Mdo-HB-08-40

Haplotype Block Overview
Name Mdo-HB-08-40
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 7
Rome Beauty Law 6 7
Jonafree 5 6
Redfree 11 4
Spartan 10 5
Wagener 5 7
Worcester Pearmain 2 7
Tsugaru 5
Golden Delicious 4 5
Fuji 5 6
Empire 5
Gala 4 5
Honeycrisp 5
Elstar 4
Marshall McIntosh 10 5
Cripps Pink 10 5
Granny Smith 10 6
Jonathan 5 6
Ralls Janet 6 8
Delicious 5 7
Discovery 10 2
Prima 11 6
821 5 7
Fiesta 10 7
Ingrid Marie 10 4
Idared 6 7
Esopus Spitzenburg 6 7
Braeburn 10 7
Sansa 4 5
Lodi 5 7
James Grieve 10 7
Cripps Red 10 5
Burgundy 5 6
Akane 5 7
Ambrosia 5
Aurora Golden Gala 5
Beacon 8
Ben Davis 10 11 5 6
Cameo 4 5
Chinook 4 7
Clivia 7
Co-op 17 7
Co-op 18 5 6
Dayton 11 5 7
Delblush 5 6
Delcorf 5
Delorgue 5
Dolgo 5 7
Geheimrat Dr. Oldenburg 10 7
Duchess of Oldenburg 5
Early Cortland 11 5
Empress 5
F2 26829-2-2 11 7
Fantazja 5
Fireside 5
Fortune 10 6
Frostbite 5 6
Ginger Gold 5
GMAL 4327 17 7
GMAL 4328 4 7
GMAL 4329 4 7
GMAL 4332 17 7
Goodland 10 5
Haralson 10 5
Honeygold 10 5
Hudson 5
Jersey Black 5
Keepsake 5 7
Kerr 5
Lady Williams 10 5
Liberty 5 7
Linda 5 6
Longfield 10 7
Macoun 5
Malinda 10 7
Melba 10
Melrose 5 7
MN 1627 4 5
MN 1628 5 7
MN 1691 5
MN 1706 7
MN 1708 5
MN 1760 10 5
MN 1764 5 6
MN 1789 4 5
MN 1802 5 7
MN 1836 5
MN 1837 4 5
MN 1839 10 5
MN 1888 4 5
MN 1899 10 6
MN 1940 5
MN 2016 5 6
AA-44 10 5
Monroe 6
Montgomery 10 5
Nicola 4 7
NJ 31 6
NJ 53 5 7
Oriole 10 5
PRI 14-126 4 7
PRI 14-510 11 4
PRI 1661-2 10 7
PRI 54-12 5 7
PRI 855-102 5
Primula 10 4
Raritan 10 7
Regent 10
Russian Seedling 17
Sawa 4 5
Sciros 4 7
Sharon 10 5
Silken 5
Wildung 10 5
Splendour 5 7
State Fair 5
NJ 55 5
Co-op 29 5
Sunrise 5 7
Sweet Sixteen 5 6
Topaz 7
Vista Bella 10 5
Wealthy 5
Winesap 6 7
Winter Banana 10 5
Yellow Newtown 10 7
Yellow Transparent 6 7
0407-0001 4 5
0407-0005 5 6
0407-0006 5 6
0407-0007 4 5
0407-0008 5 6
0408-0003 10 5
0408-0004 10 5
0408-0005 5
0408-0007 5
0408-0008 5
0408-0010 10 5
0408-0011 10 5
0408-0014 10 5
0408-0015 5
0409-0022 5
0409-0024 5
0409-0028 5
0409-0030 5
0409-0032 5
0409-0035 5
0409-0036 5
0409-0038 5
0409-0039 5
0409-0040 5
0409-0043 5
0409-0045 5
0410-0002 5 6
0410-0003 10 5
0410-0005 5 6
0410-0006 10 5
0410-0010 5 6
0410-0011 5 6
0410-0012 10 5
0410-0013 5 6
0410-0015 10 5
0410-0017 10 5
0410-0018 5 6
0414-0010 4 5
0414-0015 5 6
0414-0017 4 5
0414-0018 10 5
0414-0019 5 6
0414-0020 5
0414-0021 5 6
0415-0001 5
0415-0004 10 5
0415-0005 5
0415-0011 10 5
0415-0012 5
0415-0013 10 5
0415-0014 10 5
0415-0016 5
0415-0017 10 5
0415-0019 5
0415-0020 10 5
0415-0025 5
AE_HCxJonf-145 5
AE_HCXJonf-148 5
AE_HCxJonf-157 5 6
AE_HCXJonf-162 5 6
AE_HCXJonf-168 5
AE_HCxJonf-175 5 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 5 6
AE0118-237 10 5
AE0118-238 10 5
AE0118-239 5
AE0118-240 10 5
AE0118-243 10 5
AE0118-244 10 5
AE0118-245 10 5
AE0118-246 10 5
AE0118-249 10 5
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 5 7
AE0206-162 4 5
AE0206-163 5 7
AE0206-164 4 5
AE0206-165 5 7
AE0206-167 4 5
AE0206-168 4 5
AE0206-169 4 5
AE0206-170 4 5
AE0210-146 4 7
AE0210-147 5 7
AE0210-149 5 7
AE0210-150 7
AE0210-151 4 7
AE0210-152 5
AE0210-153 4 5
AE0210-154 7
AE0210-157 7
AE0210-158 4 5
AE0210-159 5 7
AE0210-162 4 5
AE0210-163 7
AE0210-164 4 5
AE0210-165 4 5
AE0210-166 4 5
AE0210-168 7
AE0210-169 7
AE0210-170 4 7
AE0210-171 4 7
AE0210-172 4 7
AE0210-173 5 7
AE0210-174 4 5
AE0213-175 17 5
AE0213-176 17 5
AE0213-177 17 5
AE0213-178 17 5
AE0213-179 17 5
AE0213-180 5 7
AE0213-181 17 5
AE0213-182 17 5
AE0213-183 5 7
AE0213-186 17 5
AE0213-187 5 7
AE0213-190 5 7
AE0213-193 5 7
AE0213-194 5 7
AE0213-195 17 5
AE0213-196 5 7
AE0213-197 5 7
AE0213-198 5
AE0213-199 17 5
AE0213-200 17 5
AE0213-201 5 7
AE0213-202 5 7
AE0213-205 17 5
AE0213-206 5 7
AE0251-323 5 7
AE0251-325 5 7
AE0251-327 4 6
AE0251-329 5 7
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 4 6
AE0251-343 4 6
AE0406-239 5
AE0406-254 5
AE0406-258 5
AE0406-259 5
AE0406-263 5
AE0406-264 5
AE0406-266 5
AE0406-271 10 5
AE0406-274 5
AE0406-278 5
AE0406-281 5
AE0406-286 5
AE0406-288 5
AE0406-289 5
AE0406-294 5
AE0406-298 5
Minneiska 5
NJ 303955 5
PRI 612-1 5 7
Arlet 4 6
Co-op 39 5
Pinova 4 7
Scired 5 7
Scifresh 10 5
0409-0025 5
0409-0026 5
0409-0027 5
0409-0031 5
0409-0033 5
0409-0047 5
G-14-050 5 7
G-14-052 5 7
G-14-054 4 5
G-14-055 4 5
G-14-056 5 7
G-14-057 4 6
G-14-059 6 7
G-14-060 5 7
G-14-061 4 6
G-14-062 5 7
G-14-064 4 6
G-14-065 5 7
G-14-069 4 6
G-14-067 6 7
G-14-068 4 6
G-14-071 5 7
G-14-073 4 6
G-14-074 4 5
G-14-075 5 7
G-14-076 5 7
G-14-077 6 7
G-14-078 6 7
G-14-080 4 6
G-09-232 10 5
G-09-233 10 5
G-09-234 10 5
G-09-235 10 5
G-09-236 10 5
G-09-237 10 5
G-09-238 5 7
G-09-239 10 5
G-09-240 10 5
G-09-241 5 7
G-09-242 5 7
G-09-243 10 5
G-09-245 10 5
G-09-246 5 7
G-09-258 10 5
G-09-259 10 5
G-09-260 5 7
G-09-261 5 7
G-09-262 5 7
G-09-263 10 5
G-09-264 10 5
G-09-265 10 5
G-09-266 5 7
G-09-267 10 5
G-09-268 5 7
0408-0021 10 5
Wijcik McIntosh 29 7
Beauty of Bath 10 6
Priam 4 6
Northern Spy 5 7
Co-op 15 6 7
MN 1702 5 6
WA 2 4 5
WA 5 5 7
Pitmaston Pineapple 5 7
0411-0011 10 6
0411-0017 4 5
0411-0023 10 6
AE0250-086 5 7
AE0250-087 4 5
AE0250-089 4 5
AE0250-090 6 7
AE0250-092 5 7
AE0250-093 4 6
AE0250-094 5 7
AE0250-095 6 7
Sonya 4 7
Co-op 38 5 7
AE0250-096 5 7
AE0250-327 5 7
Co-op 30 10 5
Jonagrimes 4 5
AE0211-036 5 7
G-07-039 5
PRI 14-152 11 4
PRI 47-176 5 7
G-07-041 5
BC-8S-27-43 4 7
AE0250-091 5 7
AE0250-097 17 5
AE0250-325 17 5
AE0250-326 5 7
AE0250-329 17 5
AE0250-333 5 7
AE0250-334 17 5
AE0250-335 17 5
AE0250-336 17 5
AE0250-338 5 7
AE0250-341 17 5
AE0211-038 4 5
AE0211-043 5 7
AE0211-045 4 5
AE0211-051 4 5
G-07-010 10 4
G-07-014 10 4
G-07-015 10 4
G-07-019 10 4
G-07-020 5 6
G-07-024 10 4
G-07-032 4 6
G-07-033 4 6
G-07-034 10 4
G-07-035 5 6
G-07-044 5 6
AE0211-053 5
AE0211-054 5
AE0250-088 5
AE0250-324 5
AE0250-328 5
AE0250-331 5
AE0250-332 5
AE0250-337 5
AE0250-339 5
Minnewashta 5
Autumn Crisp 5 6
G-14-066 6 7
Lu1-11-010 5
Lu1-11-013 5 6
Lu1-11-016 5 6
Lu1-11-017 10 5
Lu1-11-018 10 5
NJ 90 10 5
Lord Lambourne 7
Antonovka GH 5 7
Grimes Golden 2 4
Kidds Orange Red 10 5
Malus baccata Hansen #2 5
Malus baccata Jackii 5
Summerred 10 4
William's Pride 5 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-40Apple-RosBREED-3.9K-2019850.550.5
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930
GDsnp00293ABBABAABAAAA---B-AB---BAABAAA
RosBREEDSNP_SNP_CT_31145617_Lg8_01576_MAF50_410454_exon1BBBBBAABAB-B-B-AA--BABBAA--B-
RosBREEDSNP_SNP_TG_30479542_Lg8_00342_MAF30_570403_exon2AAAABAABABAB-AAAA----B--BBAAA
RosBREEDSNP_SNP_TG_31137343_Lg8_01576_MAF20_1645315_exon2--AAAA--BAA-AA-AA--AAAABB--BB
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:26961365..27493482. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation