07-015 16 5
G-07-019 10 8
G-07-020 10 8
G-07-024 10 8
G-07-032 16 8
G-07-033 16 8
G-07-034 10 8
G-07-035 16 8
G-07-044 16 5
AE0211-053 5
AE0211-054 10 5
AE0250-088 5 6
AE0250-324 10 5
AE0250-328 5 6
AE0250-331 10 5
AE0250-332 5 6
AE0250-337 10 5
AE0250-339 10 5
Minnewashta 5
Autumn Crisp 10 5
G-14-066 10 16
Lu1-11-010 18 9
Lu1-11-013 18 8
Lu1-11-016 8 9
Lu1-11-017 8 9
Lu1-11-018 18 9
NJ 90 10 8
Lord Lambourne 25 8
Antonovka GH 87 88
Grimes Golden 2 4
Kidds Orange Red 13 9
Malus baccata Hansen #2 53 92
Malus baccata Jackii 93
Summerred 18 6
William's Pride 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-3Apple-RosBREED-3.9K-201991.641.96
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091929394959697
GDsnp02013--ABA-ABBBAB--BAB-B----A--A-------ABBABBBA--BB--BBB--BBBBA-BA---BAABBBB-A-BABBABBBABBABBBA-B---B
RosBREEDSNP_SNP_AG_1276715_Lg9_02013_MAF50_1684547_exon1AAABB-BAAABBABABAABABBABBAAABAB--ABAAB--BB--ABBBBABBBABABBAAB-BAABBAABABA-BAAAABBAABBBBBAABB---B
RosBREEDSNP_SNP_AG_1287577_Lg9_02013_MAF20_239644_exon1BAAAAAAABAAAAAAABAA--AAAAAAAABAAB-AABABAAA--BAAAA--AA--A--BAA-AB--AAAAB-A-AA--ABABBAAAABBAAA-A-A
RosBREEDSNP_SNP_AG_1502793_Lg9_01339_MAF40_1648141_exon3BAAAAAAABAAAAAAAABABAAABAAAAAAAAB-AABABAAAAABAAAABAAABAAA-BAB-AA--BAAA--A-AAAABAABAAAABBBBAA---A
RosBREEDSNP_SNP_GA_1273803_Lg9_02013_MAF20_MDP0000312439_exon4BBBBBBABBBABBBBABBBBBABBABBBBBABBBBBBBBBBA--BBAABBBBBBBBBBBBB-BBBAABBBBBABBABBABBBABABBBBBBBA-BA
RosBREEDSNP_SNP_GA_1433030_Lg9_01339_MAF30_MDP0000316472_exon1BBBAB-BABABAAAAABBABABBBBBAAABA---BABBBAABABBAABABABABABABBAB-ABABBBAAB-ABBBABABBABBBAB--AAAB--A
RosBREEDSNP_SNP_TC_1299140_Lg9_02013_MAF10_530534_exon1--AAAAABABAB--AAA-B----AAAAAAAA------AAA--AAAA--BABABABABAAAA---BAAA--A-BAAABAAA--AAAAAAABA-AA-A
RosBREEDSNP_SNP_TC_1312317_Lg9_02013_MAF30_484528_exon1--AAAAAAB--A--AAB-null--AAAAAAAABA---AAB-BAAA-------BnullAnull--AAAB--AAB--AB--B-A-AAABBAABABAAABAAnullnull-A-A
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:1263395..1681448. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation