Mdo-HB-08-39

Haplotype Block Overview
Name Mdo-HB-08-39
Species Malus x domestica
Stock Haplotype [view all 424]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 7 9
Rome Beauty Law 4 7
Jonafree 4 5
Redfree 4
Spartan 5 9
Wagener 13 5
Worcester Pearmain 5 9
Tsugaru 5
Golden Delicious 4 5
Fuji 4 5
Empire 5
Gala 4 5
Honeycrisp 4
Elstar 4
Marshall McIntosh 5 9
Cripps Pink 5 9
Granny Smith 4 9
Jonathan 4 5
Ralls Janet 4 8
Delicious 5 7
Discovery 5
Prima 4
821 5
Fiesta 9
Ingrid Marie 4 9
Idared 13 4
Esopus Spitzenburg 4 5
Braeburn 7 9
Sansa 4 5
Lodi 4 5
James Grieve 7 9
Cripps Red 5 9
Burgundy 4 5
Akane 5 9
Ambrosia 5
Aurora Golden Gala 5
Beacon 4 9
Ben Davis 4 5 9
Cameo 4 5
Chinook 4 7
Clivia 4 7
Co-op 17 5 7
Co-op 18 4 5
Dayton 4 5
Delblush 4 5
Delorgue 5
Dolgo 6
Geheimrat Dr. Oldenburg 4 9
Duchess of Oldenburg 4 5
Early Cortland 4 5
Empress 5
F2 26829-2-2 4 5
Fantazja 4 5
Fireside 5 7
Fortune 4 9
Frostbite 4
Ginger Gold 5
GMAL 4327 4
GMAL 4328 13 7
GMAL 4329 13 4
GMAL 4332 4
Goodland 4 9
Haralson 4 9
Honeygold 5 9
Hudson 5
Jersey Black 5
Jonamac 5
Keepsake 4 5
Kerr 4 6
Lady Williams 5 9
Liberty 5
Linda 4
Liveland Raspberry 4 9
Longfield 22 28
Macoun 5
Malinda 7 9
Melba 4 9
Melrose 5 7
MN 1628 4 5
MN 1691 4 5
MN 1706 5
MN 1708 4
MN 1760 5 9
MN 1764 4
MN 1789 4 5
MN 1802 4 5
MN 1836 4 5
MN 1837 4
MN 1839 4 9
MN 1888 4
MN 1899 4 9
MN 1940 5
MN 2016 4 5
AA-44 5 9
Monroe 4
Montgomery 5
Nicola 4 7
NJ 31 4
NJ 53 4 5
Oriole 5 9
PRI 14-126 4 5
PRI 14-510 4
PRI 1661-2 5 9
PRI 54-12 5
PRI 855-102 5
Primula 4
Raritan 13 26
Regent 9
Russian Seedling 13 4
Sawa 4 5
Sciros 4 7
Sharon 5 9
Silken 5
Wildung 5 9
Splendour 5 7
State Fair 4 5
NJ 55 5
Co-op 29 5 7
Sunrise 5 7
Sweet Sixteen 4 5
Topaz 7
Vanda 15 7
Vista Bella 5 9
Wealthy 4 5
Winesap 4 7
Winter Banana 27 28
Yellow Newtown 26 29
Yellow Transparent 4
0407-0001 4 5
0407-0005 4 5
0407-0006 4 5
0407-0007 4 5
0407-0008 4 5
0408-0003 5 9
0408-0004 5 9
0408-0005 5
0408-0007 5
0408-0008 5
0408-0010 5 9
0408-0011 5 9
0408-0014 5 9
0408-0015 5 9
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 4 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 4 5
0410-0003 5 9
0410-0005 4 5
0410-0006 5 9
0410-0010 4 5
0410-0011 4 5
0410-0012 5 9
0410-0013 4 5
0410-0015 5 9
0410-0017 5 9
0410-0018 4 5
0414-0010 4
0414-0015 4
0414-0017 4
0414-0018 4 9
0414-0019 4
0414-0020 4 5
0414-0021 4
0415-0001 4 5
0415-0004 4 9
0415-0005 4 5
0415-0011 4 9
0415-0012 4 5
0415-0013 4 9
0415-0014 4 9
0415-0016 4 5
0415-0017 4 9
0415-0019 4 5
0415-0020 4 9
0415-0025 4 5
AE_HCxJonf-145 4 5
AE_HCXJonf-148 4 5
AE_HCXJonf-162 4
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4
AE_HCxJonf-183 4
AE0118-237 4 9
AE0118-238 4 9
AE0118-239 4
AE0118-240 4 9
AE0118-243 4 9
AE0118-244 4 9
AE0118-245 4 9
AE0118-246 4 9
AE0118-249 4 9
AE0206-159 4
AE0206-160 4
AE0206-161 5 7
AE0206-162 4 5
AE0206-163 5 7
AE0206-164 4
AE0206-165 4 7
AE0206-167 4
AE0206-168 4 7
AE0206-169 4
AE0206-170 4 5
AE0210-146 13 7
AE0210-147 4 5
AE0210-149 4 5
AE0210-150 4 7
AE0210-151 13 7
AE0210-152 5
AE0210-153 13 5
AE0210-154 4 7
AE0210-157 4 7
AE0210-158 13 5
AE0210-159 4 5
AE0210-162 13 5
AE0210-163 4 7
AE0210-164 13 5
AE0210-165 13 5
AE0210-166 13 5
AE0210-168 13 7
AE0210-169 13 7
AE0210-170 13 7
AE0210-171 13 7
AE0210-172 13 7
AE0210-173 4 5
AE0210-174 13 5
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 4 5
AE0213-179 4 5
AE0213-180 4 5
AE0213-181 4 5
AE0213-182 4 5
AE0213-183 4 5
AE0213-186 4 5
AE0213-187 4 5
AE0213-190 4 5
AE0213-193 4 5
AE0213-194 4 5
AE0213-195 4 5
AE0213-196 4 5
AE0213-197 4 5
AE0213-198 5
AE0213-199 4 5
AE0213-200 4 5
AE0213-201 4 5
AE0213-202 4 5
AE0213-205 4 5
AE0213-206 4 5
AE0251-323 5 7
AE0251-329 5 7
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 4
AE0251-343 4
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 5
AE0406-264 4 5
AE0406-266 4 5
AE0406-271 4 9
AE0406-274 4 5
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 5
AE0406-294 4 5
AE0406-298 4 5
Minneiska 4 5
NJ 303955 5
Arlet 4
Co-op 39 4 5
Pinova 4
Scired 5 7
Scifresh 5 9
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4 5
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4
G-14-059 4
G-14-060 4 5
G-14-061 4
G-14-062 4 5
G-14-064 4
G-14-065 4 5
G-14-069 4
G-14-067 4
G-14-068 4
G-14-071 4 5
G-14-073 4
G-14-074 4 5
G-14-075 4 5
G-14-076 4 5
G-14-077 4
G-14-078 4
G-14-080 4
G-09-232 5 9
G-09-233 5 9
G-09-234 5 9
G-09-235 5 9
G-09-236 5 9
G-09-237 5 7
G-09-238 5 7
G-09-239 5 9
G-09-240 5 9
G-09-241 5 7
G-09-242 5 7
G-09-243 5 9
G-09-245 5 9
G-09-246 5 7
G-09-258 5 9
G-09-259 5 9
G-09-260 5 7
G-09-261 5 7
G-09-262 5 7
G-09-263 5 9
G-09-264 5 9
G-09-265 5 9
G-09-266 5 7
G-09-267 5 9
G-09-268 5 7
0408-0021 5 9
Wijcik McIntosh 5 9
Beauty of Bath 22 5
Priam 4
Northern Spy 5
Co-op 15 4 5
MN 1702 4 7
WA 2 4 5
WA 5 5
Pitmaston Pineapple 4 5
0411-0011 4 9
0411-0017 4 5
0411-0023 4 9
AE0250-086 5 7
AE0250-087 4 5
AE0250-089 4 5
AE0250-090 4 7
AE0250-092 5 7
AE0250-093 4
AE0250-094 5 7
AE0250-095 4 7
Sonya 4 7
Co-op 38 5
AE0250-096 5
AE0250-327 4 5
Co-op 30 5 9
Jonagrimes 4 5
AE0211-036 4 5
G-07-039 5
PRI 14-152 4
PRI 47-176 5
G-07-041 5
BC-8S-27-43 4 7
AE0250-091 4
AE0250-097 4
AE0250-325 4
AE0250-326 4
AE0250-329 4
AE0250-333 4
AE0250-334 4
AE0250-335 4
AE0250-336 4
AE0250-338 4
AE0250-341 4
AE0211-038 13 5
AE0211-043 5 7
AE0211-045 13 5
AE0211-051 13 5
G-07-010 4 9
G-07-014 4 9
G-07-015 4 9
G-07-019 4 9
G-07-020 4 5
G-07-024 4 9
G-07-032 4
G-07-033 4
G-07-034 4 9
G-07-035 4 5
G-07-044 4 5
AE0211-053 5
AE0211-054 4 5
AE0250-088 4 5
AE0250-324 4
AE0250-328 4 5
AE0250-331 4 5
AE0250-332 4 5
AE0250-337 4
AE0250-339 4 5
Minnewashta 4 5
Autumn Crisp 4 5
G-14-066 4
Lu1-11-010 5
Lu1-11-013 4 5
Lu1-11-016 4 5
Lu1-11-017 5 9
Lu1-11-018 5 9
NJ 90 5 9
Lord Lambourne 7 9
Antonovka GH 5
Grimes Golden 2 4
Kidds Orange Red 5 9
Malus baccata Hansen #2 4 5
Malus baccata Jackii 5
William's Pride 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-39Apple-RosBREED-3.9K-2019849.7449.74
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930
GDsnp00342ABBA-AAAAB-BA--AABABBABAAAAA-
RosBREEDSNP_SNP_AG_30400322_Lg8_00342_MAF20_505993_exon1--AAAB-AAA-AAABB----AAAAABABB
RosBREEDSNP_SNP_AG_30403968_Lg8_00342_MAF30_1619977_exon6AAAAAABB--AB--A-----AA--AABB-
RosBREEDSNP_SNP_TG_30420390_Lg8_00342_MAF20_444762_exon1AAAAAABBBAAAA-AA--BAB---BBAA-
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:26855771..26894083. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation