Mdo-HB-09-18

Haplotype Block Overview
Name Mdo-HB-09-18
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 11
Rome Beauty Law 11 3
Jonafree 3 7
Redfree 3
Spartan 3 4
Wagener 3 7
Worcester Pearmain 3
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3 4
Empire 10 3
Gala 3 4
Honeycrisp 3 7
Elstar 10 4
Marshall McIntosh 11 3
Cripps Pink 3 4
Granny Smith 11 7
Jonathan 3
Ralls Janet 3
Delicious 10 4
Prima 3 4
821 5
Fiesta 11 3
Ingrid Marie 10 11
Idared 3 7
Esopus Spitzenburg 10 3
Braeburn 11 4
Sansa 3
Lodi 3 5
James Grieve 11
Cripps Red 4 7
Burgundy 3 33
Akane 3
Ambrosia 10 3
Aurora Golden Gala 10 3
Beacon 3
Ben Davis 10 13 3 4
Cameo 10 4
Chinook 10 4
Clivia 11 3
Co-op 17 3
Co-op 18 3 7
Dayton 3 5
Delblush 10 3
Delorgue 3 4
Dolgo 35 5
Geheimrat Dr. Oldenburg 3 7
Duchess of Oldenburg 3 5
Early Cortland 13 3
Empress 3 5
F2 26829-2-2 4 5
Fantazja 11 5
Fireside 10 3
Fortune 10 7
Frostbite 3
Ginger Gold 3 4
GMAL 4327 3
GMAL 4328 3 5
GMAL 4329 3 5
GMAL 4332 3 5
Goodland 3
Haralson 3 5
Honeygold 3
Hudson 10 3
Jersey Black 3
Jonamac 3
Keepsake 3 7
Kerr 3 5
Lady Williams 3 7
Liberty 3 4
Linda 3 5
Longfield 30 42
Macoun 3
Malinda 3
Mantet 28 30
Melba 3
Melrose 3 4
MN 1627 3
MN 1628 3 7
MN 1691 10 3
MN 1706 3
MN 1708 3
MN 1760 3
MN 1764 3
MN 1789 10 3
MN 1802 3 7
MN 1836 3 30
MN 1837 3
MN 1839 3 5
MN 1888 10 3
MN 1899 3 5
MN 1940 3
MN 2016 30 4
AA-44 3
Monroe 3
Montgomery 3
Nicola 10 4
NJ 31 7
NJ 53 11 3
Oriole 3 5
PRI 14-126 3 4
PRI 14-510 4
PRI 1661-2 10 11
PRI 54-12 3 4
PRI 855-102 3
Primula 3
Raritan 3
Regent 11 5
Russian Seedling 3 4
Sawa 11 3
Sciros 10 3
Sharon 11 5
Silken 3 4
Wildung 3 5
Splendour 10 3
State Fair 30 5
NJ 55 10 3
Co-op 29 11 4
Sunrise 3 4
Sweet Sixteen 3 7
Topaz 11 4
Vista Bella 3 5
Wealthy 3 5
Winesap 10 9
Winter Banana 11 4
Yellow Newtown 22 42
Yellow Transparent 5 8
0407-0001 10 4
0407-0005 10 7
0407-0006 10 7
0407-0007 3 4
0407-0008 3 4
0408-0003 3
0408-0004 3
0408-0005 11 3
0408-0007 11 3
0408-0008 3
0408-0010 11 3
0408-0011 10 3
0408-0014 10 11
0408-0015 3
0409-0022 3 7
0409-0024 10 3
0409-0028 3 7
0409-0030 3
0409-0032 10 7
0409-0035 3 7
0409-0036 10 3
0409-0038 3
0409-0039 10 7
0409-0040 3 7
0409-0043 10 7
0409-0045 3
0410-0002 3 7
0410-0003 10 7
0410-0005 3 7
0410-0006 10 11
0410-0010 3 7
0410-0011 10 11
0410-0012 10 7
0410-0013 10 7
0410-0015 11 3
0410-0017 10 7
0410-0018 10 7
0414-0010 4 7
0414-0015 4 7
0414-0017 3 7
0414-0018 3
0414-0019 7
0414-0020 3 7
0414-0021 3 4
0415-0001 3 7
0415-0004 11 3
0415-0005 3
0415-0011 11 3
0415-0012 3 7
0415-0013 3 7
0415-0014 3
0415-0016 11 7
0415-0017 3 7
0415-0019 11 3
0415-0020 11 3
0415-0025 3 7
AE_HCxJonf-145 3
AE_HCXJonf-148 3 7
AE_HCxJonf-157 7
AE_HCXJonf-162 3 7
AE_HCXJonf-168 3 4
AE_HCxJonf-175 3 7
AE_HCxJonf-183 3 7
AE_HCxJonf-185 3
AE0118-237 3 5
AE0118-238 3 5
AE0118-239 5 7
AE0118-240 11 7
AE0118-243 5 7
AE0118-244 5 7
AE0118-245 3 5
AE0118-246 5 7
AE0118-249 11 7
AE0206-159 30 4
AE0206-160 30 4
AE0206-161 10 30
AE0206-162 10 30
AE0206-163 10 3
AE0206-164 3 4
AE0206-165 3 4
AE0206-167 3 4
AE0206-168 3 4
AE0206-169 10 30
AE0206-170 10 30
AE0210-146 3
AE0210-147 4 5
AE0210-149 3
AE0210-150 3 4
AE0210-151 3 4
AE0210-152 3 30
AE0210-153 3 5
AE0210-154 3 4
AE0210-157 3 5
AE0210-158 4 5
AE0210-159 3
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 3
AE0210-165 3 4
AE0210-166 3
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 3 4
AE0210-171 3 5
AE0210-172 3 4
AE0210-173 3
AE0210-174 3 5
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 3
AE0213-179 3 5
AE0213-180 3 4
AE0213-181 4 5
AE0213-182 3 5
AE0213-183 3
AE0213-186 3
AE0213-187 3 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3 4
AE0213-196 3 5
AE0213-197 3 4
AE0213-198 3 4
AE0213-199 3
AE0213-200 3 5
AE0213-201 3 5
AE0213-202 3 5
AE0213-205 3
AE0213-206 3 5
AE0251-323 4 7
AE0251-325 10 3
AE0251-327 4 7
AE0251-329 4 7
AE0251-330 3 4
AE0251-331 10 7
AE0251-342 4 7
AE0251-343 3 4
AE0406-239 4 7
AE0406-254 3 7
AE0406-258 3
AE0406-259 3
AE0406-263 3 4
AE0406-264 3 4
AE0406-266 3
AE0406-271 3 7
AE0406-274 3 4
AE0406-278 3 7
AE0406-281 3 4
AE0406-286 3 7
AE0406-288 3
AE0406-289 4 7
AE0406-294 3 7
AE0406-298 3 7
Minneiska 3
NJ 303955 10
PRI 612-1 10 3
Arlet 4 7
Co-op 39 3
Pinova 3 4
Scired 3 4
Scifresh 3 4
0409-0025 3
0409-0026 10 7
0409-0027 3 7
0409-0031 3 7
0409-0033 3
0409-0047 3 7
G-14-050 3 4
G-14-052 3 4
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 3 4
G-14-059 3 4
G-14-060 4
G-14-061 3 4
G-14-062 4
G-14-064 3 4
G-14-065 4
G-14-069 3 4
G-14-067 4
G-14-068 4
G-14-071 4
G-14-073 3 4
G-14-074 3 4
G-14-075 4
G-14-076 3 4
G-14-077 4
G-14-078 4
G-14-080 3 4
G-09-232 11 4
G-09-233 4
G-09-234 3 4
G-09-235 11 4
G-09-236 4
G-09-237 11 3
G-09-238 11 4
G-09-239 11 4
G-09-240 4
G-09-241 11 4
G-09-242 11 3
G-09-243 4
G-09-245 4
G-09-246 11 4
G-09-258 11 4
G-09-259 11 3
G-09-260 4
G-09-261 11 3
G-09-262 3 4
G-09-263 11 3
G-09-264 4
G-09-265 4
G-09-266 4
G-09-267 3 4
G-09-268 11 4
0408-0021 3
Wijcik McIntosh 30 42
Priam 3
Northern Spy 3 7
Co-op 15 3
MN 1702 3
WA 2 10 3
WA 5 3
Pitmaston Pineapple 10 3
0411-0011 3 7
0411-0017 11 4
0411-0023 11 4
AE0250-086 4 7
AE0250-087 10 3
AE0250-089 3 4
AE0250-090 10 3
AE0250-092 10 3
AE0250-093 10 7
AE0250-094 3 4
AE0250-095 3 4
Sonya 11 4
Co-op 38 3 4
AE0250-096 10 3
AE0250-327 10 3
Co-op 30 11 3
Jonagrimes 3 5
AE0211-036 3 5
G-07-039 3
PRI 47-176 3 4
G-07-041 3 4
BC-8S-27-43 10 4
AE0250-091 3
AE0250-097 3 7
AE0250-325 3 7
AE0250-326 3
AE0250-329 3
AE0250-333 3 7
AE0250-334 3 7
AE0250-335 3 7
AE0250-336 3 7
AE0250-338 3 7
AE0250-341 3
AE0211-038 3 4
AE0211-043 4 5
AE0211-045 3 5
AE0211-051 3 4
G-07-010 3 7
G-07-014 3 7
G-07-015 11 3
G-07-019 11 3
G-07-020 11 3
G-07-024 11 3
G-07-032 3 7
G-07-033 3 7
G-07-034 3 7
G-07-035 3 7
G-07-044 3 7
AE0211-053 30 4
AE0211-054 3 30
AE0250-088 3 30
AE0250-324 3 30
AE0250-328 3
AE0250-331 30 7
AE0250-332 3
AE0250-337 3 7
AE0250-339 3 30
Minnewashta 3 30
Autumn Crisp 3 4
G-14-066 3 4
Lu1-11-010 10 3
Lu1-11-013 3 4
Lu1-11-016 3
Lu1-11-017 10 4
Lu1-11-018 3
NJ 90 11 4
Lord Lambourne 11 3
Antonovka GH 46 47
Grimes Golden 3
Kidds Orange Red 10 4
Malus baccata Hansen #2 3 5
Malus baccata Jackii 40
Summerred 3 48
William's Pride 3 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-18Apple-RosBREED-3.9K-2019914.7615.12
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051
GDsnp00280-BABBBBBBBBB--BAB-BBBBB-BBBBB--B-BB-BA-BB--ABB----
RosBREEDSNP_SNP_AG_6778759_Lg9_00280_MAF40_MDP0000764434_exon1AAAB-B--AB-BAAAAAABBA-------B-ABBABBAABBAABBABBA--
RosBREEDSNP_SNP_CT_6752047_Lg9_00280_MAF10_MDP0000301510_exon3-BBBBBABABBBABABB-BBAA-BBB--BB-A------BABBBBBABBBA
RosBREEDSNP_SNP_TC_6744368_Lg9_00280_MAF10_412950_exon1AAAAABAAAAAAAA---A--AAAAB---AAAABAAAAAABAABAAAAA--
RosBREEDSNP_SNP_TC_6757616_Lg9_00280_MAF30_1630208_exon3AAAAAAAAAB-AAAAAAABAAAAA-AABB--AAAAAAAAAA--BBA----
RosBREEDSNP_SNP_TG_6833796_Lg9_00280_MAF50_MDP0000232355_exon1AAAAABBBBB-BBABAABBBAA-A-B--A-ABBAAA--ABBBABBAAAAB
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:7548728..7638729. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation