Mdo-HB-08-45

Haplotype Block Overview
Name Mdo-HB-08-45
Species Malus x domestica
Stock Haplotype [view all 432]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5 8
Rome Beauty Law 5
Jonafree 5
Redfree 5 6
Spartan 5
Wagener 4 5
Worcester Pearmain 5
Tsugaru 5
Golden Delicious 4 5
Fuji 5
Empire 4 5
Gala 4 5
Honeycrisp 6
Elstar 4 5
Marshall McIntosh 4 5
Cripps Pink 5
Granny Smith 5
Jonathan 5
Ralls Janet 5
Delicious 5
Discovery 5
Prima 5
821 5
Fiesta 4 8
Ingrid Marie 5 8
Idared 4 5
Esopus Spitzenburg 5
Braeburn 5
Sansa 4 5
Lodi 5 6
James Grieve 5 8
Cripps Red 5
Burgundy 5
Akane 5
Ambrosia 5
Aurora Golden Gala 5
Beacon 5
Ben Davis 5
Cameo 4 5
Chinook 4 5
Clivia 5
Co-op 17 5
Co-op 18 5
Dayton 5 6
Delblush 5
Delcorf 5
Delorgue 5
Dolgo 14 4
Geheimrat Dr. Oldenburg 5
Duchess of Oldenburg 5 6
Early Cortland 4 5
Empress 4 5
F2 26829-2-2 5
Fantazja 4 6
Fireside 5 6
Fortune 5
Frostbite 5 6
Ginger Gold 5
GMAL 4327 5 8
GMAL 4328 5 8
GMAL 4329 5 8
GMAL 4332 5 6
Goodland 5 6
Haralson 5 6
Honeygold 5 6
Hudson 4 5
Jersey Black 5
Jonamac 4 5
Keepsake 5 6
Kerr 4 6
Lady Williams 5
Liberty 5
Linda 4 6
Liveland Raspberry 14 5
Longfield 14 5
Macoun 4 5
Malinda 5
Mantet 11 4
Melba 5
Melrose 5
MN 1627 4 6
MN 1628 5 6
MN 1691 5
MN 1706 5
MN 1708 6
MN 1760 5
MN 1764 5
MN 1789 4 5
MN 1802 5 6
MN 1836 4 6
MN 1837 4 5
MN 1839 5 6
MN 1888 5 6
MN 1899 5
MN 1940 5 6
MN 2016 5
AA-44 5
Monroe 5
Montgomery 5
Nicola 4 5
NJ 31 5
NJ 53 5
Oriole 5
PRI 14-126 4 5
PRI 14-510 4 5
PRI 1661-2 5
PRI 54-12 5 6
PRI 855-102 5
Primula 4 5
Raritan 5
Regent 5
Russian Seedling 5
Sawa 4
Sciros 5
Sharon 4 5
Silken 5
Wildung 5
Splendour 5
State Fair 4 6
NJ 55 4 5
Co-op 29 5
Sunrise 5
Sweet Sixteen 5
Topaz 5
Vista Bella 5
Wealthy 5 6
Winesap 5
Winter Banana 5
Yellow Newtown 5
Yellow Transparent 6
0407-0001 4 5
0407-0005 5
0407-0006 5
0407-0007 4 5
0407-0008 5
0408-0003 5
0408-0004 5
0408-0005 5
0408-0007 5
0408-0008 5
0408-0010 5
0408-0011 5
0408-0014 5
0408-0015 5
0409-0022 5 6
0409-0024 5 6
0409-0028 5 6
0409-0030 5 6
0409-0032 5 6
0409-0035 5 6
0409-0036 5 6
0409-0038 5 6
0409-0039 5 6
0409-0040 5 6
0409-0043 5 6
0409-0045 5 6
0410-0002 5
0410-0003 5
0410-0005 5
0410-0006 5
0410-0010 5
0410-0011 5
0410-0012 5
0410-0013 5
0410-0015 5
0410-0017 5
0410-0018 5
0414-0010 4 6
0414-0015 5 6
0414-0017 4 6
0414-0018 5 6
0414-0019 5 6
0414-0020 5 6
0414-0021 5 6
0415-0001 5 6
0415-0004 5 6
0415-0005 5 6
0415-0011 5 6
0415-0012 5 6
0415-0013 5 6
0415-0014 6 8
0415-0016 5 6
0415-0017 5 6
0415-0019 5 6
0415-0020 5 6
0415-0025 5 6
AE_HCxJonf-145 5 6
AE_HCXJonf-148 5 6
AE_HCxJonf-157 5 6
AE_HCXJonf-162 5 6
AE_HCXJonf-168 5 6
AE_HCxJonf-175 5 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 5 6
AE0118-237 5 6
AE0118-238 5 6
AE0118-239 6
AE0118-240 5 6
AE0118-243 5 6
AE0118-244 5 6
AE0118-245 5 6
AE0118-246 5 6
AE0118-249 5 6
AE0206-159 4 6
AE0206-160 4 6
AE0206-161 5
AE0206-162 4 5
AE0206-163 5 6
AE0206-164 4 6
AE0206-165 5 6
AE0206-167 4 6
AE0206-168 4 6
AE0206-169 4 6
AE0206-170 4 5
AE0210-146 5 8
AE0210-147 5
AE0210-149 5
AE0210-150 5
AE0210-151 5 8
AE0210-152 5 6
AE0210-153 5 8
AE0210-154 5
AE0210-157 5
AE0210-158 5
AE0210-159 5
AE0210-162 5 8
AE0210-163 5
AE0210-164 5 8
AE0210-165 5 8
AE0210-166 5
AE0210-168 5
AE0210-169 5
AE0210-170 5 8
AE0210-171 5 8
AE0210-172 5 8
AE0210-173 5
AE0210-174 5 8
AE0213-175 5 6
AE0213-176 5
AE0213-177 5 6
AE0213-178 5 6
AE0213-179 5 6
AE0213-180 5
AE0213-181 5 6
AE0213-182 5 6
AE0213-183 5
AE0213-186 5 6
AE0213-187 5
AE0213-190 5
AE0213-193 5
AE0213-194 5
AE0213-195 5 6
AE0213-196 5
AE0213-197 5
AE0213-198 5
AE0213-199 5 6
AE0213-200 5 6
AE0213-201 5 6
AE0213-202 5
AE0213-205 5 6
AE0213-206 5
AE0251-323 5
AE0251-325 5
AE0251-327 4 5
AE0251-329 4 5
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 4 5
AE0406-239 5 6
AE0406-254 5 6
AE0406-258 5 6
AE0406-259 5 6
AE0406-263 5 6
AE0406-264 5 6
AE0406-266 5 6
AE0406-271 6
AE0406-274 5 6
AE0406-278 5 6
AE0406-281 5 6
AE0406-286 5 6
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 5 6
AE0406-298 5 6
Minneiska 6
NJ 303955 4
PRI 612-1 5
Arlet 4 5
Co-op 39 5 6
Pinova 4 5
Scired 5
Scifresh 5
0409-0025 5 6
0409-0026 5 6
0409-0027 5 6
0409-0031 5 6
0409-0033 5 6
0409-0047 5 6
G-14-050 5
G-14-052 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4 5
G-14-059 5
G-14-060 5
G-14-061 4 5
G-14-062 5
G-14-064 4 5
G-14-065 5
G-14-069 4 5
G-14-067 5
G-14-068 4 5
G-14-071 5
G-14-073 4 5
G-14-074 4 5
G-14-075 5
G-14-076 5
G-14-077 5
G-14-078 5
G-14-080 4 5
G-09-232 5
G-09-233 5
G-09-234 5
G-09-235 5
G-09-236 5
G-09-237 5
G-09-238 5
G-09-239 5
G-09-240 5
G-09-241 5
G-09-242 5
G-09-243 5
G-09-245 5
G-09-246 5
G-09-258 5
G-09-259 5
G-09-260 5
G-09-261 5
G-09-262 5
G-09-263 5
G-09-264 5
G-09-265 5
G-09-266 5
G-09-267 5
G-09-268 5
0408-0021 5
Wijcik McIntosh 4 5
Beauty of Bath 5
Priam 4 5
Northern Spy 5
Co-op 15 5
MN 1702 5 6
WA 2 4 5
WA 5 5
Pitmaston Pineapple 5
0411-0011 5
0411-0017 4 5
0411-0023 5
AE0250-086 5
AE0250-087 4 5
AE0250-089 4 5
AE0250-090 5
AE0250-092 5
AE0250-093 4 5
AE0250-094 5
AE0250-095 5
Sonya 4 5
Co-op 38 4 5
AE0250-096 5 6
AE0250-327 5
Co-op 30 5
Jonagrimes 2 5
AE0211-036 5 6
G-07-039 4 5
PRI 14-152 4 5
PRI 47-176 5
G-07-041 5
BC-8S-27-43 4 5
AE0250-091 5 6
AE0250-097 6 8
AE0250-325 6 8
AE0250-326 6 8
AE0250-329 6 8
AE0250-333 5 6
AE0250-334 6 8
AE0250-335 5 6
AE0250-336 6 8
AE0250-338 5 6
AE0250-341 6 8
AE0211-038 5 8
AE0211-043 5
AE0211-045 5 8
AE0211-051 5 8
G-07-010 5
G-07-014 4 5
G-07-015 4 5
G-07-019 4 5
G-07-020 5
G-07-024 5
G-07-032 4 5
G-07-033 4 5
G-07-034 4 5
G-07-035 5
G-07-044 5
AE0211-053 5
AE0211-054 5 6
AE0250-088 6
AE0250-324 6
AE0250-328 5 6
AE0250-331 6
AE0250-332 5 6
AE0250-337 6
AE0250-339 5 6
Minnewashta 5 6
Autumn Crisp 5
G-14-066 5
Lu1-11-010 5
Lu1-11-013 5
Lu1-11-016 5
Lu1-11-017 5
Lu1-11-018 5
NJ 90 4 5
Lord Lambourne 5
Antonovka GH 5
Grimes Golden 2 4
Kidds Orange Red 5 8
Malus baccata Hansen #2 5 6
Malus baccata Jackii 4
Summerred 4
William's Pride 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-45Apple-RosBREED-3.9K-2019859.3263.7
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819
GDsnp00246nullAABBBB-ABB-BBA---
RosBREEDSNP_SNP_CT_35058728_Lg8_00299_MAF20_1651802_exon1BBBBABAB---BB----A
RosBREEDSNP_SNP_GA_35118186_Lg8_00299_MAF10_MDP0000215722_exon1--BBB-ABBAB-A--ABB
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:30408377..30875531. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation