Mdo-HB-09-14

Haplotype Block Overview
Name Mdo-HB-09-14
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 6 8
Jonafree 4
Redfree 4 7
Spartan 4 7
Wagener 4 8
Worcester Pearmain 8
Tsugaru 5 7
Golden Delicious 4 5
Fuji 10 5
Empire 4 7
Gala 4
Honeycrisp 4 6
Elstar 4 5
Marshall McIntosh 6 7
Cripps Pink 5 7
Granny Smith 6
Jonathan 4 7
Ralls Janet 10 9
Delicious 4 5
Discovery 6 8
Prima 5 8
821 4 8
Fiesta 4 7
Ingrid Marie 4
Idared 4 7
Esopus Spitzenburg 7 8
Braeburn 4 5
Sansa 4 8
Lodi 4 8
James Grieve 4 7
Cripps Red 5 6
Burgundy 6 8
Akane 4 8
Ambrosia 4
Aurora Golden Gala 4
Beacon 22 4
Ben Davis 12 4 5
Cameo 4 5
Chinook 4
Clivia 10 4
Co-op 17 4 7
Co-op 18 4
Dayton 4 7 8
Delblush 4
Delorgue 4 5
Dolgo 7 8
Geheimrat Dr. Oldenburg 10 6
Duchess of Oldenburg 4 6
Early Cortland 12 7 8
Empress 4 7
F2 26829-2-2 4 5
Fantazja 4 6
Fireside 4 7
Fortune 4 6
Frostbite 6 7
Ginger Gold 5 8
GMAL 4327 8
GMAL 4328 4 8
GMAL 4329 7 8
GMAL 4332 4 8
Goodland 6 7
Haralson 4 7
Honeygold 4 7
Hudson 4 8
Jersey Black 2 8
Jonamac 7
Keepsake 4 7
Kerr 7 8
Lady Williams 6 7
Liberty 5 7
Linda 4 7
Longfield 7 8
Macoun 7 8
Malinda 7 8
Mantet 10 18
Melba 7
Melrose 4 5
MN 1627 4 6
MN 1628 4 6
MN 1691 4 7
MN 1706 30 8
MN 1708 6 7
MN 1760 7 8
MN 1764 7 8
MN 1789 4 6
MN 1802 4 6
MN 1836 10 7
MN 1837 4 6
MN 1839 4
MN 1888 4
MN 1899 4 6
MN 1940 7
MN 2016 10 5
AA-44 7
Monroe 7 8
Montgomery 10 8
Nicola 4
NJ 31 4
NJ 53 6 8
Oriole 4 7
PRI 14-126 4 5
PRI 14-510 5
PRI 1661-2 4 6
PRI 54-12 5 7
PRI 855-102 4
Primula 4 7
Raritan 7
Regent 4 6
Russian Seedling 8
Sawa 6 7
Sciros 4
Sharon 4 6
Silken 4 5
Wildung 4 7
Splendour 4
State Fair 10 4
NJ 55 4
Co-op 29 5 6
Sunrise 5 7
Sweet Sixteen 4 6
Topaz 4 5
Vista Bella 4 8
Wealthy 4 7
Winesap 4
Winter Banana 5 6
Yellow Newtown 4 8
Yellow Transparent 4
0407-0001 4 5
0407-0005 4
0407-0006 4
0407-0007 4
0407-0008 4 5
0408-0003 4 7
0408-0004 4 7
0408-0005 4 6
0408-0007 4 6
0408-0008 4 7
0408-0010 4 6
0408-0011 4 7
0408-0014 4 6
0408-0015 4 7
0409-0022 4
0409-0024 4 6
0409-0028 4
0409-0030 4
0409-0032 4
0409-0035 4
0409-0036 4 6
0409-0038 4 6
0409-0039 4
0409-0040 4
0409-0043 4
0409-0045 4
0410-0002 4 6
0410-0003 4 6
0410-0005 4 6
0410-0006 4 6
0410-0010 4 6
0410-0011 4 6
0410-0012 4 6
0410-0013 4 6
0410-0015 4 6
0410-0017 4 6
0410-0018 4 6
0414-0010 5 6
0414-0015 4 5
0414-0017 4 6
0414-0018 6 7
0414-0019 4
0414-0020 4 7
0414-0021 5 6
0415-0001 4 7
0415-0004 6
0415-0005 6 7
0415-0011 6
0415-0012 4 7
0415-0013 4 7
0415-0014 6 7
0415-0016 4 6
0415-0017 4 7
0415-0019 6
0415-0020 6
0415-0025 4 6
AE_HCxJonf-145 4 6
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4 6
AE_HCXJonf-168 5 6
AE_HCxJonf-175 4 6
AE_HCxJonf-183 4
AE_HCxJonf-185 4 6
AE0118-237 4 6
AE0118-238 6
AE0118-239 4
AE0118-240 4 6
AE0118-243 4
AE0118-244 4
AE0118-245 4 6
AE0118-246 4
AE0118-249 4 6
AE0206-159 10 4
AE0206-160 10 4
AE0206-161 10 4
AE0206-162 10 4
AE0206-163 4 7
AE0206-164 4 7
AE0206-165 4 7
AE0206-167 4 7
AE0206-168 4 7
AE0206-169 10 4
AE0206-170 4 7
AE0210-146 7
AE0210-147 5 7
AE0210-149 7 8
AE0210-150 5 8
AE0210-151 5 8
AE0210-152 10 7
AE0210-153 7
AE0210-154 5 8
AE0210-157 7
AE0210-158 5 7
AE0210-159 7 8
AE0210-162 5 7
AE0210-163 5 7
AE0210-164 7
AE0210-165 5 8
AE0210-166 7 8
AE0210-168 5 7
AE0210-169 5 7
AE0210-170 5 8
AE0210-171 7
AE0210-172 5 8
AE0210-173 7 8
AE0210-174 7
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 8
AE0213-179 4 8
AE0213-180 8
AE0213-181 4 5
AE0213-182 4 8
AE0213-183 8
AE0213-186 4 8
AE0213-187 5 8
AE0213-190 5 8
AE0213-193 5 8
AE0213-194 5 8
AE0213-195 5 8
AE0213-196 4 8
AE0213-197 5 8
AE0213-198 5 8
AE0213-199 8
AE0213-200 4 8
AE0213-201 4 8
AE0213-202 4 8
AE0213-205 8
AE0213-206 4 8
AE0251-323 4
AE0251-325 4 6
AE0251-327 4
AE0251-329 4
AE0251-330 4 6
AE0251-331 4
AE0251-342 4
AE0251-343 4 6
AE0406-239 4 5
AE0406-254 4
AE0406-258 4 6
AE0406-259 4 6
AE0406-263 4 5
AE0406-264 4 5
AE0406-266 4 6
AE0406-271 4 7
AE0406-274 5 6
AE0406-278 4
AE0406-281 5 6
AE0406-286 4
AE0406-288 4 6
AE0406-289 4 5
AE0406-294 4
AE0406-298 4
Minneiska 6 7
NJ 303955 4
PRI 612-1 4
Arlet 4 5
Co-op 39 7
Pinova 10 5
Scired 4
Scifresh 4 5
0409-0025 4 6
0409-0026 4 6
0409-0027 4
0409-0031 4
0409-0033 4 6
0409-0047 4
G-14-050 10 5
G-14-052 10 5
G-14-054 5
G-14-055 5
G-14-056 5
G-14-057 10 5
G-14-059 10 5
G-14-060 5
G-14-061 10 5
G-14-062 5
G-14-064 10 5
G-14-065 5
G-14-069 10 5
G-14-067 5
G-14-068 5
G-14-071 5
G-14-073 10 5
G-14-074 10 5
G-14-075 5
G-14-076 10 5
G-14-077 5
G-14-078 5
G-14-080 10 5
G-09-232 4 5
G-09-233 5
G-09-234 5 8
G-09-235 4 5
G-09-236 5
G-09-237 4 8
G-09-238 4 5
G-09-239 4 5
G-09-240 5 8
G-09-241 4 5
G-09-242 4 8
G-09-243 5
G-09-245 5
G-09-246 4 5
G-09-258 4 5
G-09-259 4 8
G-09-260 5
G-09-261 4 8
G-09-262 5 8
G-09-263 4 8
G-09-264 5
G-09-265 5
G-09-266 5 8
G-09-267 5 8
G-09-268 4 5
0408-0021 4 7
Wijcik McIntosh 30 8
Beauty of Bath 31 6
Priam 4
Northern Spy 4 8
Co-op 15 4 7
MN 1702 6 7
WA 2 4
WA 5 4 7
Pitmaston Pineapple 4 8
0411-0011 4 7
0411-0017 5 6
0411-0023 5 6
AE0250-086 4
AE0250-087 4
AE0250-089 4 6
AE0250-090 4 6
AE0250-092 4 6
AE0250-093 4
AE0250-094 4 6
AE0250-095 4 6
Sonya 4
Co-op 38 4 5
AE0250-096 4 7
AE0250-327 4 7
Co-op 30 6 7
Jonagrimes 3 4
AE0211-036 4 8
G-07-039 6 8
PRI 14-152 5
PRI 47-176 4 5
G-07-041 4 5
BC-8S-27-43 4
AE0250-091 6 8
AE0250-097 4 8
AE0250-325 4 8
AE0250-326 6 8
AE0250-329 6 8
AE0250-333 4 8
AE0250-334 4 8
AE0250-335 4 8
AE0250-336 4 8
AE0250-338 4 8
AE0250-341 6 8
AE0211-038 5 8
AE0211-043 4 5
AE0211-045 4 8
AE0211-051 5 8
G-07-010 4 6
G-07-014 6 8
G-07-015 4 6
G-07-019 6 8
G-07-020 6 8
G-07-024 6 8
G-07-032 6 8
G-07-033 6 8
G-07-034 6 8
G-07-035 6 8
G-07-044 4 6
AE0211-053 10 5
AE0211-054 10 8
AE0250-088 10 6
AE0250-324 10 6
AE0250-328 6 7
AE0250-331 10 4
AE0250-332 6 7
AE0250-337 4 7
AE0250-339 10 6
Minnewashta 10 7
Autumn Crisp 5 8
G-14-066 10 5
Lu1-11-010 10 4
Lu1-11-013 5 7
Lu1-11-016 10 7
Lu1-11-017 4 5
Lu1-11-018 10 7
NJ 90 4 6
Lord Lambourne 4 8
Antonovka GH 35 4
Grimes Golden 3 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 35 4
Malus baccata Jackii 8
Summerred 31 7
William's Pride 4 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-14Apple-RosBREED-3.9K-2019911.0211.05
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536
GDsnp00514BBBABBBBBBABAB--BB--BBBB--BAB--BAB-
RosBREEDSNP_SNP_CT_5387010_Lg9_00514_MAF40_377304_exon1BABBBAAAB-BB--B----AABBB----BBBAAAA
RosBREEDSNP_SNP_CT_5412776_Lg9_00514_MAF10_1684807_exon3--BBBBB-ABBBBBBBBAB-B-AB--BBB--BBB-
RosBREEDSNP_SNP_TC_5399131_Lg9_00514_MAF30_1663095_exon2AAAAABABAAABAAA----ABAAA----BAAAAAB
RosBREEDSNP_SNP_TG_5372070_Lg9_00514_MAF20_1646977_exon3AAAABAAAA-BAAAAA---ABB--ABAABAB-ABA
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:6069923..6119628. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation