Mdo-HB-09-12

Haplotype Block Overview

Name	Mdo-HB-09-12
Species	Malus x domestica
Stock Haplotype	[view all 428]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	4
Rome Beauty Law	4 5
Jonafree	5 9
Redfree	4 5
Spartan	4 6
Wagener	5 6
Worcester Pearmain	5 8
Tsugaru	4 6
Golden Delicious	4
Fuji	4 9
Empire	4 6
Gala	4
Honeycrisp	5
Elstar	4
Marshall McIntosh	5 6
Cripps Pink	4 6
Granny Smith	5
Jonathan	6 9
Ralls Janet	8 9
Delicious	4
Prima	4
821	11 6
Fiesta	4 6
Ingrid Marie	4
Idared	5 6
Esopus Spitzenburg	4 6
Braeburn	4
Sansa	4 5
Lodi	4
James Grieve	4 6
Cripps Red	4 5
Burgundy	4 9
Akane	5 9
Ambrosia	4
Aurora Golden Gala	4
Beacon	5 6
Ben Davis	4 5
Cameo	4
Chinook	4
Clivia	4 5
Co-op 17	4 5
Co-op 18	5 9
Dayton	4 6
Delblush	4
Delorgue	4 9
Dolgo	17 6
Geheimrat Dr. Oldenburg	5
Duchess of Oldenburg	4 5
Early Cortland	4 5 6
Empress	4 6
F2 26829-2-2	11 4
Fantazja	5
Fireside	4 6
Fortune	4 5
Frostbite	5 6
Ginger Gold	4
GMAL 4327	10 4
GMAL 4328	4 9
GMAL 4329	6 9
GMAL 4332	4
Goodland	5 6
Haralson	5 6
Honeygold	4 6
Hudson	4 6
Jersey Black	3 5
Jonamac	6
Keepsake	5 6
Kerr	17 6
Lady Williams	5 6
Liberty	4 6
Linda	5 6
Liveland Raspberry	4 6
Longfield	4 5
Macoun	5 6
Malinda	6
Mantet	4
Melba	6
Melrose	4 9
MN 1627	4 5
MN 1628	5
MN 1691	4 6
MN 1706	5 6
MN 1708	5 6
MN 1760	6
MN 1764	6
MN 1789	4 5
MN 1802	5
MN 1836	4 6
MN 1837	4 5
MN 1839	4 5
MN 1888	4
MN 1899	5
MN 1940	6
MN 2016	4
AA-44	6
Monroe	4 6
Montgomery	4 5
Nicola	4
NJ 31	5
NJ 53	4 5
Oriole	4 5
PRI 14-126	4
PRI 14-510	4
PRI 1661-2	4 5
PRI 54-12	4 6
PRI 855-102	9
Primula	4 6
Raritan	6
Regent	5
Russian Seedling	4 9
Sawa	5 6
Sciros	4
Sharon	4 5
Silken	4
Wildung	4 6
Splendour	4
State Fair	4 5
NJ 55	4
Co-op 29	4 5
Sunrise	4 6
Sweet Sixteen	5
Topaz	4
Vista Bella	4
Wealthy	5 6
Winesap	4
Winter Banana	6 9
Yellow Newtown	4 6
Yellow Transparent	4 6
0407-0001	4
0407-0005	4 5
0407-0006	4 5
0407-0007	4 5
0407-0008	4
0408-0003	4 6
0408-0004	4 6
0408-0005	4 5
0408-0007	4 5
0408-0008	4 5
0408-0010	4 5
0408-0011	4 6
0408-0014	4 5
0408-0015	4 6
0409-0022	4 5
0409-0024	4 5
0409-0028	4 5
0409-0030	4 5
0409-0032	4 5
0409-0035	4 5
0409-0036	4 5
0409-0038	4 5
0409-0039	4 5
0409-0040	4 5
0409-0043	4 5
0409-0045	4 5
0410-0002	4 5
0410-0003	4 5
0410-0005	4 5
0410-0006	4 5
0410-0010	4 5
0410-0011	4 5
0410-0012	4 5
0410-0013	4 5
0410-0015	4 5
0410-0017	4 5
0410-0018	4 5
0414-0010	4 5
0414-0015	4 5
0414-0017	5
0414-0018	5 6
0414-0019	5
0414-0020	5 6
0414-0021	4 5
0415-0001	5 6
0415-0004	5
0415-0005	5 6
0415-0011	5
0415-0012	5 6
0415-0013	5 6
0415-0014	5 6
0415-0016	5
0415-0017	5 6
0415-0019	5
0415-0020	5
0415-0025	5
AE_HCxJonf-145	5 9
AE_HCXJonf-148	5 9
AE_HCXJonf-162	5
AE_HCXJonf-168	4 5
AE_HCxJonf-175	5
AE_HCxJonf-183	5 9
AE_HCxJonf-185	5 9
AE0118-237	5
AE0118-238	5
AE0118-239	5
AE0118-240	5
AE0118-243	5
AE0118-244	5
AE0118-245	5
AE0118-246	5
AE0118-249	5
AE0206-159	4
AE0206-160	4
AE0206-161	4
AE0206-162	4
AE0206-163	4 6
AE0206-164	4 6
AE0206-165	4 6
AE0206-167	4 6
AE0206-168	4 6
AE0206-169	4
AE0206-170	4 6
AE0210-146	6
AE0210-147	4 6
AE0210-149	6 9
AE0210-150	4 9
AE0210-151	4 9
AE0210-152	4 6
AE0210-153	6
AE0210-154	4 9
AE0210-157	6
AE0210-158	4 6
AE0210-159	6 9
AE0210-162	4 6
AE0210-163	4 6
AE0210-164	6
AE0210-165	4 9
AE0210-166	4 9
AE0210-168	4 6
AE0210-169	4 6
AE0210-170	4 9
AE0210-171	6
AE0210-172	4 9
AE0210-173	6 9
AE0210-174	6
AE0213-175	4
AE0213-176	4
AE0213-177	4
AE0213-178	4
AE0213-179	4
AE0213-180	4
AE0213-181	4
AE0213-182	4
AE0213-183	4
AE0213-186	4
AE0213-187	4
AE0213-190	4
AE0213-193	4
AE0213-194	4
AE0213-195	4
AE0213-196	4
AE0213-197	4
AE0213-198	4 9
AE0213-199	4
AE0213-200	4
AE0213-201	4
AE0213-202	4
AE0213-205	4
AE0213-206	4
AE0251-323	4 5
AE0251-325	4 5
AE0251-327	4 5
AE0251-329	4 5
AE0251-330	4 5
AE0251-331	4 5
AE0251-342	4 5
AE0251-343	4 5
AE0406-239	4 5
AE0406-254	4 5
AE0406-258	4 5
AE0406-259	4 5
AE0406-263	4 5
AE0406-264	4 5
AE0406-266	4 5
AE0406-271	5 6
AE0406-274	4 5
AE0406-278	4 5
AE0406-281	4 5
AE0406-286	4 5
AE0406-288	4 5
AE0406-289	4 5
AE0406-294	4 5
AE0406-298	4 5
Minneiska	5 6
NJ 303955	4
PRI 612-1	4
Arlet	4 5
Co-op 39	6
Pinova	4 5
Scired	4
Scifresh	4
0409-0025	4 5
0409-0026	4 5
0409-0027	4 5
0409-0031	4 5
0409-0033	4 5
0409-0047	4 5
G-14-050	4 5
G-14-052	4 5
G-14-054	4
G-14-055	4
G-14-056	4
G-14-057	4 5
G-14-059	4 5
G-14-060	4
G-14-061	4 5
G-14-062	4
G-14-064	4 5
G-14-065	4
G-14-069	4 5
G-14-067	4
G-14-068	4
G-14-071	4
G-14-073	4 5
G-14-074	4 5
G-14-075	4
G-14-076	4 5
G-14-077	4
G-14-078	4
G-14-080	4 5
G-09-232	4
G-09-233	4
G-09-234	4
G-09-235	4
G-09-236	4
G-09-237	4
G-09-238	4
G-09-239	4
G-09-240	4
G-09-241	4
G-09-242	4
G-09-243	4
G-09-245	4
G-09-246	4
G-09-258	4
G-09-259	4
G-09-260	4
G-09-261	4
G-09-262	4
G-09-263	4
G-09-264	4
G-09-265	4
G-09-266	4
G-09-267	4
G-09-268	4
0408-0021	4 6
Wijcik McIntosh	5 6
Beauty of Bath	6 7
Priam	4 9
Northern Spy	5 6
Co-op 15	4 6
MN 1702	5 6
WA 2	4
WA 5	4 6
Pitmaston Pineapple	4 6
0411-0011	4 6
0411-0017	4 5
0411-0023	4 5
AE0250-086	4 5
AE0250-087	4 5
AE0250-089	4 5
AE0250-090	4 5
AE0250-092	4 5
AE0250-093	4 5
AE0250-094	4 5
AE0250-095	4 5
Sonya	4
Co-op 38	4
AE0250-096	4 6
AE0250-327	4 6
Co-op 30	5 6
Jonagrimes	4
AE0211-036	4
G-07-039	5
PRI 14-152	4
PRI 47-176	4 9
G-07-041	4
BC-8S-27-43	4
AE0250-091	10 5
AE0250-097	10 5
AE0250-325	4 5
AE0250-326	4 5
AE0250-329	4 5
AE0250-333	10 5
AE0250-334	10 5
AE0250-335	4 5
AE0250-336	4 5
AE0250-338	4 5
AE0250-341	10 5
AE0211-038	4 9
AE0211-043	4
AE0211-045	4
AE0211-051	4 9
G-07-010	4 5
G-07-014	5
G-07-015	4 5
G-07-020	5
G-07-024	5
G-07-032	5
G-07-033	5
G-07-034	5
G-07-035	5
G-07-044	4 5
AE0211-053	4
AE0211-054	4
AE0250-088	4 5
AE0250-324	4 5
AE0250-328	5 6
AE0250-331	4 5
AE0250-332	5 6
AE0250-337	5 6
AE0250-339	4 5
Minnewashta	4 6
Autumn Crisp	4
G-14-066	4 5
Lu1-11-010	4 9
Lu1-11-013	4 6
Lu1-11-016	4 9
Lu1-11-017	4
Lu1-11-018	6 9
NJ 90	4 5
Lord Lambourne	4 5
Antonovka GH	4 9
Grimes Golden	2 4
Kidds Orange Red	4
Malus baccata Hansen #2	21 5
Malus baccata Jackii	17 4
Summerred	4 8
William's Pride	4 6

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-09-12	Apple-RosBREED-3.9K-2019	9	9.22	9.45

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21
RosBREEDSNP_SNP_CT_4685551_Lg9_RosCOS3253_MAF30_MDP0000321404_exon7	A	B	B	A	B	A	B	A	B	A	B	-	A	-	-	B	-	-	A	A
RosBREEDSNP_SNP_CT_4724101_Lg9_RosCOS3253_MAF10_MDP0000291561_exon9	-	-	B	B	B	-	-	B	A	A	B	B	B	B	B	A	-	-	A	A
RosBREEDSNP_SNP_GA_4699317_Lg9_RosCOS3253_MAF50_1669813_exon1	A	B	B	A	A	B	A	B	A	A	-	-	-	B	A	B	A	B	-	B

Alignments

Feature Name	Type	Location	Analysis
Chr09	chromosome	Chr09:5412313..5467458.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation