Mdo-HB-09-23

Haplotype Block Overview
Name Mdo-HB-09-23
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10
Rome Beauty Law 3
Jonafree 3 6
Redfree 3
Spartan 3
Wagener 3 6
Worcester Pearmain 2 4
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3
Empire 3
Gala 3
Honeycrisp 3 6
Elstar 10 3
Marshall McIntosh 3
Cripps Pink 3 4
Granny Smith 3
Jonathan 3
Ralls Janet 3
Delicious 3
Prima 3 4
821 4 6
Fiesta 10 3
Ingrid Marie 10
Idared 3
Esopus Spitzenburg 10 3
Braeburn 10 3
Sansa 3 4
Lodi 3 4
James Grieve 10 3
Cripps Red 3 4
Burgundy 3 4
Akane 3 4
Ambrosia 3
Aurora Golden Gala 3
Beacon 12 6
Ben Davis 3
Cameo 3 4
Chinook 3
Clivia 10 4
Co-op 17 3
Co-op 18 3 6
Dayton 3 4
Delblush 3
Delcorf 15 4
Delorgue 3 4
Dolgo 6 9
Geheimrat Dr. Oldenburg 3 4
Duchess of Oldenburg 3 4
Early Cortland 3
Empress 3 4
F2 26829-2-2 3 4
Fantazja 3
Fireside 3 6
Fortune 10 3
Frostbite 3
Ginger Gold 3
GMAL 4327 3 4
GMAL 4328 3 4
GMAL 4329 3 4
GMAL 4332 3 4
Goodland 3
Haralson 4 6
Honeygold 3 6
Hudson 3
Jersey Black 3
Jonamac 3
Keepsake 3 6
Kerr 6
Lady Williams 3
Liberty 3
Linda 3 4
Longfield 3 6
Macoun 3
Malinda 3 6
Melba 3
Melrose 3
MN 1627 3
MN 1628 3 6
MN 1691 3 6
MN 1706 3
MN 1708 3
MN 1760 3
MN 1764 3 4
MN 1789 3 6
MN 1802 3 6
MN 1836 10 3
MN 1837 3
MN 1839 3 4
MN 1888 3 6
MN 1899 3 4
MN 1940 3
MN 2016 10 4
AA-44 3
Monroe 3
Montgomery 3
Nicola 3
NJ 31 3 6
NJ 53 3
Oriole 3 4
PRI 14-126 3
PRI 14-510 3 4
PRI 1661-2 3
PRI 54-12 3
PRI 855-102 3
Primula 3
Raritan 12 6
Regent 3 4
Russian Seedling 3
Sawa 3
Sciros 3
Sharon 3 4
Silken 4 6
Wildung 3 4
Splendour 3
State Fair 10 4
NJ 55 10 3
Co-op 29 4
Sunrise 3 4
Sweet Sixteen 3 6
Topaz 10 3
Vista Bella 3 4
Wealthy 3 4
Winesap 3
Winter Banana 3 4
Yellow Newtown 18 4
Yellow Transparent 4
0407-0001 3 4
0407-0005 3
0407-0006 3
0407-0007 3 4
0407-0008 3 4
0408-0003 3
0408-0004 3
0408-0005 3
0408-0007 3
0408-0008 3
0408-0010 3
0408-0011 3
0408-0014 3
0408-0015 3
0409-0022 3 6
0409-0024 3
0409-0028 3 6
0409-0030 3
0409-0032 3 6
0409-0035 3 6
0409-0036 3
0409-0038 3
0409-0039 3 6
0409-0040 3 6
0409-0043 3 6
0409-0045 3
0410-0002 3
0410-0003 3
0410-0005 3
0410-0006 3
0410-0010 3
0410-0011 3
0410-0012 3
0410-0013 3
0410-0015 3
0410-0017 3
0410-0018 3
0414-0010 4 6
0414-0015 4 6
0414-0017 3
0414-0018 3
0414-0019 3 6
0414-0020 3 6
0414-0021 3 4
0415-0001 3 6
0415-0004 3
0415-0005 3
0415-0011 3
0415-0012 3 6
0415-0013 3 6
0415-0014 3
0415-0016 3 6
0415-0017 3 6
0415-0019 3
0415-0020 3
0415-0025 3 6
AE_HCxJonf-145 3
AE_HCXJonf-148 3 6
AE_HCxJonf-157 6
AE_HCXJonf-162 3 6
AE_HCXJonf-168 3 4
AE_HCxJonf-175 3 6
AE_HCxJonf-183 3 6
AE_HCxJonf-185 3
AE0118-237 3 4
AE0118-238 3 4
AE0118-239 3 6
AE0118-240 3 6
AE0118-243 4 6
AE0118-244 3 4
AE0118-245 3 4
AE0118-246 3 4
AE0118-249 3 6
AE0206-159 10 3
AE0206-160 10 3
AE0206-161 10 3
AE0206-162 10 3
AE0206-163 3
AE0206-164 3
AE0206-165 3
AE0206-167 3
AE0206-168 3
AE0206-169 10 3
AE0206-170 10 3
AE0210-146 3
AE0210-147 4
AE0210-149 3
AE0210-150 3 4
AE0210-151 3 4
AE0210-152 10 3
AE0210-153 3
AE0210-154 3 4
AE0210-157 3 4
AE0210-158 4
AE0210-159 3
AE0210-162 4
AE0210-163 4
AE0210-164 3
AE0210-165 3 4
AE0210-166 3
AE0210-168 4
AE0210-169 4
AE0210-170 3 4
AE0210-171 3 4
AE0210-172 3 4
AE0210-173 3
AE0210-174 3 4
AE0213-175 3 4
AE0213-176 3 4
AE0213-177 3 4
AE0213-178 3
AE0213-179 3 4
AE0213-180 3
AE0213-181 3 4
AE0213-182 3 4
AE0213-183 3
AE0213-186 3
AE0213-187 3
AE0213-190 3
AE0213-193 3
AE0213-194 3
AE0213-195 3
AE0213-196 3 4
AE0213-197 3
AE0213-198 3
AE0213-199 3
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 3 4
AE0213-205 3
AE0213-206 3 4
AE0251-323 3 6
AE0251-325 3
AE0251-327 3 6
AE0251-329 3 6
AE0251-330 3
AE0251-331 3 6
AE0251-342 3 6
AE0251-343 3
AE0406-239 4 6
AE0406-254 6
AE0406-258 3 6
AE0406-259 3 6
AE0406-263 3 4
AE0406-264 3 4
AE0406-266 3 6
AE0406-271 6
AE0406-274 3 4
AE0406-278 6
AE0406-281 3 4
AE0406-286 6
AE0406-288 3 6
AE0406-289 4 6
AE0406-294 6
AE0406-298 6
Minneiska 3
NJ 303955 10
PRI 612-1 3
Arlet 3 4
Co-op 39 3
Pinova 4
Scired 3
Scifresh 3
0409-0025 3
0409-0026 3 6
0409-0027 3 6
0409-0031 3 6
0409-0033 3
0409-0047 3 6
G-14-050 3 4
G-14-052 3 4
G-14-054 4
G-14-055 4
G-14-056 3 4
G-14-057 3 4
G-14-059 3 4
G-14-060 4
G-14-061 4
G-14-062 3 4
G-14-064 3 4
G-14-065 3 4
G-14-069 3 4
G-14-067 3 4
G-14-068 4
G-14-071 3 4
G-14-073 3 4
G-14-074 3 4
G-14-075 3 4
G-14-076 3 4
G-14-077 4
G-14-078 4
G-14-080 3 4
G-09-232 10 3
G-09-233 3
G-09-234 3
G-09-235 10 3
G-09-236 3
G-09-237 10 3
G-09-238 10 3
G-09-239 10 3
G-09-240 3
G-09-241 10 3
G-09-242 10 3
G-09-243 3
G-09-245 3
G-09-246 10 3
G-09-258 10 3
G-09-259 10 3
G-09-260 3
G-09-261 10 3
G-09-262 3
G-09-263 10 3
G-09-264 3
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 10 3
0408-0021 3
Wijcik McIntosh 3
Beauty of Bath 20
Priam 3
Northern Spy 3 6
Co-op 15 3
MN 1702 3
WA 2 3
WA 5 3
Pitmaston Pineapple 10 4
0411-0011 3
0411-0017 3 4
0411-0023 3 4
AE0250-086 3 6
AE0250-087 3
AE0250-089 3
AE0250-090 3
AE0250-092 3
AE0250-093 3 6
AE0250-094 3
AE0250-095 3
Sonya 10 3
Co-op 38 3 4
AE0250-096 3 6
AE0250-327 3 6
Co-op 30 3
Jonagrimes 3 4
AE0211-036 3 4
G-07-039 3 4
PRI 14-152 4
PRI 47-176 3
G-07-041 3
BC-8S-27-43 3
AE0250-091 3
AE0250-097 3 6
AE0250-325 4 6
AE0250-326 3 4
AE0250-329 3 4
AE0250-333 3 6
AE0250-334 3 6
AE0250-335 4 6
AE0250-336 4 6
AE0250-338 4 6
AE0250-341 3
AE0211-038 3
AE0211-043 3 4
AE0211-045 3 4
AE0211-051 3
G-07-010 3
G-07-014 3 4
G-07-015 3
G-07-019 3 4
G-07-020 3 4
G-07-024 3 4
G-07-032 3 4
G-07-033 3
G-07-034 3
G-07-035 3 4
G-07-044 3
AE0211-053 10 3
AE0211-054 10 3
AE0250-088 10 3
AE0250-324 10 3
AE0250-328 3
AE0250-331 10 6
AE0250-332 3
AE0250-337 3
AE0250-339 3
Minnewashta 10 3
Autumn Crisp 3 4
G-14-066 3 4
Lu1-11-010 10 3
Lu1-11-013 10 3
Lu1-11-016 3
Lu1-11-017 10 3
Lu1-11-018 3
NJ 90 3
Lord Lambourne 10 4
Antonovka GH 4
Grimes Golden 3
Kidds Orange Red 10 3
Malus baccata Hansen #2 3 6
Malus baccata Jackii 6
Summerred 12 6
William's Pride 3 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-23Apple-RosBREED-3.9K-2019920.6321.08
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920
GDsnp02031AAB-BABBBBAA--BAA--
RosBREEDSNP_SNP_GA_10025924_Lg9_02031_MAF30_1681985_exon3-BA-B--AA-A-ABBBBAB
RosBREEDSNP_SNP_TC_10002102_Lg9_02031_MAF30_1658767_exon1-AAAAAA-B-AB----BAA
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:10333982..10358198. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation