Mdo-HB-09-27

Haplotype Block Overview
Name Mdo-HB-09-27
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3
Rome Beauty Law 3 4
Jonafree 3 4
Redfree 3 4
Spartan 3 8
Wagener 3
Worcester Pearmain 10 31
Tsugaru 3 4
Golden Delicious 3 4
Fuji 10 8
Empire 3 4
Gala 3 8
Honeycrisp 3 4
Elstar 3
Marshall McIntosh 3
Cripps Pink 3 4
Granny Smith 3
Jonathan 3 4
Ralls Janet 10 7
Delicious 4 8
Discovery 10 3
Prima 4
821 14
Fiesta 3
Ingrid Marie 3
Idared 3
Esopus Spitzenburg 3
Braeburn 3 8
Sansa 10 8
Lodi 4 5
James Grieve 3
Cripps Red 3 4
Burgundy 10 3
Akane 10 4
Ambrosia 3 4
Aurora Golden Gala 3
Beacon 4 5
Ben Davis 3 4 8
Cameo 4
Chinook 4 8
Clivia 10 3
Co-op 17 3 4
Co-op 18 3 4
Dayton 3 4
Delblush 3 4
Delcorf 35 4
Delorgue 4
Dolgo 14 22
Geheimrat Dr. Oldenburg 10 48
Duchess of Oldenburg 4 5
Early Cortland 3 4 8
Empress 3
F2 26829-2-2 14 8
Fantazja 3 4
Fireside 3 4
Fortune 3
Frostbite 4 5
Ginger Gold 3 4
GMAL 4327 16 5
GMAL 4328 3
GMAL 4329 16 5
GMAL 4332 4 5
Goodland 3 4
Haralson 3 5
Honeygold 3
Hudson 3
Jersey Black 3
Jonamac 3
Keepsake 3 5
Kerr 14 3
Lady Williams 3
Liberty 3 8
Linda 4 5
Longfield 3
Macoun 3
Malinda 3 4
Mantet 3
Melba 3
Melrose 4 8
MN 1627 4
MN 1628 3 4
MN 1691 3
MN 1706 4
MN 1708 4 5
MN 1760 4 5
MN 1764 4 5
MN 1789 3 4
MN 1802 3
MN 1836 3 5
MN 1837 3 4
MN 1839 3 4
MN 1888 3 4
MN 1899 4 5
MN 1940 3
MN 2016 3
AA-44 4
Monroe 3
Montgomery 16 4
Nicola 4 8
NJ 31 3
NJ 53 3
Oriole 4 5
PRI 14-126 4 8
PRI 14-510 4 8
PRI 1661-2 3 4
PRI 54-12 4 8
PRI 855-102 4
Primula 3 8
Raritan 3
Regent 3 5
Russian Seedling 14 16
Sawa 3 8
Sciros 3 4
Sharon 3 5
Silken 3 4
Wildung 4 5
Splendour 3 4
State Fair 3 5
NJ 55 3 8
Co-op 29 4
Sunrise 3 4
Sweet Sixteen 3 4
Topaz 3
Vista Bella 3
Wealthy 4 5
Winesap 4
Winter Banana 3 4
Yellow Newtown 3 4
Yellow Transparent 4 5
0407-0001 3 4
0407-0005 3
0407-0006 3
0407-0007 3 4
0407-0008 3 4
0408-0003 3
0408-0004 3
0408-0005 3
0408-0007 3
0408-0008 3
0408-0010 3
0408-0011 3
0408-0014 3
0408-0015 3
0409-0022 3
0409-0024 3 4
0409-0028 3
0409-0030 3 4
0409-0032 3
0409-0035 3
0409-0036 3 4
0409-0038 3 4
0409-0039 3
0409-0040 3
0409-0043 3 4
0409-0045 3 4
0410-0002 3
0410-0003 3
0410-0005 3
0410-0006 3
0410-0010 3
0410-0011 3
0410-0012 3
0410-0013 3
0410-0015 3
0410-0017 3
0410-0018 3
0414-0010 3 4
0414-0015 3 4
0414-0017 3 4
0414-0018 3 4
0414-0019 3
0414-0020 3
0414-0021 4
0415-0001 3
0415-0004 3 4
0415-0005 3 4
0415-0011 3 4
0415-0012 3
0415-0013 3
0415-0014 3 4
0415-0016 3
0415-0017 3
0415-0019 3 4
0415-0020 3 4
0415-0025 3
AE_HCxJonf-145 4
AE_HCxJonf-157 3
AE_HCXJonf-162 3 4
AE_HCXJonf-168 4
AE_HCxJonf-175 3 4
AE_HCxJonf-183 3 4
AE0118-237 4 5
AE0118-238 4 5
AE0118-239 3 4
AE0118-240 3
AE0118-243 3 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4 5
AE0118-249 3
AE0206-159 3
AE0206-160 3
AE0206-161 3
AE0206-162 3 4
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3
AE0206-167 3 4
AE0206-168 3
AE0206-169 3 4
AE0206-170 3 4
AE0210-146 16 3
AE0210-147 4 5
AE0210-149 16 3
AE0210-150 16 4
AE0210-151 16 4
AE0210-152 3
AE0210-153 16 3
AE0210-154 16 4
AE0210-157 3 5
AE0210-158 4 5
AE0210-159 16 3
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 16 3
AE0210-165 16 4
AE0210-166 16 3
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 16 4
AE0210-171 3 5
AE0210-172 16 4
AE0210-173 16 3
AE0210-174 3 5
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 3 5
AE0213-178 4
AE0213-179 4 5
AE0213-180 3 4
AE0213-181 3 5
AE0213-182 4 5
AE0213-183 3 4
AE0213-186 4
AE0213-187 3 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 4
AE0213-196 4 5
AE0213-197 3 4
AE0213-198 16 3
AE0213-199 4 5
AE0213-200 4 5
AE0213-201 4 5
AE0213-202 4 5
AE0213-205 4
AE0213-206 4 5
AE0251-323 3
AE0251-327 3
AE0251-329 3
AE0251-330 3 4
AE0251-331 3 4
AE0251-342 3 4
AE0251-343 3 4
AE0406-239 4
AE0406-254 3
AE0406-258 3
AE0406-259 3
AE0406-263 4
AE0406-264 4
AE0406-266 3 4
AE0406-271 3
AE0406-274 4
AE0406-278 3
AE0406-281 4
AE0406-286 3
AE0406-288 3 4
AE0406-289 3 4
AE0406-294 3
AE0406-298 3
Minneiska 3 4
NJ 303955 8
PRI 612-1 4 8
Arlet 3 4
Co-op 39 3 4
Pinova 3 4
Scired 4 8
Scifresh 3 8
0409-0025 3 4
0409-0026 3
0409-0027 3
0409-0031 3
0409-0033 3 4
0409-0047 3
G-14-050 3 8
G-14-052 3 8
G-14-054 4
G-14-055 4
G-14-056 4 8
G-14-057 3 8
G-14-059 3 8
G-14-060 4
G-14-061 3 4
G-14-062 4 8
G-14-064 3 8
G-14-065 4 8
G-14-069 3 8
G-14-067 4 8
G-14-068 4
G-14-071 4 8
G-14-073 3 8
G-14-074 4 8
G-14-075 4 8
G-14-076 3 8
G-14-077 4
G-14-078 4
G-14-080 3 8
G-09-232 3
G-09-233 3 8
G-09-234 4 8
G-09-235 3
G-09-236 3 8
G-09-237 3 4
G-09-238 3
G-09-239 3
G-09-240 3 8
G-09-241 3
G-09-242 3 4
G-09-243 3 8
G-09-245 3 8
G-09-246 3
G-09-258 3
G-09-259 3 4
G-09-260 3 8
G-09-261 3 4
G-09-262 4 8
G-09-263 3 4
G-09-264 3 8
G-09-265 3 8
G-09-266 3 8
G-09-267 3 8
G-09-268 3
0408-0021 3
Wijcik McIntosh 3
Beauty of Bath 3 43
Priam 4 8
Northern Spy 3
Co-op 15 3 8
MN 1702 4
WA 2 3 4
WA 5 3
Pitmaston Pineapple 22 3
0411-0011 3 4
0411-0017 3 4
0411-0023 3 4
AE0250-086 3
AE0250-087 4
AE0250-089 3 4
AE0250-090 4
AE0250-092 4
AE0250-093 3 4
AE0250-094 3 4
AE0250-095 4
Sonya 3 8
Co-op 38 3 4
AE0250-096 3 4
AE0250-327 3
Co-op 30 3
Jonagrimes 3 5
AE0211-036 4 5
G-07-039 10 4
PRI 14-152 14 4
PRI 47-176 4 8
G-07-041 8
BC-8S-27-43 3 4
AE0250-091 16 4
AE0250-097 16 3
AE0250-325 3 5
AE0250-326 3 5
AE0250-329 4 5
AE0250-333 16 3
AE0250-334 16 3
AE0250-335 3 5
AE0250-336 3 5
AE0250-338 3 5
AE0250-341 16 4
AE0211-038 3
AE0211-043 3
AE0211-045 3 4
AE0211-051 3
G-07-010 3 8
G-07-014 10 3
G-07-015 3 8
G-07-019 10 3
G-07-020 10 3
G-07-024 10 3
G-07-032 10 3
G-07-033 3 8
G-07-034 3 8
G-07-035 10 3
G-07-044 3 8
AE0211-053 3
AE0211-054 3
AE0250-088 3
AE0250-324 3 4
AE0250-328 3 4
AE0250-331 3
AE0250-332 3 4
AE0250-337 3 4
AE0250-339 3 4
Minnewashta 3
Autumn Crisp 3 4
G-14-066 3 8
Lu1-11-010 10 8
Lu1-11-013 8
Lu1-11-016 10 3
Lu1-11-017 10 8
Lu1-11-018 3 8
NJ 90 4 8
Lord Lambourne 10 3
Antonovka GH 10 48
Grimes Golden 3
Kidds Orange Red 3 8
Malus baccata Hansen #2 3 49
Malus baccata Jackii 12
Summerred 3 50
William's Pride 3 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-27Apple-RosBREED-3.9K-2019926.4826.48
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152
GDsnp00331BBAB-ABAA-B-BBBAB---BBBABBBBBBAB---BBABABBABBABAB--
RosBREEDSNP_SNP_AC_12845175_Lg9_00331_MAF20_267702_exon2AAAB-ABBBAAAABABA--AB--BABAABABB---BBAAAAABAAABABB-
RosBREEDSNP_SNP_AG_12880004_Lg9_00331_MAF10_1627920_exon2AAAAAABAAAAAABAAAAAAAAAAAAAAA--A--BAAAAA------AA-BB
RosBREEDSNP_SNP_CA_12886110_Lg9_00331_MAF10_505681_exon2BBBA-BBAAB--ABBBAABBBBBABAB----B---AABAB--ABBBBA-BB
RosBREEDSNP_SNP_GA_12825468_Lg9_00331_MAF30_1670288_exon2BBBA-BAAABBBBABAB--BABABA----BAA---ABABABBABBBABAA-
RosBREEDSNP_SNP_TC_12849756_Lg9_00331_MAF20_267702_exon1-AAB--B-BAA-A-nullAB---B--BABAAB---Anull--AB-AAnullBA--AABB-
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:12525213..12576707. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation