Mdo-HB-09-20

Haplotype Block Overview
Name Mdo-HB-09-20
Species Malus x domestica
Stock Haplotype [view all 431]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 16 9
Rome Beauty Law 3
Jonafree 3 7
Redfree 3 4
Spartan 11 4
Wagener 3 7
Worcester Pearmain 2 42
Tsugaru 4
Golden Delicious 3 4
Fuji 3 4
Empire 11 9
Gala 3 4
Honeycrisp 3 7
Elstar 4 9
Marshall McIntosh 11 4
Cripps Pink 3 4
Granny Smith 4 7
Jonathan 3 4
Ralls Janet 10 3
Delicious 4 9
Discovery 42
Prima 3 4
821 13
Fiesta 16 4
Ingrid Marie 16 9
Idared 4 7
Esopus Spitzenburg 4 9
Braeburn 16 4
Sansa 3 42
Lodi 3 5
James Grieve 16 9
Cripps Red 4 7
Burgundy 3 4
Akane 3 42
Ambrosia 3 9
Aurora Golden Gala 3 9
Beacon 3 4
Ben Davis 15 3 4 9
Cameo 4 9
Chinook 4 9
Clivia 16 4
Co-op 17 3 4
Co-op 18 42 58
Dayton 3 4 5
Delblush 3 9
Delcorf 4
Delorgue 3 4
Dolgo 13 34
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 3 5
Early Cortland 11 15 3
Empress 11 5
F2 26829-2-2 13 4
Fantazja 4 5
Fireside 4 7
Fortune 7 9
Frostbite 3 4
Ginger Gold 3
GMAL 4327 4 5
GMAL 4328 4 5
GMAL 4329 3 5
GMAL 4332 4 5
Goodland 11 3
Haralson 4 5
Honeygold 3 4
Hudson 3 9
Jersey Black 4
Jonamac 11 4
Keepsake 4 7
Kerr 13 4
Lady Williams 3 7
Liberty 11 4
Linda 11 5
Liveland Raspberry 3 34
Longfield 4
Macoun 11 4
Malinda 3 4
Mantet 35 37
Melba 11 34
MN 1627 3
MN 1628 3 7
MN 1691 11 7
MN 1706 3 4
MN 1708 3 4
MN 1760 3 4
MN 1764 3 4
MN 1789 3 7
MN 1802 3 7
MN 1836 37 4
MN 1837 11 3
MN 1839 3 5
MN 1888 3 7
MN 1899 3 5
MN 1940 11
MN 2016 37 4
AA-44 4
Monroe 3 4
Montgomery 3 4
Nicola 4 9
NJ 31 3 7
NJ 53 3
Oriole 3 5
PRI 14-126 3 4
PRI 14-510 4
PRI 1661-2 4 9
PRI 54-12 4
PRI 855-102 3
Primula 3 34
Raritan 4
Regent 4 5
Russian Seedling 4
Sawa 3 4
Sciros 3 9
Sharon 4 5
Silken 4
Wildung 4 5
Splendour 3 9
State Fair 37 5
NJ 55 3 9
Co-op 29 4
Sunrise 4
Sweet Sixteen 3 7
Topaz 16 4
Vista Bella 3 5
Wealthy 4 5
Winesap 9
Winter Banana 4
Yellow Newtown 21 4
Yellow Transparent 5 9
0407-0001 4 9
0407-0005 7 9
0407-0006 7 9
0407-0007 3 4
0407-0008 3 4
0408-0003 3 4
0408-0004 3 4
0408-0005 3 4
0408-0007 3 4
0408-0008 3 4
0408-0010 3 4
0408-0011 3 4
0408-0014 4 9
0408-0015 3 4
0409-0022 3 7
0409-0024 3 9
0409-0028 7 9
0409-0030 3
0409-0032 7 9
0409-0035 3 7
0409-0036 3 9
0409-0038 3
0409-0039 7 9
0409-0040 3 7
0409-0043 7 9
0409-0045 3
0410-0002 3 7
0410-0003 7 9
0410-0005 7
0410-0006 4 9
0410-0010 3 7
0410-0011 4 9
0410-0012 7 9
0410-0013 7 9
0410-0015 3 4
0410-0017 7 9
0410-0018 7 9
0414-0010 4 7
0414-0015 4 7
0414-0017 3 7
0414-0018 3 4
0414-0019 7
0414-0020 4 7
0414-0021 3 4
0415-0001 4 7
0415-0004 3 4
0415-0005 3 4
0415-0011 3 4
0415-0012 4 7
0415-0013 4 7
0415-0014 3 4
0415-0016 4 7
0415-0017 4 7
0415-0019 3 4
0415-0020 3 4
0415-0025 4 7
AE_HCxJonf-145 3
AE_HCXJonf-148 3 7
AE_HCxJonf-157 7
AE_HCXJonf-162 3 7
AE_HCXJonf-168 3 4
AE_HCxJonf-175 3 7
AE_HCxJonf-183 3 7
AE_HCxJonf-185 3
AE0118-237 3 5
AE0118-238 3 5
AE0118-239 5 7
AE0118-240 4 7
AE0118-243 5 7
AE0118-244 3 5
AE0118-245 3 5
AE0118-246 3 5
AE0118-249 4 7
AE0206-159 37 4
AE0206-160 37 4
AE0206-161 37 9
AE0206-162 37 9
AE0206-163 11 9
AE0206-164 11 9
AE0206-165 11 4
AE0206-167 11 4
AE0206-168 11 4
AE0206-169 37 9
AE0206-170 37 9
AE0210-146 3 4
AE0210-147 4 5
AE0210-149 3 4
AE0210-150 3 4
AE0210-151 3 4
AE0210-152 37 4
AE0210-153 3 4
AE0210-154 3 4
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 3 4
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 3 4
AE0210-165 3 4
AE0210-166 3 4
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 3 4
AE0210-171 4 5
AE0210-172 3 4
AE0210-173 3 4
AE0210-174 4 5
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 3 5
AE0213-178 3 4
AE0213-179 3 5
AE0213-180 3 4
AE0213-181 3 5
AE0213-182 3 5
AE0213-183 3 4
AE0213-186 3 4
AE0213-187 3 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3 4
AE0213-196 3 5
AE0213-197 3 4
AE0213-198 3 4
AE0213-199 3 4
AE0213-200 3 5
AE0213-201 3 5
AE0213-202 3 5
AE0213-205 3 4
AE0213-206 3 5
AE0251-323 4 7
AE0251-325 3 9
AE0251-327 4 7
AE0251-329 4 7
AE0251-330 3 4
AE0251-331 7 9
AE0251-342 4 7
AE0251-343 3 4
AE0406-239 4 7
AE0406-254 4 7
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 3 4
AE0406-264 3 4
AE0406-266 3 4
AE0406-271 4 7
AE0406-274 3 4
AE0406-278 4 7
AE0406-281 3 4
AE0406-286 4 7
AE0406-288 3 4
AE0406-289 4 7
AE0406-294 4 7
AE0406-298 4 7
Minneiska 11 3
NJ 303955 9
PRI 612-1 4 9
Arlet 4 7
Co-op 39 4
Pinova 4
Scired 3 4
Scifresh 3 4
0409-0025 3
0409-0026 7 9
0409-0027 3 7
0409-0031 3 7
0409-0033 3
0409-0047 7 9
G-14-050 4
G-14-052 4
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 4
G-14-059 4
G-14-060 4
G-14-061 4
G-14-062 4
G-14-064 4
G-14-065 4
G-14-069 4
G-14-067 4
G-14-068 4
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4
G-14-076 4
G-14-077 4
G-14-078 4
G-14-080 4
G-09-232 16 3
G-09-233 3 4
G-09-234 3 4
G-09-235 16 3
G-09-236 3 4
G-09-237 16 3
G-09-238 16 3
G-09-239 16 3
G-09-240 3 4
G-09-241 16 3
G-09-242 16 3
G-09-243 3 4
G-09-245 3 4
G-09-246 16 3
G-09-258 16 3
G-09-259 16 3
G-09-260 3 4
G-09-261 16 3
G-09-262 3 4
G-09-263 16 3
G-09-264 3 4
G-09-265 3 4
G-09-266 3 4
G-09-267 3 4
G-09-268 16 3
0408-0021 3 4
Wijcik McIntosh 11 4
Beauty of Bath 42 56
Priam 3
Northern Spy 3 7
Co-op 15 4
MN 1702 3 4
WA 2 3 9
WA 5 3 4
Pitmaston Pineapple 4 9
0411-0011 4 7
0411-0017 4
0411-0023 4
AE0250-086 4 7
AE0250-087 3 9
AE0250-089 3 4
AE0250-090 3 9
AE0250-092 3 9
AE0250-093 7 9
AE0250-094 3 4
AE0250-095 3 4
Sonya 16 4
Co-op 38 3 4
AE0250-096 4 7
AE0250-327 4 7
Co-op 30 4
Jonagrimes 3 5
AE0211-036 3 5
G-07-039 3 42
PRI 14-152 13 4
PRI 47-176 3 4
G-07-041 3 4
BC-8S-27-43 4 9
AE0250-091 3 4
AE0250-097 4 7
AE0250-325 5 7
AE0250-326 3 5
AE0250-329 3 5
AE0250-333 4 7
AE0250-334 4 7
AE0250-335 5 7
AE0250-336 5 7
AE0250-338 5 7
AE0250-341 3 4
AE0211-038 3 4
AE0211-043 3 5
AE0211-045 3 5
AE0211-051 3 4
G-07-010 3 7
G-07-014 42 7
G-07-015 3 4
G-07-019 4 42
G-07-020 4 42
G-07-024 4 42
G-07-032 42 7
G-07-033 3 7
G-07-034 3 7
G-07-035 42 7
G-07-044 3 7
AE0211-053 3 37
AE0211-054 3 37
AE0250-088 3 37
AE0250-324 3 37
AE0250-328 11 3
AE0250-331 37 7
AE0250-332 11 3
AE0250-337 11 3
AE0250-339 3 37
Minnewashta 11 37
Autumn Crisp 3 4
G-14-066 4
Lu1-11-010 3 9
Lu1-11-013 4 9
Lu1-11-016 11 3
Lu1-11-017 4 9
Lu1-11-018 11 3
NJ 90 3 4
Lord Lambourne 16 42
Antonovka GH 4 9
Grimes Golden 3
Kidds Orange Red 4 9
Malus baccata Hansen #2 62 63
Malus baccata Jackii 13
Summerred 11 64
William's Pride 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-20Apple-RosBREED-3.9K-2019916.8417.06
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768
GDsnp00893BBAA-AAAAABAAAAABAABA----AB---ABA--A-ABAAAAAA-AAABA-ABAAB-BA--A--AA
RosBREEDSNP_SNP_AG_7685092_Lg9_01858_MAF10_326877_exon1AAAB-BAAAAABBAAAAAAABABAA------AA--AAABAABBAA-BB--AABABABBAAABB--AA
RosBREEDSNP_SNP_CT_7662205_Lg9_00893_MAF10_728787_exon1BBBBBABBBBBBBAB----B---BBBBBBA-BB--BBBAAA-A---BB--BBBBBAB-BBBBB--AB
RosBREEDSNP_SNP_CT_7678687_Lg9_01858_MAF20_1662839_exon5-BBBBBBB-ABAABBBBBBBBBBBBBB-BBBBBBAA--B-BB-BB-A---AB----BA--AB---BB
RosBREEDSNP_SNP_GA_7643163_Lg9_00893_MAF10_6268_exon1-BBBBB-B-B-B-AABBBBBBBBBBBBB--BBB--BBBB-BB---BB---BBBBBBBBBBBBB--B-
RosBREEDSNP_SNP_TC_7696891_Lg9_01858_MAF30_196200_exon1-AAB-BBB-A-B-BB-AABBBABABBA---B----BA-B-BA-AB---------ABABAABABABAA
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:8536067..8587123. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation