Mdo-HB-09-22

Haplotype Block Overview
Name Mdo-HB-09-22
Species Malus x domestica
Stock Haplotype [view all 388]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 8
Rome Beauty Law 3
Jonafree 3 5
Redfree 11 4
Spartan 3 4
Wagener 11 5
Worcester Pearmain 10 39
Tsugaru 4 7
Golden Delicious 3 4
Fuji 3 4
Empire 3 8
Gala 3 4
Honeycrisp 3 5
Elstar 4 8
Marshall McIntosh 3
Cripps Pink 3 4
Granny Smith 3 5
Jonathan 3 7
Ralls Janet 3 9
Delicious 4 8
Prima 3 4
821 5
Fiesta 10 7
Ingrid Marie 10 8
Idared 5 7
Esopus Spitzenburg 7 8
Braeburn 10 4
Sansa 10 4
Lodi 3 5
James Grieve 10 20
Burgundy 10 3
Akane 10 3
Ambrosia 3 8
Aurora Golden Gala 3 8
Beacon 11 4
Ben Davis 3 4 5 8
Cameo 4 8
Chinook 4 8
Clivia 10 4
Co-op 17 3
Co-op 18 3 5
Dayton 3 5 7
Delblush 3 8
Delorgue 3 4
Dolgo 5 9
Geheimrat Dr. Oldenburg 12 4
Duchess of Oldenburg 3 5
Early Cortland 3 5
Empress 3 5
F2 26829-2-2 4 5
Fantazja 3 4
Fireside 3 5
Fortune 5 8
Frostbite 3 7
Ginger Gold 3
GMAL 4327 5 7
GMAL 4328 4 5
GMAL 4329 5 7
GMAL 4332 4 5
Goodland 3
Haralson 5 7
Honeygold 3 7
Hudson 3 8
Jersey Black 3 9
Jolana 39 4
Jonamac 3 7
Keepsake 5 7
Kerr 5 7
Lady Williams 3 5
Liberty 3 4
Linda 4 5
Liveland Raspberry 3 9
Longfield 34 5
Macoun 3
Malinda 3 7
Mantet 8
Melba 3 9
Melrose 3 4
MN 1628 3 5
MN 1691 3 5
MN 1706 11 4
MN 1708 3 7
MN 1760 3 7
MN 1764 3
MN 1789 3 5
MN 1802 3 5
MN 1836 7 8
MN 1837 3
MN 1839 3 5
MN 1888 3 5
MN 1899 3 5
MN 1940 3
MN 2016 4 8
AA-44 3 7
Monroe 3 7
Montgomery 3
Nicola 4 8
NJ 53 3
Oriole 3 5
PCF-3-120 3 4
PRI 14-126 3 4
PRI 14-510 4
PRI 1661-2 3 8
PRI 54-12 3 4
Primula 3 9
Raritan 32 4
Regent 3 5
Russian Seedling 4
Sawa 3
Sciros 3 8
Sharon 3 5
Silken 4 7
Wildung 3 5
Splendour 3 8
State Fair 5 8
NJ 55 3 8
Co-op 29 3 4
Sunrise 4 7
Sweet Sixteen 3 5
Topaz 10 4
Vista Bella 3 5
Wealthy 3 5
Winesap 3 8
Winter Banana 3 4
Yellow Newtown 3 8
Yellow Transparent 10 5
0407-0001 4 8
0409-0045 3
0410-0006 3 8
0410-0017 5 8
0414-0010 4 5
0414-0015 4 5
0414-0017 3 5
0414-0018 3
0414-0019 5
0415-0001 3 5
0415-0004 3
0415-0005 3
0415-0011 3
0415-0012 3 5
0415-0013 3 5
0415-0014 3 7
0415-0016 3 5
0415-0017 3 5
0415-0019 3
0415-0020 3
0415-0025 3 5
AE_HCxJonf-145 3
AE_HCXJonf-148 3 5
AE_HCxJonf-157 5
AE_HCXJonf-162 3 5
AE_HCXJonf-168 3 4
AE_HCxJonf-175 3 5
AE_HCxJonf-183 3 5
AE_HCxJonf-185 3
AE0118-237 3 5
AE0118-238 3 5
AE0118-239 3 5
AE0118-240 3 5
AE0118-243 5
AE0118-244 3 5
AE0118-245 3 5
AE0118-246 3 5
AE0118-249 3 5
AE0206-159 4 8
AE0206-160 4 8
AE0206-161 8
AE0206-162 8
AE0206-163 3 8
AE0206-164 3 8
AE0206-165 3 4
AE0206-167 3 4
AE0206-168 3 4
AE0206-169 8
AE0206-170 8
AE0210-146 7
AE0210-147 4 5
AE0210-149 7
AE0210-150 4 7
AE0210-151 4 7
AE0210-152 7 8
AE0210-153 7
AE0210-154 4 7
AE0210-157 5 7
AE0210-158 4 5
AE0210-159 7
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 7
AE0210-165 4 7
AE0210-166 7
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 7
AE0210-171 5 7
AE0210-172 4 7
AE0210-173 7
AE0210-174 5 7
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 3 5
AE0213-178 3 4
AE0213-179 3 5
AE0213-180 3 4
AE0213-181 3 5
AE0213-182 3 5
AE0213-183 3 4
AE0213-186 3 4
AE0213-187 3 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3 4
AE0213-196 3 5
AE0213-197 3 4
AE0213-198 3 7
AE0213-199 3 4
AE0213-200 3 5
AE0213-201 3 5
AE0213-202 3 5
AE0213-205 3 4
AE0213-206 3 5
AE0251-323 4 5
AE0251-325 3 8
AE0251-327 4 5
AE0251-329 4 5
AE0251-330 3 4
AE0251-331 5 8
AE0251-342 5 8
AE0251-343 3 4
AE0406-239 4 5
AE0406-254 5 7
AE0406-258 3 7
AE0406-259 3 7
AE0406-263 3 4
AE0406-264 3 4
AE0406-266 3 7
AE0406-271 5 7
AE0406-274 3 4
AE0406-278 5 7
AE0406-281 3 4
AE0406-286 5 7
AE0406-288 3 7
AE0406-289 4 5
AE0406-294 5 7
AE0406-298 5 7
Minneiska 3
PRI 612-1 4 8
Arlet 4 5
Co-op 39 3 7
Pinova 4
Scired 3 4
Scifresh 3 4
0409-0025 3
0409-0026 5 8
0409-0027 3 5
0409-0031 3 5
0409-0033 3
0409-0047 5 8
G-14-050 4
G-14-052 4
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 4
G-14-059 4
G-14-060 4
G-14-061 4
G-14-062 4
G-14-064 4
G-14-065 4
G-14-069 4
G-14-067 4
G-14-068 4
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4
G-14-076 4
G-14-077 4
G-14-078 4
G-14-080 4
G-09-232 10 3
G-09-233 3 4
G-09-234 3 4
G-09-235 10 3
G-09-236 3 4
G-09-237 10 3
G-09-238 10 3
G-09-239 10 3
G-09-240 3 4
G-09-241 10 3
G-09-242 10 3
G-09-243 3 4
G-09-245 3 4
G-09-246 10 3
G-09-258 10 3
G-09-259 10 3
G-09-260 3 4
G-09-261 10 3
G-09-262 3 4
G-09-263 10 3
G-09-264 3 4
G-09-265 3 4
G-09-266 3 4
G-09-267 3 4
G-09-268 10 3
Wijcik McIntosh 3
Beauty of Bath 27 40
Priam 3
Northern Spy 3 5
Co-op 15 4 7
MN 1702 3
WA 2 3 8
WA 5 3 7
Pitmaston Pineapple 3 8
0411-0023 3 4
AE0250-086 4 5
AE0250-087 3 8
AE0250-089 3 4
AE0250-090 3 8
AE0250-092 3 8
AE0250-093 5 8
AE0250-094 3 4
AE0250-095 3 4
Sonya 10 4
Co-op 38 3 4
AE0250-096 3 5
AE0250-327 5 7
Co-op 30 3
Jonagrimes 3 5
AE0211-036 3 5
G-07-039 10 3
PRI 14-152 4 5
PRI 47-176 3 4
G-07-041 4
BC-8S-27-43 4 8
AE0250-091 3 7
AE0250-097 5 7
AE0250-325 5
AE0250-326 3 5
AE0250-329 3 5
AE0250-333 5 7
AE0250-334 5 7
AE0250-335 5
AE0250-336 5
AE0250-338 5
AE0250-341 3 7
AE0211-038 3 4
AE0211-043 3 5
AE0211-045 3 5
AE0211-051 3 4
G-07-010 4 5
G-07-014 10 5
G-07-019 10 3
G-07-020 10 3
G-07-024 10 3
G-07-032 10 5
G-07-033 4 5
G-07-034 4 5
G-07-035 10 5
G-07-044 4 5
AE0211-053 3 8
AE0211-054 3 8
AE0250-088 3 8
AE0250-324 3 8
AE0250-328 3
AE0250-331 5 8
AE0250-332 3
AE0250-337 3
AE0250-339 3 8
Minnewashta 3 8
Autumn Crisp 3 4
G-14-066 4
Lu1-11-010 3 8
Lu1-11-013 4 8
Lu1-11-016 3
Lu1-11-017 4 8
Lu1-11-018 3
NJ 90 3 4
Lord Lambourne 10
Antonovka GH 33
Grimes Golden 3
Kidds Orange Red 4 8
Malus baccata Hansen #2 3 5
Malus baccata Jackii 5
Summerred 27 3
William's Pride 3 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-22Apple-RosBREED-3.9K-2019918.5518.74
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940
RosBREEDSNP_SNP_AC_8273556_Lg9_00337_MAF20_374425_exon1-AAAAAB-AA-AA---AAA--AAAAAAAABAAAAABAAA
RosBREEDSNP_SNP_AG_8229716_Lg9_00337_MAF30_1667271_exon1AABA-BABBAA-A-AB--ABAAB--ABBBAABAA---BB
RosBREEDSNP_SNP_TC_8265232_Lg9_00337_MAF20_27248_exon1-AAAABA-AB--A---AAA-----BAAAAABAAA---AA
RosBREEDSNP_SNP_TC_8291226_Lg9_00337_MAF10_MDP0000130028_exon1AAAAAAAABAAAAA--ABB--AAAA--ABAA-B---B-B
RosBREEDSNP_SNP_TG_8236405_Lg9_00337_MAF40_207976_exon1AAAB-ABABAB---ABABB--AAAABA---BBAAABB-A
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:9159976..9220670. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation