Mdo-HB-09-15

Haplotype Block Overview
Name Mdo-HB-09-15
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 8
Rome Beauty Law 12 3
Jonafree 3 4
Redfree 39 8
Spartan 3 8
Wagener 3
Worcester Pearmain 3
Tsugaru 3 6
Golden Delicious 3
Fuji 3
Empire 3 8
Gala 3 8
Honeycrisp 3 5
Elstar 3 8
Marshall McIntosh 3 5
Cripps Pink 3 6
Granny Smith 4 5
Jonathan 4 6
Ralls Janet 3
Delicious 3 8
Discovery 3 4
Prima 3
821 14
Fiesta 4 6
Ingrid Marie 4 8
Idared 3 6
Esopus Spitzenburg 3 6
Braeburn 3 4
Sansa 3
Lodi 3 4
James Grieve 3 4
Cripps Red 3 4
Burgundy 3 4
Akane 3 4
Ambrosia 3 8
Aurora Golden Gala 3 8
Beacon 30 4
Ben Davis 3 4 8
Cameo 3 8
Chinook 8
Clivia 4
Co-op 17 3 6
Co-op 18 17 8
Dayton 3 4 6
Delblush 3 8
Delcorf 3 33
Delorgue 3 4
Dolgo 35
Geheimrat Dr. Oldenburg 4
Duchess of Oldenburg 4 5
Early Cortland 3 4
Empress 3 4
F2 26829-2-2 14 3
Fantazja 4 5
Fireside 6 8
Fortune 4 8
Frostbite 5 6
Ginger Gold 3
GMAL 4327 3
GMAL 4328 3 4
GMAL 4329 3 6
GMAL 4332 3 4
Goodland 3 5
Haralson 4 6
Honeygold 3 6
Hudson 3 8
Jersey Black 27 3
Jonamac 3 6
Keepsake 3 6
Kerr 35 6
Lady Williams 4 6
Liberty 3
Linda 3 4
Liveland Raspberry 3 6
Longfield 17 6
Macoun 3
Malinda 3 6
Melba 3 6
Melrose 3 4
MN 1627 3 5
MN 1628 3 5
MN 1691 3 8
MN 1706 17 36
MN 1708 5 6
MN 1760 3 6
MN 1764 3 6
MN 1789 5 8
MN 1802 3 5
MN 1836 4 6
MN 1837 3 5
MN 1839 3 4
MN 1888 3 8
MN 1899 4 5
MN 1940 3
MN 2016 3 4
AA-44 6
Monroe 3 6
Montgomery 3 4
Nicola 8
NJ 31 3
NJ 53 3 5
Oriole 3 4
PRI 14-126 3
PRI 1661-2 5 8
PRI 54-12 3 6
PRI 855-102 4
Primula 3 6
Raritan 6
Regent 4 5
Russian Seedling 3
Sawa 5 6
Sciros 3 8
Sharon 4 5
Silken 3
Wildung 4 6
Splendour 3 8
State Fair 4
NJ 55 3 8
Co-op 29 3 5
Sunrise 3 6
Sweet Sixteen 3 5
Topaz 3 4
Vista Bella 3 4
Wealthy 4 6
Winesap 8
Winter Banana 3 5
Yellow Newtown 3 8
Yellow Transparent 4 8
0407-0005 3
0407-0006 3 8
0407-0007 3 8
0407-0008 3
0408-0003 3 6
0408-0004 3 6
0408-0005 3 5
0408-0007 3 5
0408-0008 6 8
0408-0010 3 5
0408-0011 6 8
0408-0014 5 8
0408-0015 3 6
0409-0022 3
0409-0024 5 8
0409-0028 3
0409-0030 3
0409-0032 3
0409-0035 3
0409-0036 5 8
0409-0038 3 5
0409-0039 3 8
0409-0040 3
0409-0043 3 8
0409-0045 3 5
0410-0002 3 4
0410-0003 4 8
0410-0005 3 4
0410-0006 5 8
0410-0010 3 4
0410-0011 5 8
0410-0012 4 8
0410-0013 4 8
0410-0015 3 5
0410-0017 4 8
0410-0018 3 4
0414-0010 3
0414-0015 3
0414-0017 3 5
0414-0018 5 6
0414-0019 3
0414-0020 3 6
0414-0021 3 5
0415-0001 3 6
0415-0004 5
0415-0005 5 6
0415-0011 5
0415-0012 3 6
0415-0013 3 6
0415-0014 5 6
0415-0016 3 5
0415-0017 3 6
0415-0019 5
0415-0020 5
0415-0025 3 6
AE_HCxJonf-145 4 5
AE_HCXJonf-148 3 4
AE_HCxJonf-157 3
AE_HCXJonf-162 3 5
AE_HCXJonf-168 3 5
AE_HCxJonf-175 3 5
AE_HCxJonf-183 3 4
AE_HCxJonf-185 4 5
AE0118-237 4 5
AE0118-238 4 5
AE0118-239 3 4
AE0118-240 3 5
AE0118-243 3 4
AE0118-244 3 4
AE0118-245 4 5
AE0118-246 3 4
AE0118-249 3 5
AE0206-159 4 8
AE0206-160 4 8
AE0206-161 4 8
AE0206-162 4 8
AE0206-163 3 8
AE0206-164 3 8
AE0206-165 3 8
AE0206-167 3 8
AE0206-168 3 8
AE0206-169 4 8
AE0206-170 3 8
AE0210-146 6
AE0210-147 3 6
AE0210-149 3 6
AE0210-150 3
AE0210-151 3
AE0210-152 4 6
AE0210-153 6
AE0210-154 3
AE0210-157 6
AE0210-158 3 6
AE0210-159 3 6
AE0210-162 3 6
AE0210-163 3 6
AE0210-164 3 6
AE0210-165 3
AE0210-166 3 6
AE0210-168 3 6
AE0210-169 3 6
AE0210-170 3
AE0210-171 6
AE0210-172 3
AE0210-173 3 6
AE0210-174 6
AE0213-175 3 4
AE0213-176 3 4
AE0213-177 3 4
AE0213-178 3
AE0213-179 3 4
AE0213-180 3
AE0213-181 3 4
AE0213-182 3 4
AE0213-183 3
AE0213-186 3 4
AE0213-187 3
AE0213-190 3
AE0213-193 3
AE0213-194 3
AE0213-195 3
AE0213-196 3 4
AE0213-197 3
AE0213-198 3
AE0213-199 3
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 3 4
AE0213-205 3
AE0213-206 3 4
AE0251-323 3 8
AE0251-325 5 8
AE0251-327 3 8
AE0251-329 3 8
AE0251-330 5 8
AE0251-331 3 8
AE0251-342 3 8
AE0251-343 5 8
AE0406-239 3
AE0406-254 3
AE0406-258 3 5
AE0406-259 3 5
AE0406-263 3 5
AE0406-264 3
AE0406-266 3 5
AE0406-271 3 6
AE0406-274 3 5
AE0406-278 3
AE0406-281 3 5
AE0406-286 3
AE0406-288 3 5
AE0406-289 3
AE0406-294 3
AE0406-298 3
Minneiska 3 5
NJ 303955 8
PRI 612-1 3 8
Arlet 3
Co-op 39 6
Pinova 3 4
Scired 3 8
Scifresh 3
0409-0025 3 5
0409-0026 3 8
0409-0027 3
0409-0031 3
0409-0033 3 5
0409-0047 3
G-14-050 3 4
G-14-052 3 4
G-14-054 3
G-14-055 3
G-14-056 3
G-14-057 3 4
G-14-059 3 4
G-14-060 3
G-14-061 3 4
G-14-062 3
G-14-064 3 4
G-14-065 3
G-14-069 3 4
G-14-067 3
G-14-068 3
G-14-071 3
G-14-073 3 4
G-14-074 3 4
G-14-075 3
G-14-076 3 4
G-14-077 3
G-14-078 3
G-14-080 3 4
G-09-232 3 4
G-09-233 3
G-09-234 3
G-09-235 3 4
G-09-236 3
G-09-237 3 4
G-09-238 3 4
G-09-239 3 4
G-09-240 3
G-09-241 3 4
G-09-242 3 4
G-09-243 3
G-09-245 3
G-09-246 3 4
G-09-258 3 4
G-09-259 3 4
G-09-260 3
G-09-261 3 4
G-09-262 3
G-09-263 3 4
G-09-264 3
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 3 4
0408-0021 3 6
Wijcik McIntosh 3 5
Beauty of Bath 4
Priam 3 4
Northern Spy 3
Co-op 15 3 6
MN 1702 5 6
WA 2 3 8
WA 5 3 6
Pitmaston Pineapple 3 8
0411-0011 3 6
0411-0017 3 5
0411-0023 3 5
AE0250-086 3 8
AE0250-087 3 8
AE0250-089 5 8
AE0250-090 5 8
AE0250-092 5 8
AE0250-093 3 8
AE0250-094 5 8
AE0250-095 5 8
Sonya 4 8
Co-op 38 3
AE0250-096 6 8
AE0250-327 6 8
Co-op 30 5 6
Jonagrimes 3 4
AE0211-036 3 4
G-07-039 3 5
G-07-041 3
BC-8S-27-43 8
AE0250-091 3 5
AE0250-097 3
AE0250-325 3
AE0250-326 3 5
AE0250-329 3 5
AE0250-333 3
AE0250-334 3
AE0250-335 3
AE0250-336 3
AE0250-338 3
AE0250-341 3 5
AE0211-038 3
AE0211-043 3 4
AE0211-045 3 4
AE0211-051 3
G-07-010 3 4
G-07-014 3 4
G-07-015 3 5
G-07-019 3 5
G-07-020 3 5
G-07-024 3 5
G-07-032 3 4
G-07-033 3 4
G-07-034 3 4
G-07-035 3 4
G-07-044 3 4
AE0211-053 3 4
AE0211-054 3 4
AE0250-088 4 5
AE0250-324 4 5
AE0250-328 3 5
AE0250-331 3 4
AE0250-332 3 5
AE0250-337 3
AE0250-339 4 5
Minnewashta 3 4
Autumn Crisp 3
G-14-066 3 4
Lu1-11-010 3 8
Lu1-11-013 3
Lu1-11-016 3
Lu1-11-017 3 8
Lu1-11-018 3
NJ 90 5 8
Lord Lambourne 3 4
Antonovka GH 17 8
Grimes Golden 3
Kidds Orange Red 3 8
Malus baccata Hansen #2 40 41
Malus baccata Jackii 14
Summerred 3 4
William's Pride 4 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-15Apple-RosBREED-3.9K-2019911.7211.95
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142
RosBREEDSNP_SNP_AG_5973848_Lg9_01603_MAF30_1675553_exon1AABBAAAABABAA--BABA--A-B-BBAA---BAAA-BABB
RosBREEDSNP_SNP_CT_5961724_Lg9_01603_MAF10_MDP0000282003_exon1BBBABBBBABABB--BB-BBBBBB-BBBAB--ABAABBBAB
RosBREEDSNP_SNP_CT_5966501_Lg9_01603_MAF30_26840_exon1-BBBABBBBABBABAB-BBBB--BB---AB---AAAAAABB
RosBREEDSNP_SNP_TC_5964010_Lg9_01603_MAF40_1673906_exon4AABBABB---BAA--ABBABAA---BBAAB--BABAAABAB
RosBREEDSNP_SNP_TC_5969202_Lg9_01603_MAF20_583681_exon4-AAAB-AAAB--A--A-ABAAA-AA-ABB-AB--BAABAA-
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:6775808..6787938. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation