Mdo-HB-08-33a

Haplotype Block Overview
Name Mdo-HB-08-33a
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 17 5
Rome Beauty Law 4 8
Jonafree 4
Redfree 10 43
Spartan 7 8
Wagener 8
Worcester Pearmain 7 8
Tsugaru 4 5
Golden Delicious 4 5
Fuji 4 8
Empire 8
Gala 4 8
Honeycrisp 6 7
Elstar 4
Marshall McIntosh 7 8
Cripps Pink 5 8
Granny Smith 5 8
Jonathan 4
Ralls Janet 2 4
Delicious 5 8
Discovery 4 8
Prima 4 8
821 10 43
Fiesta 5 8
Ingrid Marie 4 5
Idared 4 8
Esopus Spitzenburg 4
Braeburn 5 8
Sansa 4
Lodi 10 8
James Grieve 5 8
Cripps Red 5 8
Burgundy 4 8
Akane 4 7
Ambrosia 5 8
Aurora Golden Gala 5 8
Beacon 29 30
Ben Davis 4 5
Cameo 4 8
Chinook 4 8
Clivia 10 17
Co-op 17 4 5
Co-op 18 4
Dayton 10 4 8
Delblush 4 5
Delcorf 31 4
Delorgue 4
Dolgo 10 33
Geheimrat Dr. Oldenburg 10 5
Duchess of Oldenburg 6 7
Early Cortland 10 4 7
Empress 4 8
F2 26829-2-2 10 4
Fantazja 7 8
Fireside 4
Fortune 5 7
Frostbite 6 8
Ginger Gold 5 8
GMAL 4327 10
GMAL 4328 10 5
GMAL 4329 10 4
GMAL 4332 10 4
Goodland 7
Haralson 5 7
Honeygold 5
Hudson 8
Jonamac 4 8
Keepsake 4 6
Kerr 10 7
Lady Williams 10 8
Liberty 10 8
Linda 4 7
Longfield 10 45
Malinda 5 7
Melrose 4 5
MN 1627 4 7
MN 1628 4 8
MN 1691 4 7
MN 1706 10 4
MN 1708 6 7
MN 1760 4 5
MN 1764 6 8
MN 1789 4
MN 1802 4 6
MN 1836 6
MN 1837 4 7
MN 1839 5 7
MN 1888 4 7
MN 1899 5 8
MN 1940 4 8
MN 2016 4
AA-44 4 8
Monroe 4 8
Montgomery 7 8
Nicola 4 8
NJ 53 8
OR38T16 4
Oriole 4 7
PRI 14-126 4
PRI 14-510 4
PRI 1661-2 4 7
PRI 54-12 10 4
PRI 855-102 4
Primula 4 7
Raritan 8
Regent 5 7
Russian Seedling 4
Sawa 4 8
Sciros 4 8
Sharon 4 8
Silken 5 8
Wildung 4
Splendour 5 8
State Fair 5 6
NJ 55 5 7
Co-op 29 5
Sunrise 4 8
Sweet Sixteen 6 8
Topaz 8
Vanda 4 8
Vista Bella 8
Wealthy 4 7
Winter Banana 5
Yellow Newtown 10 8
Yellow Transparent 10 4
0407-0001 4 8
0407-0005 4 5
0407-0006 4 8
0407-0007 4 5
0407-0008 4 8
0408-0003 5 7
0408-0004 5 7
0408-0005 4 8
0408-0007 4 5
0408-0008 4 8
0408-0010 4 5
0408-0011 5 7
0408-0014 4 5
0408-0015 7 8
0409-0022 7 8
0409-0024 5 7
0409-0028 5 7
0409-0030 7 8
0409-0032 6 8
0409-0035 6 8
0409-0036 7 8
0409-0038 6 8
0409-0039 7 8
0409-0040 5 6
0409-0043 5 7
0409-0045 5 6
0410-0002 5 8
0410-0003 5 8
0410-0005 5
0410-0006 5 8
0410-0010 8
0410-0011 5 8
0410-0012 5 8
0410-0013 8
0410-0015 5 8
0410-0017 5
0410-0018 8
0414-0010 4 6
0414-0015 4 7
0414-0017 4 6
0414-0018 6 7
0414-0019 4 6
0414-0020 4 6
0414-0021 4 6
0415-0001 7
0415-0004 6 7
0415-0005 6 7
0415-0011 7
0415-0012 4 6
0415-0013 6 7
0415-0014 7 8
0415-0016 4 6
0415-0017 6 7
0415-0019 4 7
0415-0020 4 6
0415-0025 4 6
AE_HCxJonf-145 4 6
AE_HCXJonf-148 4 6
AE_HCxJonf-157 4 7
AE_HCXJonf-162 4 7
AE_HCXJonf-168 5 6
AE_HCxJonf-175 4 7
AE_HCxJonf-183 4 7
AE_HCxJonf-185 4 6
AE0118-237 7
AE0118-238 5 7
AE0118-239 6 7
AE0118-240 5 7
AE0118-243 6 7
AE0118-244 7
AE0118-245 5 7
AE0118-246 7
AE0118-249 5 7
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 4
AE0206-162 4
AE0206-163 5 8
AE0206-164 4 5
AE0206-165 5 8
AE0206-167 4 5
AE0206-168 5 8
AE0206-169 4 5
AE0206-170 4
AE0210-146 4
AE0210-147 10 8
AE0210-149 10 8
AE0210-150 4
AE0210-151 4
AE0210-152 4 8
AE0210-153 4 8
AE0210-154 4
AE0210-157 10 4
AE0210-158 4 8
AE0210-159 10 8
AE0210-162 4 8
AE0210-163 10 8
AE0210-164 4 8
AE0210-165 4 8
AE0210-166 4
AE0210-168 4
AE0210-169 4
AE0210-170 4
AE0210-171 4
AE0210-172 4
AE0210-173 10 8
AE0210-174 4 8
AE0213-175 4 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 4 5
AE0213-179 4 5
AE0213-180 10 8
AE0213-181 4 5
AE0213-182 4 8
AE0213-183 10 8
AE0213-186 4 5
AE0213-187 10 5
AE0213-190 10 8
AE0213-193 10 5
AE0213-194 10 5
AE0213-195 4 8
AE0213-196 4 8
AE0213-197 4 8
AE0213-198 5 8
AE0213-199 4 8
AE0213-200 4 5
AE0213-201 10 5
AE0213-202 10 8
AE0213-205 4 8
AE0213-206 10 8
AE0251-323 8
AE0251-325 8
AE0251-327 4 8
AE0251-329 8
AE0251-330 4 8
AE0251-331 4 6
AE0251-342 4 6
AE0251-343 4 6
AE0406-239 6 8
AE0406-254 5 6
AE0406-258 5 6
AE0406-259 5 6
AE0406-263 6 8
AE0406-264 7 8
AE0406-266 7 8
AE0406-271 5 7
AE0406-274 7 8
AE0406-278 6 8
AE0406-281 7 8
AE0406-286 6 8
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 6 8
AE0406-298 6 8
Minneiska 4 6
PRI 612-1 4 8
Arlet 4
Co-op 39 4 7
Pinova 10 4
Scired 8
Scifresh 5 8
0409-0025 6 8
0409-0026 5 7
0409-0027 5 6
0409-0031 7 8
0409-0033 6 8
0409-0047 7 8
G-14-050 10 5
G-14-052 10 5
G-14-054 4 5
G-14-055 4 5
G-14-056 10 4
G-14-057 10 4
G-14-059 10 4
G-14-060 4 5
G-14-061 4
G-14-062 10 4
G-14-064 10 4
G-14-065 10 5
G-14-069 4
G-14-067 10 4
G-14-068 4
G-14-071 10 5
G-14-073 4
G-14-074 4
G-14-075 10 5
G-14-076 10 5
G-14-077 10 4
G-14-078 10 4
G-14-080 4
G-09-232 5 8
G-09-233 5 8
G-09-234 5
G-09-235 5 8
G-09-236 5
G-09-237 5 8
G-09-238 8
G-09-239 5
G-09-240 5
G-09-241 5 8
G-09-242 8
G-09-243 5
G-09-245 5 8
G-09-246 8
G-09-258 5
G-09-259 5 8
G-09-260 5 8
G-09-261 5 8
G-09-262 5 8
G-09-263 5 8
G-09-264 5 8
G-09-265 5
G-09-266 8
G-09-267 5 8
G-09-268 8
0408-0021 7 8
Wijcik McIntosh 7 8
Beauty of Bath 4
Priam 4
Northern Spy 4 8
Co-op 15 4
MN 1702 4 8
WA 2 5 8
WA 5 4 5
Pitmaston Pineapple 8
0411-0011 4 7
0411-0017 4
0411-0023 4 7
AE0250-086 8
AE0250-087 4 8
AE0250-089 4 8
AE0250-090 6 8
AE0250-092 8
AE0250-093 4 6
AE0250-094 8
AE0250-095 4 6
Sonya 4 8
Co-op 38 4 5
AE0250-096 4
AE0250-327 10 7
Co-op 30 4 7
Jonagrimes 4 6
AE0211-036 10 5
G-07-039 4 8
PRI 47-176 10 4
G-07-041 4 8
BC-8S-27-43 4 8
AE0250-091 10 7
AE0250-097 10 7
AE0250-325 10 7
AE0250-326 10 6
AE0250-329 10 6
AE0250-333 10 7
AE0250-334 10 6
AE0250-335 10 6
AE0250-336 10 6
AE0250-338 10 6
AE0250-341 10 6
AE0211-038 10 8
AE0211-043 5
AE0211-045 10 8
AE0211-051 10 5
G-07-010 4 5
G-07-014 4 5
G-07-015 4 5
G-07-019 4 5
G-07-020 4 8
G-07-024 4 8
G-07-032 4 8
G-07-033 4 8
G-07-034 4 5
G-07-035 4 8
G-07-044 4 8
AE0211-053 4 8
AE0211-054 5 8
AE0250-088 4 7
AE0250-324 5 7
AE0250-328 4 7
AE0250-331 4 7
AE0250-332 4 6
AE0250-337 5 6
AE0250-339 4 6
Minnewashta 4 5
Autumn Crisp 4 5
G-14-066 10 4
Lu1-11-010 5 8
Lu1-11-013 5 8
Lu1-11-016 4 5
Lu1-11-017 7 8
Lu1-11-018 7 8
NJ 90 7 8
Lord Lambourne 7 8
Antonovka GH 10 8
Grimes Golden 2 4
Kidds Orange Red 5 8
Malus baccata Hansen #2 4 7
Malus baccata Jackii 43
Summerred 4 7
William's Pride 8
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-33aApple-RosBREED-3.9K-2019840.3340.33
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647
GDsnp00636--BABBB-BBA----ABBBBA-B--B-ABABBBBABBABBBBBBBA
RosBREEDSNP_SNP_CT_28268497_Lg8_00636_MAF10_1679449_exon1--BBABBBBABBBBBBBBBBBBA----BA-------BB--ABBB--
RosBREEDSNP_SNP_GA_28243778_Lg8_00636_MAF30_1686210_exon2ABBBBAnullBBBBnull---nullnullB---B-AB-nullBBBBABnullBA---BAAAnull--
RosBREEDSNP_SNP_TC_28263232_Lg8_00636_MAF20_1651668_exon1BAAABBBAB--B-BAA--BAA-BABBBBA--ABBAB--AABA-A--
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:22102104..22125767. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation