Mdo-HB-09-10

Haplotype Block Overview
Name Mdo-HB-09-10
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 11
Rome Beauty Law 11 12
Jonafree 12 20
Redfree 28 40
Spartan 16 6
Wagener 12 7
Worcester Pearmain 12
Tsugaru 16 5
Golden Delicious 4 5
Fuji 11 6
Empire 16 6
Gala 11 5
Honeycrisp 12 7
Elstar 11 5
Marshall McIntosh 16 6
Cripps Pink 5 7
Granny Smith 11 7
Jonathan 16 20
Ralls Janet 11 2
Delicious 11 6
Discovery 12 15
Prima 12 5
821 10 12
Fiesta 11 16
Ingrid Marie 11
Idared 12 16
Esopus Spitzenburg 11 16
Braeburn 11
Sansa 12 5
Lodi 11 6
James Grieve 10 11
Cripps Red 5 7
Burgundy 12 35
Akane 12 20
Ambrosia 11 4
Aurora Golden Gala 5 6
Beacon 19 7
Ben Davis 11 4 5
Cameo 5 6
Chinook 11 6
Clivia 11 6
Co-op 17 4 7
Co-op 18 10 16
Dayton 12 16 6
Delblush 11 4
Delorgue 20 5
Dolgo 10 15
Geheimrat Dr. Oldenburg 6 7
Duchess of Oldenburg 6 7
Early Cortland 11 16
Empress 16 6
F2 26829-2-2 12 5
Fantazja 6 7
Fireside 10 16
Fortune 11 7
Frostbite 10 7
Ginger Gold 11 5
GMAL 4327 11 12
GMAL 4328 12 6
GMAL 4329 12
GMAL 4332 12 6
Goodland 16 7
Haralson 12 7
Honeygold 12 4
Hudson 11 6
Jersey Black 12 15
Jonamac 16
Keepsake 10 12
Kerr 10 12
Lady Williams 10 7
Liberty 16 5
Linda 16 7
Longfield 11 50
Macoun 12 16
Malinda 10 12
Mantet 5
Melba 16 19
Melrose 11 20
MN 1627 4 7
MN 1628 11 7
MN 1691 10 16
MN 1706 19 7
MN 1708 10 7
MN 1760 10 11
MN 1764 11 16
MN 1789 10 7
MN 1802 10 7
MN 1836 10 5
MN 1837 10 7
MN 1839 4 7
MN 1888 10 7
MN 1899 7
MN 1940 10 16
MN 2016 5
AA-44 10 16
Monroe 12 16
Montgomery 11 6
Nicola 11 6
NJ 31 12
NJ 53 11 12
Oriole 19 7
PRI 14-126 4 5
PRI 14-510 5
PRI 1661-2 4 6
PRI 54-12 5 7
PRI 855-102 20
Primula 19 4
Raritan 16 19
Regent 6 7
Russian Seedling 12
Sawa 19 6
Sciros 5 6
Sharon 6
Silken 4 5
Wildung 16 6
Splendour 4 6
State Fair 5 7
NJ 55 11 4
Co-op 29 5 6
Sunrise 19 5
Sweet Sixteen 12 7
Topaz 5 6
Vista Bella 12 6
Wealthy 16 7
Winesap 11 6
Winter Banana 5 6
Yellow Newtown 20 6
Yellow Transparent 19 6
0407-0001 5 6
0407-0005 5
0407-0006 12 6
0407-0007 12 6
0407-0008 5
0408-0003 16 5
0408-0004 16 5
0408-0005 5 6
0408-0007 5 6
0408-0008 6
0408-0010 5 6
0408-0011 16 6
0408-0014 6
0408-0015 16 5
0409-0022 12 5
0409-0024 5 7
0409-0028 12 5
0409-0030 12 6
0409-0032 12 5
0409-0035 12 5
0409-0036 6 7
0409-0038 6 7
0409-0039 12 6
0409-0040 12 5
0409-0043 12 6
0409-0045 12 6
0410-0002 11 5
0410-0003 6 7
0410-0005 5 7
0410-0006 6 7
0410-0010 5 7
0410-0011 11 6
0410-0012 6 7
0410-0013 5 7
0410-0015 5 7
0410-0017 6 7
0410-0018 5 7
0414-0010 5 7
0414-0015 12 5
0414-0017 12 7
0414-0018 16 7
0414-0019 12
0414-0020 12 16
0414-0021 5 7
0415-0001 12 16
0415-0004 6 7
0415-0005 16 7
0415-0011 6 7
0415-0012 12 16
0415-0013 12 16
0415-0014 16 7
0415-0016 12 6
0415-0017 16 7
0415-0019 6 7
0415-0020 16 7
0415-0025 12 6
AE_HCxJonf-145 20 7
AE_HCXJonf-148 12 20
AE_HCxJonf-157 12
AE_HCXJonf-162 12 7
AE_HCXJonf-168 5 7
AE_HCxJonf-175 12 7
AE_HCxJonf-183 12 20
AE_HCxJonf-185 20 7
AE0118-237 6 7
AE0118-238 6 7
AE0118-239 12 7
AE0118-240 12 6
AE0118-243 12 7
AE0118-244 12 7
AE0118-245 7
AE0118-246 12 7
AE0118-249 12 6
AE0206-159 11 5
AE0206-160 11 5
AE0206-161 5 6
AE0206-162 5 6
AE0206-163 10 6
AE0206-164 10 11
AE0206-165 10 11
AE0206-167 10 11
AE0206-168 10 11
AE0206-169 11 5
AE0206-170 10 6
AE0210-146 12 19
AE0210-147 12 19
AE0210-149 12 19
AE0210-150 12 5
AE0210-151 12 5
AE0210-152 19 5
AE0210-153 12 19
AE0210-154 12 5
AE0210-157 12 19
AE0210-158 12 5
AE0210-159 12 19
AE0210-162 12 5
AE0210-163 12 5
AE0210-164 12 19
AE0210-165 12 5
AE0210-166 12 5
AE0210-168 12 5
AE0210-169 12 5
AE0210-170 12 5
AE0210-171 12 19
AE0210-172 12 5
AE0210-173 12 19
AE0210-174 12 19
AE0213-175 11 6
AE0213-176 5 6
AE0213-177 5 6
AE0213-178 11 12
AE0213-179 11 6
AE0213-180 11 12
AE0213-181 5 6
AE0213-182 12 5
AE0213-183 11 12
AE0213-186 11 6
AE0213-187 11 12
AE0213-190 12 5
AE0213-193 11 12
AE0213-194 11 12
AE0213-195 12 5
AE0213-196 11 6
AE0213-197 12 5
AE0213-198 12 5
AE0213-199 11 12
AE0213-200 11 6
AE0213-201 11 6
AE0213-202 11 6
AE0213-205 11 12
AE0213-206 11 6
AE0251-323 11 12
AE0251-325 12 6
AE0251-327 11 12
AE0251-329 11 12
AE0251-330 11 7
AE0251-331 12 6
AE0251-342 11 12
AE0251-343 11 7
AE0406-239 12 5
AE0406-254 12 4
AE0406-258 4 7
AE0406-259 4 7
AE0406-263 12 5
AE0406-264 12 5
AE0406-266 4 7
AE0406-271 12 7
AE0406-274 5 7
AE0406-278 12 4
AE0406-281 5 7
AE0406-286 12 4
AE0406-288 4 7
AE0406-289 12 5
AE0406-294 12 4
AE0406-298 12 4
Minneiska 10 7
NJ 303955 11
PRI 612-1 4 6
Arlet 12 5
Co-op 39 16
Pinova 5 6
Scired 11 4
Scifresh 11 5
0409-0025 5 7
0409-0026 6 7
0409-0027 12 5
0409-0031 12 5
0409-0033 5 7
0409-0047 12 5
G-14-050 6
G-14-052 12 6
G-14-054 12 5
G-14-055 12 5
G-14-056 5 6
G-14-057 6
G-14-059 6
G-14-060 12 5
G-14-061 12 6
G-14-062 5 6
G-14-064 6
G-14-065 5 6
G-14-069 6
G-14-067 5 6
G-14-068 12 6
G-14-071 5 6
G-14-073 6
G-14-074 6
G-14-075 5 6
G-14-076 6
G-14-077 12 5
G-14-078 12 5
G-14-080 12 6
G-09-232 11 5
G-09-233 11 5
G-09-234 11
G-09-235 11 5
G-09-236 11 5
G-09-237 11
G-09-238 11 5
G-09-239 11 5
G-09-240 11
G-09-241 11 5
G-09-242 11
G-09-243 11 5
G-09-245 11 5
G-09-246 11
G-09-258 11 5
G-09-259 11
G-09-260 11 5
G-09-261 11 5
G-09-262 11
G-09-263 11
G-09-264 11 5
G-09-265 11 5
G-09-266 11
G-09-267 11
G-09-268 11 5
0408-0021 16 5
Wijcik McIntosh 20 5
Beauty of Bath 15
Priam 20 4
Northern Spy 11 12
Co-op 15 19 6
MN 1702 16 7
WA 2 5 6
WA 5 19 4
Pitmaston Pineapple 10 11
0411-0011 16 5
0411-0017 5 6
0411-0023 5 6
AE0250-086 11 12
AE0250-087 12 6
AE0250-089 11 7
AE0250-090 6 7
AE0250-092 6 7
AE0250-093 6 7
AE0250-094 11 7
AE0250-095 11 7
Sonya 11
Co-op 38 4 5
AE0250-096 10 16
AE0250-327 10 16
Co-op 30 16 6
Jonagrimes 4 7
AE0211-036 11 6
G-07-039 12 7
PRI 14-152 5
G-07-041 12 6
BC-8S-27-43 11 6
AE0250-091 12 7
AE0250-097 12
AE0250-325 11 12
AE0250-326 11 7
AE0250-329 11 7
AE0250-333 12
AE0250-334 12
AE0250-335 11 12
AE0250-336 11 12
AE0250-338 11 12
AE0250-341 12 7
AE0211-038 12 5
AE0211-043 5 6
AE0211-045 11 6
AE0211-051 5 6
G-07-010 5 7
G-07-014 5 7
G-07-015 5 7
G-07-019 11 12
G-07-020 11 12
G-07-024 11 12
G-07-032 12 7
G-07-033 12 7
G-07-034 11 12
G-07-035 12 7
G-07-044 5 7
AE0211-053 5
AE0211-054 11 5
AE0250-088 5 7
AE0250-324 12 5
AE0250-328 10 7
AE0250-331 12 5
AE0250-332 10 7
AE0250-337 10 12
AE0250-339 5 7
Minnewashta 10 5
Autumn Crisp 12 5
G-14-066 12 6
Lu1-11-010 11
Lu1-11-013 16 6
Lu1-11-016 11
Lu1-11-017 11 6
Lu1-11-018 11 16
NJ 90 11 6
Lord Lambourne 11 12
Antonovka GH 12 49
Grimes Golden 2 4
Kidds Orange Red 11
Malus baccata Hansen #2 12 7
Malus baccata Jackii 51
Summerred 10 46
William's Pride 10 19
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-09-10Apple-RosBREED-3.9K-201997.67.6
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455
GDsnp01524BAABBB--BBBBBBBBABBBBBABB-BBBBB-BBB--BBBBBBA--ABBB-B--
RosBREEDSNP_SNP_AG_3790925_Lg9_00605_MAF20_MDP0000264662_exon16--AAABBAAAAAA-AAAAA-BAABAAAB----AB-ABAAAAA-AABABB-AA--
RosBREEDSNP_SNP_AG_3818449_Lg9_01524_MAF50_MDP0000305191_exon1--ABAB--AAB---B--BA-BBB---AA-BB--B-AB-B---A-BAAABAAABA
RosBREEDSNP_SNP_GA_3788429_Lg9_00605_MAF40_382876_exon1ABBBBBBBABABBBA-BBAA--BBB--B-BBAABB--A---ABBBBABAAA---
RosBREEDSNP_SNP_GA_3797355_Lg9_00605_MAF40_359797_exon2ABBAAB--ABABABB-BBBBBABB--BB-BAAAAA---BBABA-BBBAAAAA--
Alignments
Feature NameTypeLocationAnalysis
Chr09 chromosome Chr09:4198311..4228824. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation