Mdo-HB-09-25

Haplotype Block Overview
Name Mdo-HB-09-25
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 4 7
Jonafree 4 8
Redfree 11 4
Spartan 4 8
Wagener 7 8
Worcester Pearmain 5
Tsugaru 4
Golden Delicious 4
Fuji 4 8
Empire 4
Gala 4 8
Honeycrisp 4 8
Elstar 4 5
Marshall McIntosh 4 7
Cripps Pink 4
Granny Smith 4 7
Jonathan 4 7
Ralls Janet 3 4
Delicious 4 8
Prima 4 7
821 8
Fiesta 5 7
Ingrid Marie 5
Idared 7
Esopus Spitzenburg 5 7
Braeburn 5 8
Sansa 5 8
Lodi 4 5
James Grieve 5 7
Cripps Red 4
Burgundy 5 7
Akane 4 5
Ambrosia 4
Aurora Golden Gala 4
Beacon 20 21
Ben Davis 4 8
Cameo 4
Chinook 4 8
Clivia 5
Co-op 17 4 7
Co-op 18 32 33
Dayton 4 5 7
Delblush 4
Delorgue 4
Dolgo 24 5
Geheimrat Dr. Oldenburg 5 7
Duchess of Oldenburg 4 5
Early Cortland 4
Empress 4 5
F2 26829-2-2 8
Fantazja 7
Fireside 4
Fortune 5 7
Frostbite 4 7
Ginger Gold 4
GMAL 4327 5 7
GMAL 4328 11 7
GMAL 4329 5 7
GMAL 4332 5 7
Goodland 11 4
Haralson 5 8
Honeygold 4 8
Hudson 4 7
Jersey Black 3 4
Jonamac 4 7
Keepsake 7 8
Kerr 24 8
Lady Williams 4
Liberty 4 8
Linda 5 7
Liveland Raspberry 11 4
Longfield 11 7
Macoun 4
Malinda 7 8
Mantet 17 4
Melba 11 4
Melrose 4 8
MN 1627 4
MN 1628 4 8
MN 1691 11 4
MN 1706 4
MN 1708 4 7
MN 1760 7
MN 1764 5 7
MN 1789 11 4
MN 1802 7 8
MN 1836 4 7
MN 1837 11 4
MN 1839 4 5
MN 1888 4
MN 1899 4 5
MN 1940 11 4
MN 2016 4
AA-44 4 7
Monroe 7
Montgomery 4
Nicola 4 8
NJ 31 8
NJ 53 7
Oriole 4 5
PRI 14-126 4 8
PRI 14-510 4 8
PRI 16-144 4 8
PRI 1661-2 4 7
PRI 54-12 4 8
PRI 855-102 4
Primula 11 4
Raritan 36 37
Regent 5 7
Russian Seedling 3
Sawa 4 7
Sciros 4
Sharon 5 7
Silken 4 8
Wildung 4 5
Splendour 4
State Fair 4 5
NJ 55 4
Co-op 29 4
Sunrise 11 4
Sweet Sixteen 4 8
Topaz 4 5
Vista Bella 5 7
Wealthy 4 5
Winesap 4
Winter Banana 4 7
Yellow Newtown 21 38
Yellow Transparent 5
0407-0001 4
0407-0005 4 7
0407-0006 4 7
0407-0007 4
0407-0008 4
0408-0003 4 5
0408-0004 4 7
0408-0005 4 7
0408-0007 4 7
0408-0008 4 5
0408-0010 4 7
0408-0011 4 5
0408-0014 4 7
0408-0015 4 7
0409-0022 4 8
0409-0024 4
0409-0028 4 8
0409-0030 4
0409-0032 4 8
0409-0035 4 8
0409-0036 4
0409-0038 4
0409-0039 4 8
0409-0040 4 8
0409-0043 4 8
0409-0045 4
0410-0002 4
0410-0003 4
0410-0005 4
0410-0006 4 7
0410-0010 4
0410-0011 4 7
0410-0012 4
0410-0013 4
0410-0015 4 7
0410-0017 4
0410-0018 4 7
0414-0010 4 8
0414-0015 4 8
0414-0017 4 7
0414-0018 4 5
0414-0019 7 8
0414-0020 5 8
0414-0021 4
0415-0001 5 8
0415-0004 4 7
0415-0005 4 5
0415-0011 4 7
0415-0012 7 8
0415-0013 5 8
0415-0014 4 7
0415-0016 7 8
0415-0017 5 8
0415-0019 4 7
0415-0020 4 7
0415-0025 5 8
AE_HCxJonf-145 4
AE_HCXJonf-148 4 8
AE_HCxJonf-157 8
AE_HCXJonf-162 4 8
AE_HCXJonf-168 4
AE_HCxJonf-175 4 8
AE_HCxJonf-183 4 8
AE_HCxJonf-185 4
AE0118-237 4 5
AE0118-238 4 5
AE0118-239 4 8
AE0118-240 7 8
AE0118-243 5 8
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4 5
AE0118-249 7 8
AE0206-159 4
AE0206-160 4
AE0206-161 4
AE0206-162 4
AE0206-163 11 4
AE0206-164 11 4
AE0206-165 11 4
AE0206-167 11 4
AE0206-168 11 4
AE0206-169 4
AE0206-170 4
AE0210-146 11 7
AE0210-147 4 5
AE0210-149 11 7
AE0210-150 4 7
AE0210-151 4 7
AE0210-152 11 4
AE0210-153 11 7
AE0210-154 4 7
AE0210-157 11 5
AE0210-158 4 5
AE0210-159 11 7
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 11 7
AE0210-165 4 7
AE0210-166 11 7
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 7
AE0210-171 11 5
AE0210-172 4 7
AE0210-173 11 7
AE0210-174 11 5
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 4 7
AE0213-179 4 5
AE0213-180 4 7
AE0213-181 4 5
AE0213-182 4 5
AE0213-183 4 7
AE0213-186 4 7
AE0213-187 4 7
AE0213-190 4 7
AE0213-193 4 7
AE0213-194 4 7
AE0213-195 4 7
AE0213-196 4 5
AE0213-197 4 7
AE0213-198 4 7
AE0213-199 4 7
AE0213-200 4 5
AE0213-201 4 5
AE0213-202 4 5
AE0213-205 4 7
AE0213-206 4 5
AE0251-323 4 8
AE0251-325 4
AE0251-327 4 8
AE0251-329 4 8
AE0251-330 4
AE0251-331 4 8
AE0251-342 4 8
AE0251-343 4
AE0406-239 4
AE0406-254 8
AE0406-258 4 8
AE0406-259 4 8
AE0406-263 4
AE0406-264 4
AE0406-266 4 8
AE0406-271 8
AE0406-274 4
AE0406-278 8
AE0406-281 4
AE0406-286 8
AE0406-288 4 8
AE0406-289 4 8
AE0406-294 8
AE0406-298 8
Minneiska 11 4
NJ 303955 4
PRI 612-1 4 8
Arlet 4 7
Co-op 39 4 7
Pinova 4 5
Scired 4 8
Scifresh 4 8
0409-0025 4
0409-0026 4 8
0409-0027 4 8
0409-0031 4 8
0409-0033 4
0409-0047 4 8
G-14-050 5 8
G-14-052 5 8
G-14-054 4
G-14-055 4
G-14-056 4 8
G-14-057 5 8
G-14-059 5 8
G-14-060 4
G-14-061 4 5
G-14-062 4 8
G-14-064 5 8
G-14-065 4 8
G-14-069 5 8
G-14-067 4 8
G-14-068 4
G-14-071 4 8
G-14-073 5 8
G-14-074 4 8
G-14-075 4 8
G-14-076 5 8
G-14-077 4
G-14-078 4
G-14-080 5 8
G-09-232 4 5
G-09-233 4 8
G-09-234 4 8
G-09-235 4 5
G-09-236 4 8
G-09-237 4 5
G-09-238 4 5
G-09-239 4 5
G-09-240 4 8
G-09-241 4 5
G-09-242 4 5
G-09-243 4 8
G-09-245 4 8
G-09-246 4 5
G-09-258 4 5
G-09-259 4 5
G-09-260 4 8
G-09-261 4 5
G-09-262 4 8
G-09-263 4 5
G-09-264 4 8
G-09-265 4 8
G-09-266 4 8
G-09-267 4 8
G-09-268 4 5
0408-0021 4 7
Wijcik McIntosh 4 7
Priam 4
Northern Spy 7 8
Co-op 15 11 8
MN 1702 4
WA 2 4
WA 5 11 4
Pitmaston Pineapple 5
0411-0011 4 5
0411-0017 4 7
0411-0023 4 7
AE0250-086 4 8
AE0250-087 4
AE0250-089 4
AE0250-090 4
AE0250-092 4
AE0250-093 4 8
AE0250-094 4
AE0250-095 4
Sonya 5 8
Co-op 38 4
AE0250-096 4
AE0250-327 4 7
Co-op 30 5 7
Jonagrimes 3 5
AE0211-036 4 5
G-07-039 4 5
PRI 14-152 4 8
PRI 47-176 4 8
G-07-041 8
BC-8S-27-43 4
AE0250-091 4 7
AE0250-097 7 8
AE0250-325 5 8
AE0250-326 5 8
AE0250-329 4 5
AE0250-333 7 8
AE0250-334 7 8
AE0250-335 5 8
AE0250-336 5 8
AE0250-338 5 8
AE0250-341 4 7
AE0211-038 11 4
AE0211-043 4 7
AE0211-045 4 7
AE0211-051 11 4
G-07-010 4 8
G-07-014 4 5
G-07-015 7 8
G-07-019 5 7
G-07-020 5 7
G-07-024 5 7
G-07-032 4 5
G-07-033 4 8
G-07-034 4 8
G-07-035 4 5
G-07-044 4 8
AE0211-053 4
AE0211-054 4
AE0250-088 4
AE0250-324 4
AE0250-328 11 4
AE0250-331 4 8
AE0250-332 11 4
AE0250-337 11 4
AE0250-339 11 4
Minnewashta 11 4
Autumn Crisp 4 7
G-14-066 5 8
Lu1-11-010 4
Lu1-11-013 4 8
Lu1-11-016 4 7
Lu1-11-017 4
Lu1-11-018 4 7
NJ 90 4 8
Lord Lambourne 5
Antonovka GH 5 8
Grimes Golden 3 4
Kidds Orange Red 5 8
Malus baccata Hansen #2 20 33
Malus baccata Jackii 39
Summerred 19 4
William's Pride 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-25Apple-RosBREED-3.9K-2019923.9323.93
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839
RosBREEDSNP_SNP_AG_11723269_Lg9_01755_MAF20_580362_exon1--AAAAAAABA-AAAB--AA--A--BAA--AAAAABAA
RosBREEDSNP_SNP_AG_11731639_Lg9_01755_MAF40_1652052_exon2AAAB-ABABAAB-BA-ABABABB----BABABBAABAB
RosBREEDSNP_SNP_CA_11719235_Lg9_01755_MAF20_45574_exon1BBBA-BBBBBBABBAB--ABABABA--B--BBBABAAA
RosBREEDSNP_SNP_GA_11726505_Lg9_01755_MAF30_1681471_exon1BABBBAB--ABB-BB-BBBBBAB----ABBBBBBBAAB
RosBREEDSNP_SNP_GA_11729185_Lg9_01755_MAF40_508139_exon1BBBA-BABAB-A--B-BAABBAA----AABABABBAA-
RosBREEDSNP_SNP_TC_11711622_Lg9_01755_MAF30_1643950_exon1AAAB-AAAAAABAABA--ABABAAB--A--AABABAAA
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:11398910..11418937. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation