Mdo-HB-08-42

Haplotype Block Overview
Name Mdo-HB-08-42
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 4
Rome Beauty Law 10 8
Jonafree 17 8
Redfree 4 8
Spartan 10
Wagener 10 12
Worcester Pearmain 10
Tsugaru 17 5
Golden Delicious 4 5
Fuji 10 8
Empire 10 5
Gala 10 4
Honeycrisp 4
Elstar 4
Marshall McIntosh 10 5
Cripps Pink 10 5
Granny Smith 10 8
Jonathan 17 8
Ralls Janet 2 8
Delicious 10
Discovery 10 6
Prima 10 8
821 12
Fiesta 12 4
Ingrid Marie 4
Idared 12 8
Esopus Spitzenburg 8 9
Braeburn 10
Sansa 17 4
Lodi 10 8
James Grieve 17 4
Cripps Red 10 5
Burgundy 10 8
Akane 10 17
Ambrosia 10 5
Aurora Golden Gala 10 5
Beacon 10 9
Ben Davis 10 5 8
Cameo 10 4
Chinook 10 4
Clivia 10 8
Co-op 17 10 12
Co-op 18 47 5
Dayton 10 12 4
Delblush 5 8
Delorgue 17 6
Dolgo 11 12
Geheimrat Dr. Oldenburg 6 8
Duchess of Oldenburg 4 6
Early Cortland 10 5
Empress 10 5
F2 26829-2-2 10 12
Fantazja 4 5
Fireside 17 4
Fortune 10 8
Frostbite 4 8
Ginger Gold 10 5
GMAL 4327 4 8
GMAL 4328 17 4
GMAL 4329 6 8
GMAL 4332 4 8
Goodland 10 4
Haralson 4 9
Honeygold 5 9
Hudson 5 9
Jersey Black 10
Jonamac 5 8
Keepsake 4 9
Kerr 12 4
Lady Williams 10 6
Liberty 10 12
Linda 4 8
Liveland Raspberry 11 5
Longfield 47 5
Macoun 10 5
Malinda 10 9
Melba 10 11
Melrose 10 17
MN 1627 4
MN 1628 4 9
MN 1691 17 4
MN 1706 41 6
MN 1708 4
MN 1760 17 9
MN 1764 4 8
MN 1789 17 4
MN 1802 4 9
MN 1836 4 5
MN 1837 4
MN 1839 4 9
MN 1888 4
MN 1899 8 9
MN 1940 10 17
MN 2016 17 8
AA-44 10 8
Monroe 8
Montgomery 10
Nicola 10 4
NJ 31 8 9
NJ 53 10 8
Oriole 17 5
PRI 14-126 12 4
PRI 14-510 10
PRI 1661-2 10 12
PRI 855-102 17
Primula 11 4
Raritan 44 5
Regent 10 9
Russian Seedling 27 5
Sawa 4 5
Sciros 10 4
Sharon 10 5
Silken 5
Wildung 10 17
Splendour 10 5
State Fair 4 5
NJ 55 5
Co-op 29 10 5
Sunrise 10 5
Sweet Sixteen 8 9
Topaz 17
Vista Bella 10
Wealthy 17 4
Winesap 10 8
Winter Banana 10 4
Yellow Newtown 46 6
Yellow Transparent 8
0407-0001 4 5
0407-0005 5 8
0407-0006 10 8
0407-0007 4 5
0407-0008 10 8
0408-0003 10
0408-0004 10 5
0408-0005 10
0408-0007 10 5
0408-0008 10
0408-0010 10 5
0408-0011 10 5
0408-0014 10 5
0408-0015 10
0409-0022 10 4
0409-0024 4 5
0409-0028 4 5
0409-0030 10 4
0409-0032 10 4
0409-0035 10 4
0409-0036 10 4
0409-0038 10 4
0409-0039 10 4
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 5 8
0410-0003 10 5
0410-0005 5 8
0410-0006 10
0410-0010 10 8
0410-0011 5 8
0410-0012 10
0410-0013 5 8
0410-0015 10
0410-0017 10 5
0410-0018 10 8
0414-0010 4
0414-0015 4 8
0414-0017 4
0414-0018 10 4
0414-0019 4 8
0414-0020 10 4
0414-0021 4 8
0415-0001 10 4
0415-0004 10 4
0415-0005 10 4
0415-0011 10 4
0415-0012 10 4
0415-0013 10 4
0415-0014 4
0415-0016 10 4
0415-0017 10 4
0415-0019 10 4
0415-0020 10 4
0415-0025 10 4
AE_HCxJonf-145 17 4
AE_HCXJonf-148 17 4
AE_HCxJonf-157 4 8
AE_HCXJonf-162 4 8
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4 8
AE_HCxJonf-183 4 8
AE_HCxJonf-185 4 8
AE0118-237 10 4
AE0118-238 4 9
AE0118-239 4
AE0118-240 4 9
AE0118-243 10 4
AE0118-244 10 4
AE0118-245 4 9
AE0118-246 10 4
AE0118-249 4 9
AE0206-159 4
AE0206-160 4
AE0206-161 10 17
AE0206-162 17 4
AE0206-163 10 4
AE0206-164 4
AE0206-165 10 4
AE0206-167 4
AE0206-168 4
AE0206-169 4
AE0206-170 17 4
AE0210-146 10 6
AE0210-147 5 8
AE0210-149 5 8
AE0210-150 10 8
AE0210-151 10 6
AE0210-152 17 5
AE0210-153 5 6
AE0210-154 10 8
AE0210-157 10 8
AE0210-158 5 6
AE0210-159 5 8
AE0210-162 5 6
AE0210-163 10 8
AE0210-164 5 6
AE0210-165 5 6
AE0210-166 5 6
AE0210-168 10 8
AE0210-169 10 8
AE0210-170 10 6
AE0210-171 10 6
AE0210-172 10 6
AE0210-173 5 8
AE0210-174 5 6
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 4 5
AE0213-179 10 4
AE0213-180 10 8
AE0213-181 4 5
AE0213-182 10 4
AE0213-183 10 8
AE0213-186 10 4
AE0213-187 5 8
AE0213-190 5 8
AE0213-193 5 8
AE0213-194 5 8
AE0213-195 10 4
AE0213-196 10 8
AE0213-197 10 8
AE0213-198 5
AE0213-199 10 4
AE0213-200 4 5
AE0213-201 5 8
AE0213-202 10 8
AE0213-205 10 4
AE0213-206 10 8
AE0251-323 10 9
AE0251-325 10 9
AE0251-327 4 8
AE0251-329 4 9
AE0251-330 4 9
AE0251-331 4 9
AE0251-342 4 8
AE0251-343 4 8
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 5
AE0406-264 4 5
AE0406-266 4 5
AE0406-271 4 9
AE0406-274 4 5
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 5
AE0406-294 4 5
AE0406-298 4 5
Minneiska 4
NJ 303955 5
PRI 612-1 10 12
Arlet 4 8
Co-op 39 27 48
Pinova 4 8
Scired 10
Scifresh 10
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 10 4
0409-0033 10 4
0409-0047 4 5
G-14-050 5 8
G-14-052 5 8
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4 8
G-14-059 5 8
G-14-060 5 8
G-14-061 4 8
G-14-062 5 8
G-14-064 4 8
G-14-065 5 8
G-14-069 4 8
G-14-067 8
G-14-068 4 8
G-14-071 5 8
G-14-073 4 8
G-14-074 4 5
G-14-075 5 8
G-14-076 5 8
G-14-077 8
G-14-078 8
G-14-080 4 8
G-09-232 10 5
G-09-233 10
G-09-234 10 5
G-09-235 10 5
G-09-236 10 5
G-09-237 10 5
G-09-238 10
G-09-239 10 5
G-09-240 10 5
G-09-241 10 5
G-09-242 10
G-09-243 10 5
G-09-245 10
G-09-246 10
G-09-258 10 5
G-09-259 10
G-09-260 10 5
G-09-261 10 5
G-09-262 10 5
G-09-263 10
G-09-264 10 5
G-09-265 10 5
G-09-266 10
G-09-267 10
G-09-268 10
0408-0021 10
Wijcik McIntosh 27 6
Beauty of Bath 46 6
Priam 4 8
Northern Spy 9
Co-op 15 12 8
MN 1702 4 8
WA 2 4 5
WA 5 12 5
Pitmaston Pineapple 10 9
0411-0011 10 8
0411-0017 10 4
0411-0023 10 8
AE0250-086 10 9
AE0250-087 4 9
AE0250-089 4 9
AE0250-090 10 8
AE0250-092 10 9
AE0250-093 4 8
AE0250-094 10 9
AE0250-095 10 8
Sonya 10 4
Co-op 38 12 4
AE0250-096 17 4
AE0250-327 12 4
Co-op 30 10
Jonagrimes 4 6
AE0211-036 5 8
G-07-039 17 5
G-07-041 10 17
BC-8S-27-43 10 4
AE0250-091 4 8
AE0250-097 4
AE0250-325 4
AE0250-326 4 8
AE0250-329 4
AE0250-333 4 8
AE0250-334 4
AE0250-335 4
AE0250-336 4
AE0250-338 4 8
AE0250-341 4
AE0211-038 10 4
AE0211-043 10 17
AE0211-045 10 4
AE0211-051 4 5
G-07-010 10 17
G-07-014 10 4
G-07-015 10 4
G-07-019 10 4
G-07-020 17 8
G-07-024 10 4
G-07-032 4 8
G-07-033 4 8
G-07-034 10 4
G-07-035 17 8
G-07-044 17 8
AE0211-053 10 17
AE0211-054 10 4
AE0250-324 4
AE0250-328 17 4
AE0250-331 4
AE0250-332 17 4
AE0250-337 4
AE0250-339 17 4
Minnewashta 17 4
Autumn Crisp 5 8
G-14-066 8
Lu1-11-010 10 5
Lu1-11-013 5 8
Lu1-11-016 5 8
Lu1-11-017 10
Lu1-11-018 10
NJ 90 10
Lord Lambourne 10 17
Antonovka GH 5 54
Grimes Golden 2 4
Kidds Orange Red 10 4
Malus baccata Hansen #2 12 4
Malus baccata Jackii 12
Summerred 10 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-42Apple-RosBREED-3.9K-2019854.5154.82
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657
GDsnp01182--ABB-BAB-BBB--BBBBBBABA-BABBA-----BBBBABBBABBABBABABBAB
RosBREEDSNP_SNP_CT_32814468_Lg8_01182_MAF50_170823_exon1ABBBA-BAABA--AAB--BABABB-B----BAB--BABAABAAABBBABAABA---
RosBREEDSNP_SNP_GT_32828726_Lg8_01182_MAF40_492090_exon1--BBBBBBA-B--ABAB-BA-----ABA--B----AA--B--AAAAB---BABB--
RosBREEDSNP_SNP_TC_32812193_Lg8_01182_MAF30_MDP0000647918_exon1AAAAAABAABA--AAAAA----BAAAAABAB--BAAA--AAABABBAAAAAABB--
RosBREEDSNP_SNP_TG_32856152_Lg8_01182_MAF20_528574_exon1--AAAAAAA-BABABBAAAAAAAAAAAAAAA------BAB--AAABBABA-AAA--
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:28287029..28329144. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation