Mdo-HB-08-7

Haplotype Block Overview
Name Mdo-HB-08-7
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 23 5
Rome Beauty Law 4 5
Jonafree 4 5
Redfree 6 70
Spartan 10 5
Wagener 4 5
Worcester Pearmain 5 6
Tsugaru 5 6
Golden Delicious 4 5
Fuji 10 5
Empire 10 5
Gala 10 5
Honeycrisp 4 6
Elstar 5
Marshall McIntosh 14 5
Cripps Pink 11 4
Granny Smith 10 11
Jonathan 4 6
Ralls Janet 3 5
Delicious 10 9
Discovery 5 6
Prima 5 6
821 18 5
Fiesta 5
Ingrid Marie 4 5
Idared 4 5
Esopus Spitzenburg 10 4
Braeburn 10 20
Sansa 10 6
Lodi 10 5
James Grieve 23 5
Cripps Red 11 5
Burgundy 4 5
Akane 5 6
Ambrosia 10 5
Aurora Golden Gala 10 5
Beacon 5 6
Ben Davis 20 21 5 6
Cameo 10 5
Chinook 10
Clivia 20 23
Co-op 17 4 9
Co-op 18 4 5
Dayton 14 21 5
Delblush 5 6
Delcorf 4
Delorgue 4 5
Dolgo 42 5
Geheimrat Dr. Oldenburg 20 21
Duchess of Oldenburg 6 7
Early Cortland 10 14 21
Empress 10 6
F2 26829-2-2 21 5
Fantazja 14 5
Fireside 5 6
Fortune 11 5
Frostbite 4 8
Ginger Gold 10 5
GMAL 4327 5
GMAL 4328 5 9
GMAL 4329 5 9
GMAL 4332 5 9
Goodland 11 14
Haralson 5 6
Honeygold 4 5
Hudson 10 5
Jersey Black 26 5
Jonamac 5 6
Keepsake 6 8
Kerr 5
Lady Williams 11 4
Liberty 5 6
Linda 5 6
Liveland Raspberry 42 5
Longfield 5 8
Macoun 5
Malinda 10 5
Mantet 5
Melba 14 42
Melrose 4 9
MN 1627 4 7
MN 1628 5 8
MN 1691 11 5
MN 1706 13 54
MN 1708 4 8
MN 1760 4 5
MN 1764 4 5
MN 1789 4 5
MN 1802 6 8
MN 1836 6 8
MN 1837 11 7
MN 1839 4 5
MN 1888 4 5
MN 1899 14 8
MN 1940 10 5
MN 2016 4 5
AA-44 4 5
Monroe 4 5
Montgomery 10 5
Nicola 10 5
NJ 31 5
NJ 53 10 44
Oriole 5 6
PRI 14-126 21 5
PRI 14-510 21 5
PRI 1661-2 5
PRI 54-12 21 6
PRI 855-102 4
Primula 4 42
Raritan 14
Regent 14 5
Russian Seedling 5
Sawa 4 5
Sciros 10 5
Sharon 14 6
Silken 4 5
Wildung 14 5
Splendour 10 5
State Fair 5 6
NJ 55 21 5
Co-op 29 10 4
Sunrise 5
Sweet Sixteen 4 5
Topaz 5 6
Vista Bella 10 6
Wealthy 6
Winesap 6 9
Winter Banana 10 20
Yellow Newtown 31 73
Yellow Transparent 10 5
0407-0001 10 4
0407-0005 10 4
0407-0006 4 5
0407-0007 10 4
0407-0008 10 4
0408-0003 5
0408-0004 5
0408-0005 4 5
0408-0007 4 5
0408-0008 4 5
0408-0010 4 5
0408-0011 10 4
0408-0014 4 5
0408-0015 10 5
0409-0022 5 6
0409-0024 4 5
0409-0028 4 5
0409-0030 10 4
0409-0032 10 4
0409-0035 5 6
0409-0036 10 4
0409-0038 10 4
0409-0039 10 6
0409-0040 10 6
0409-0043 10 4
0409-0045 10 6
0410-0002 11 5
0410-0003 10
0410-0005 10
0410-0006 10
0410-0010 10
0410-0011 11 5
0410-0012 10
0410-0013 10
0410-0015 10
0410-0017 10
0410-0018 11 5
0414-0010 4
0414-0015 4 6
0414-0017 4 6
0414-0018 4 5
0414-0019 4 6
0414-0020 5 6
0414-0021 4
0415-0001 4 5
0415-0004 4 6
0415-0005 5 6
0415-0011 5 6
0415-0012 4
0415-0013 4
0415-0014 4 5
0415-0016 4 5
0415-0017 5 6
0415-0019 4
0415-0020 4 6
0415-0025 4
AE_HCxJonf-157 4 5
AE_HCXJonf-162 4 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4
AE_HCxJonf-183 4 5
AE0118-237 4 5
AE0118-238 14 4
AE0118-239 5 6
AE0118-240 14 4
AE0118-243 5 6
AE0118-244 14 4
AE0118-245 5 6
AE0118-246 14 6
AE0118-249 4 5
AE0206-159 5 6
AE0206-160 5 6
AE0206-161 5 6
AE0206-162 5 6
AE0206-163 5 6
AE0206-164 5 6
AE0206-165 5
AE0206-167 5 6
AE0206-168 5 6
AE0206-169 5 6
AE0206-170 5 6
AE0210-146 5
AE0210-147 5 9
AE0210-149 5
AE0210-150 5
AE0210-151 5
AE0210-152 5 6
AE0210-153 5
AE0210-154 5
AE0210-157 5 9
AE0210-158 5
AE0210-159 5 9
AE0210-162 5 9
AE0210-163 5
AE0210-164 5
AE0210-165 5
AE0210-166 5
AE0210-168 5
AE0210-169 5
AE0210-170 5
AE0210-171 5
AE0210-172 5
AE0210-173 5 9
AE0210-174 5
AE0213-175 10 5
AE0213-176 5 9
AE0213-177 10 9
AE0213-178 5 9
AE0213-179 10 9
AE0213-180 10 5
AE0213-181 10 9
AE0213-182 10 9
AE0213-183 10 9
AE0213-186 5
AE0213-187 5 9
AE0213-190 10 9
AE0213-193 10 5
AE0213-194 10 5
AE0213-195 10 5
AE0213-196 10 5
AE0213-197 5
AE0213-198 21 5
AE0213-199 5
AE0213-200 5 9
AE0213-201 10 9
AE0213-202 10 9
AE0213-205 10 5
AE0213-206 10 5
AE0251-325 5
AE0251-329 5
AE0251-330 5
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 5
AE0406-239 4
AE0406-254 4 6
AE0406-258 4
AE0406-259 4
AE0406-263 4 5
AE0406-264 4 6
AE0406-266 4 5
AE0406-271 4
AE0406-274 5 6
AE0406-278 5 6
AE0406-281 5 6
AE0406-286 4 6
AE0406-288 4 6
AE0406-289 5 6
AE0406-294 5 6
AE0406-298 5 6
Minneiska 5 6
NJ 303955 21
PRI 612-1 10 5
Arlet 4
Co-op 39 21 5
Pinova 20 5
Scired 10 5
Scifresh 10 20
0409-0025 10 6
0409-0026 5 6
0409-0027 10 4
0409-0031 4 5
0409-0033 10 6
0409-0047 10 6
G-14-050 4 5
G-14-052 4 5
G-14-054 20 5
G-14-055 20 5
G-14-056 20 5
G-14-057 20 5
G-14-059 20 4
G-14-060 5
G-14-061 4 5
G-14-062 20 5
G-14-064 20 5
G-14-065 20 5
G-14-069 20 5
G-14-067 20 5
G-14-068 5
G-14-071 20 5
G-14-073 5
G-14-074 5
G-14-075 20 5
G-14-076 20 5
G-14-077 5
G-14-078 20 4
G-14-080 5
G-09-232 10
G-09-233 10
G-09-234 20 5
G-09-235 10 5
G-09-236 10 5
G-09-237 10 5
G-09-238 10 5
G-09-239 10 20
G-09-240 10 5
G-09-241 10 20
G-09-242 10
G-09-243 20 5
G-09-245 10
G-09-246 10
G-09-258 20 5
G-09-259 10 20
G-09-260 10
G-09-261 20 5
G-09-262 20 5
G-09-263 10 5
G-09-264 10 20
G-09-265 10 5
G-09-266 10
G-09-267 10
G-09-268 10 20
0408-0021 4 5
Wijcik McIntosh 14 5
Beauty of Bath 5
Priam 4 5
Northern Spy 5 6
Co-op 15 4 5
MN 1702 5 8
WA 2 10 5
WA 5 5
Pitmaston Pineapple 4 5
0411-0011 4 5
0411-0017 4
0411-0023 4
AE0250-086 4 5
AE0250-087 4 5
AE0250-089 5
AE0250-090 5
AE0250-092 5
AE0250-093 5
AE0250-094 5
AE0250-095 5
Sonya 10 5
Co-op 38 4
AE0250-096 5
AE0250-327 21 5
Co-op 30 4 5
AE0211-036 10 5
G-07-039 10 21
PRI 14-152 4 5
PRI 47-176 5 6
G-07-041 5 6
BC-8S-27-43 5
AE0250-091 5 6
AE0250-097 4 5
AE0250-325 4 5
AE0250-326 4 5
AE0250-329 5 6
AE0250-333 4 5
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 4 5
AE0250-338 4 5
AE0250-341 4 5
AE0211-038 5 9
AE0211-043 10 5
AE0211-045 10 9
AE0211-051 10 5
G-07-010 10
G-07-014 10
G-07-015 10 6
G-07-019 10 6
G-07-020 11 6
G-07-024 10 11
G-07-032 10
G-07-033 10 11
G-07-035 10 11
G-07-044 10 11
AE0211-053 5
AE0211-054 5 6
AE0250-088 4 5
AE0250-324 4 6
AE0250-328 4 5
AE0250-331 4 5
AE0250-332 5 6
AE0250-337 6
AE0250-339 5 6
Minnewashta 5 6
Autumn Crisp 4 5
G-14-066 20 5
Lu1-11-010 10 5
Lu1-11-013 10 5
Lu1-11-016 5
Lu1-11-017 10 5
Lu1-11-018 10 5
NJ 90 10 5
Lord Lambourne 5
Antonovka GH 6 9
Grimes Golden 2 4
Kidds Orange Red 10 5
Malus baccata Hansen #2 24 77
Malus baccata Jackii 24
Summerred 78 84
William's Pride 5 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-7Apple-RosBREED-3.9K-201989.719.74
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384
GDsnp01614BAABBBABBA--BBABB-BBBBBABAABBBBB----BBBABBB------BAB-ABAB-BBBBBBAB--BBBAB--BBABA--A
RosBREEDSNP_SNP_CA_8908991_Lg8_01614_MAF40_223797_exon1--BBBBAAABBBBBBBA-ABAAAB-ABABA--BB-BBAB---BABAB---BABBB--BB----BA---BAAB-BABBBBAABB
RosBREEDSNP_SNP_GA_8916202_Lg8_01614_MAF30_1632037_exon3--BBBBBBABBBB--BB-BB-ABB-ABAABABB-BBBAA-BBBAB----BBBBBBBBB-BAA------BABB-BAB--BBABB
RosBREEDSNP_SNP_GT_8895885_Lg8_01614_MAF20_259445_exon1--BBBABBBBBBBBBBBBABBBBB-BBBBBBBBBBBBBB-BBB------BBBBBBBBB-ABBBBBBBBBABAB--A--BB--B
RosBREEDSNP_SNP_GT_8898659_Lg8_01614_MAF40_9871_exon1BBBBAAABAAABABBBA-AAABABAAAABA------AAB-ABB--ABABA--ABBBA-BAAAAABABAAAAB---AABAAABB
RosBREEDSNP_SNP_GT_8904555_Lg8_01614_MAF50_MDP0000243374_exon4BBBBAAABAAABBBB---AAABA-AA--AB-----BAAB-ABA--ABABB--BBBBA-BAAA-ABABABAAA---ABA--ABA
RosBREEDSNP_SNP_TC_8912899_Lg8_01614_MAF30_468282_exon1--AAAAAABAAAA--AA-AB-BAA-AABBABA--AA--B-AAA------AAAA----A-AB--AA---BABA-ABB--AABAA
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:4761039..4794602. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation