Mdo-HB-09-2

Haplotype Block Overview
Name Mdo-HB-09-2
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 5
Rome Beauty Law 3
Jonafree 3
Redfree 3
Spartan 3 7
Wagener 3
Worcester Pearmain 4
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3
Empire 3
Gala 3 4
Honeycrisp 3 5
Elstar 3 4
Marshall McIntosh 3 7
Cripps Pink 3 4
Granny Smith 3
Jonathan 3
Ralls Janet 3 6
Delicious 3
Discovery 14 4
Prima 3 4
821 5
Fiesta 3 5
Ingrid Marie 3 5
Idared 3
Esopus Spitzenburg 3
Braeburn 3 5
Sansa 4
Lodi 3
James Grieve 5
Cripps Red 3
Burgundy 3
Akane 3 4
Ambrosia 3
Aurora Golden Gala 3 4
Beacon 3 5
Ben Davis 3 4
Cameo 3 4
Chinook 3
Clivia 5
Co-op 17 3
Co-op 18 3
Dayton 3
Delblush 3
Delorgue 3 4
Dolgo 3 5
Geheimrat Dr. Oldenburg 3 5
Duchess of Oldenburg 5
Early Cortland 3
Empress 3 7
F2 26829-2-2 4 5
Fantazja 3 5
Fireside 3 5
Fortune 3 5
Frostbite 3 5
Ginger Gold 3 4
GMAL 4327 12 5
GMAL 4328 4 5
GMAL 4329 3 4
GMAL 4332 4 5
Goodland 3 5
Haralson 3 5
Honeygold 3
Hudson 3
Jersey Black 3
Jonamac 3 7
Keepsake 3
Kerr 3 5
Lady Williams 3
Liberty 5 7
Linda 3 5
Liveland Raspberry 3 5
Longfield 3 4
Macoun 3 7
Malinda 3
Mantet 5
Melba 3 7
Melrose 3
MN 1627 3 5
MN 1628 3 5
MN 1691 3 5
MN 1706 3 5
MN 1708 3 5
MN 1760 3
MN 1764 3
MN 1789 5
MN 1802 3 5
MN 1836 3 5
MN 1837 5
MN 1839 3 5
MN 1888 5
MN 1899 5
MN 1940 5 7
MN 2016 4 5
AA-44 3
Monroe 3
Montgomery 3
Nicola 3
NJ 31 3
NJ 53 3
Oriole 5
PRI 14-126 3 4
PRI 14-510 4
PRI 1661-2 3
PRI 54-12 5
PRI 855-102 3
Primula 3
Raritan 3 5
Regent 3 5
Russian Seedling 3
Sawa 3
Sciros 3 4
Sharon 3
Silken 3 4
Wildung 3
Splendour 3
State Fair 5
NJ 55 3 4
Co-op 29 3 4
Sunrise 3 4
Sweet Sixteen 3 5
Topaz 3 4
Vista Bella 3
Wealthy 3 5
Winesap 3
Winter Banana 3 4
Yellow Newtown 3
Yellow Transparent 3
0407-0001 3 4
0407-0005 4
0407-0006 3 4
0407-0007 3
0407-0008 4
0408-0003 4
0408-0004 4
0408-0005 3 4
0408-0007 3 4
0408-0008 3
0408-0010 4
0408-0011 3 4
0408-0014 3
0408-0015 4
0409-0022 3 4
0409-0024 4 5
0409-0028 3 4
0409-0030 3
0409-0032 3 4
0409-0035 3 4
0409-0036 3 5
0409-0038 3 5
0409-0039 3
0409-0040 3 4
0409-0043 3
0409-0045 3
0410-0002 3 4
0410-0003 3
0410-0005 3 4
0410-0006 3
0410-0010 3 4
0410-0011 3
0410-0012 3
0410-0013 3 4
0410-0015 3
0410-0017 3 4
0410-0018 3 4
0414-0010 4 5
0414-0015 3 4
0414-0017 3 5
0414-0018 4 5
0414-0019 3
0414-0020 3 4
0414-0021 3 5
0415-0001 3 4
0415-0004 3
0415-0005 4 5
0415-0011 3 5
0415-0012 3 4
0415-0013 3 4
0415-0014 3 5
0415-0016 3
0415-0017 4 5
0415-0019 3 5
0415-0020 4 5
0415-0025 3
AE_HCxJonf-145 3 5
AE_HCXJonf-148 3
AE_HCxJonf-157 3 5
AE_HCXJonf-162 3
AE_HCXJonf-168 4 5
AE_HCxJonf-175 3 5
AE_HCxJonf-183 3
AE_HCxJonf-185 3 5
AE0118-237 3 5
AE0118-238 3 5
AE0118-239 3 5
AE0118-240 3
AE0118-243 3 5
AE0118-244 3 5
AE0118-245 5
AE0118-246 3 5
AE0118-249 3
AE0206-159 3 5
AE0206-160 3 5
AE0206-161 3 5
AE0206-162 3 5
AE0206-163 3 5
AE0206-164 3 5
AE0206-165 3 5
AE0206-167 3 5
AE0206-168 3 5
AE0206-169 3 5
AE0206-170 3 5
AE0210-146 3
AE0210-147 3
AE0210-149 3
AE0210-150 3 4
AE0210-151 4
AE0210-152 4 5
AE0210-153 3 4
AE0210-154 3 4
AE0210-157 3 4
AE0210-158 3 4
AE0210-159 3 4
AE0210-162 3 4
AE0210-163 4
AE0210-164 3
AE0210-165 3 4
AE0210-166 4
AE0210-168 3 4
AE0210-169 3 4
AE0210-170 4
AE0210-171 3 4
AE0210-172 3 4
AE0210-173 3 4
AE0210-174 3
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 4 5
AE0213-178 3 4
AE0213-179 3 5
AE0213-180 3 4
AE0213-181 4 5
AE0213-182 4
AE0213-183 3 4
AE0213-186 4 5
AE0213-187 3 4
AE0213-190 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 4
AE0213-196 3 5
AE0213-197 3 4
AE0213-198 12 4
AE0213-199 3 4
AE0213-200 3 5
AE0213-201 3 4
AE0213-202 3 4
AE0213-205 3 5
AE0213-206 3 5
AE0251-323 3
AE0251-325 3
AE0251-327 3
AE0251-329 3
AE0251-330 3 5
AE0251-331 3
AE0251-342 3
AE0251-343 3 5
AE0406-239 3 4
AE0406-254 3
AE0406-258 3 5
AE0406-259 3 5
AE0406-263 3 4
AE0406-264 3 4
AE0406-266 3 5
AE0406-271 3 5
AE0406-274 4 5
AE0406-278 3
AE0406-281 4 5
AE0406-286 3
AE0406-288 3 5
AE0406-289 3 4
AE0406-294 3
AE0406-298 3 4
Minneiska 5
NJ 303955 3
PRI 612-1 3
Arlet 3 4
Co-op 39 3
Pinova 3 5
Scired 3
Scifresh 3 4
0409-0025 4 5
0409-0026 4 5
0409-0027 3
0409-0031 3 4
0409-0033 4 5
0409-0047 3 4
G-14-050 3 5
G-14-052 3 5
G-14-054 3
G-14-055 3
G-14-056 3
G-14-057 3 5
G-14-059 3 5
G-14-060 3
G-14-061 3 5
G-14-062 3
G-14-064 3
G-14-065 3 5
G-14-069 3 5
G-14-067 3
G-14-068 3 5
G-14-071 3
G-14-073 3 5
G-14-074 3 5
G-14-075 3
G-14-076 3 5
G-14-077 3
G-14-078 3
G-14-080 3 5
G-09-232 4 5
G-09-233 3 4
G-09-234 3
G-09-235 4 5
G-09-236 3 4
G-09-237 3 5
G-09-238 3 4
G-09-239 4 5
G-09-240 3
G-09-241 3 5
G-09-242 3 5
G-09-243 3 4
G-09-245 4 5
G-09-246 3 5
G-09-258 4 5
G-09-259 3
G-09-260 3 4
G-09-261 4 5
G-09-262 3
G-09-263 3 4
G-09-264 3 4
G-09-265 3 4
G-09-266 3
G-09-267 3 5
G-09-268 4 5
0408-0021 4
Wijcik McIntosh 3 7
Beauty of Bath 13 14
Priam 3
Northern Spy 3
Co-op 15 3
MN 1702 3 5
WA 2 3 4
WA 5 3
Pitmaston Pineapple 3
0411-0011 4
0411-0017 3 4
0411-0023 3 4
AE0250-086 3
AE0250-087 3
AE0250-089 3 5
AE0250-090 3
AE0250-092 3
AE0250-093 3 5
AE0250-094 3 5
AE0250-095 3 5
Sonya 3 5
Co-op 38 3 4
AE0250-096 3
AE0250-327 3 5
Co-op 30 3 4
Jonagrimes 3 5
AE0211-036 3
G-07-039 4 5
PRI 14-152 4
PRI 47-176 3 4
G-07-041 3 4
BC-8S-27-43 3
AE0250-091 12 3
AE0250-097 12 3
AE0250-325 3 5
AE0250-326 5
AE0250-329 5
AE0250-333 12 3
AE0250-334 12 3
AE0250-335 3 5
AE0250-336 3 5
AE0250-338 5
AE0250-341 12 5
AE0211-038 4
AE0211-043 4 5
AE0211-045 3 5
AE0211-051 4 5
G-07-010 3 4
G-07-014 3 4
G-07-015 3 4
G-07-019 3 4
G-07-020 3 4
G-07-024 3 4
G-07-032 3 4
G-07-033 3 4
G-07-034 3 4
G-07-035 3 4
G-07-044 3 4
AE0211-053 4 5
AE0211-054 3 5
AE0250-088 5
AE0250-324 3 5
AE0250-328 5
AE0250-331 3 5
AE0250-332 5
AE0250-337 3 5
AE0250-339 3 5
Minnewashta 5
Autumn Crisp 3 4
G-14-066 3 5
Lu1-11-013 3 7
Lu1-11-016 3
Lu1-11-017 3
Lu1-11-018 3 7
NJ 90 3
Lord Lambourne 4 5
Antonovka GH 3 5
Grimes Golden 3
Kidds Orange Red 3
Malus baccata Hansen #2 16 5
Malus baccata Jackii 16
Summerred 11 5
William's Pride 3 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-2Apple-RosBREED-3.9K-201991.521.53
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516
GDsnp01328BBABBBA-B-B---A
RosBREED_SNP_AG_989405_Lg9-AAA-B-AA-B-AAA
RosBREEDSNP_SNP_TG_1005241_Lg9_01328_MAF30_1648178_exon2AAABBAA--ABBABB
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:934604..961986. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation