Mdo-HB-08-33

Haplotype Block Overview
Name Mdo-HB-08-33
Species Malus x domestica
Stock Haplotype [view all 424]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3
Rome Beauty Law 2 6
Jonafree 5 6
Redfree 3 6
Spartan 2 3
Wagener 2
Worcester Pearmain 2 3
Tsugaru 3 6
Golden Delicious 3
Fuji 2 6
Empire 2
Gala 2 3
Honeycrisp 2 3
Elstar 3 6
Marshall McIntosh 2 3
Cripps Pink 3 5
Granny Smith 3 5
Jonathan 6
Ralls Janet 2 6
Delicious 2 3
Discovery 2 4
Prima 5 6
821 11 12
Fiesta 2 3
Ingrid Marie 3 6
Idared 2 6
Esopus Spitzenburg 5 6
Braeburn 2 3
Sansa 3 6
Lodi 2 5
James Grieve 2 3
Cripps Red 3 5
Burgundy 2 6
Akane 3 6
Ambrosia 2 3
Aurora Golden Gala 2 3
Beacon 26 27
Ben Davis 3 6
Cameo 2 3
Chinook 2 3
Clivia 3 5
Co-op 17 3 6
Co-op 18 35 36
Dayton 11 5 6
Delblush 3
Delorgue 3 6
Dolgo 5
Geheimrat Dr. Oldenburg 26 5
Duchess of Oldenburg 2 3
Early Cortland 3 5 6
Empress 2 6
F2 26829-2-2 11 6
Fantazja 2 3
Fireside 6
Fortune 3
Frostbite 2 5
Ginger Gold 2 3
GMAL 4327 5 6
GMAL 4328 3 5
GMAL 4329 5
GMAL 4332 5
Goodland 3
Haralson 3
Honeygold 3
Hudson 2 5
Jersey Black 2 3
Jonamac 2 6
Keepsake 2 5
Kerr 3 5
Lady Williams 5
Liberty 2 6
Linda 3 6
Liveland Raspberry 3 5
Longfield 2 5
Macoun 2
Malinda 3
Melba 3 5
Melrose 3 6
MN 1627 3
MN 1628 5
MN 1691 3 6
MN 1706 27 31
MN 1708 2 3
MN 1760 3 6
MN 1764 2 5
MN 1789 3 6
MN 1802 2 5
MN 1836 2
MN 1837 3
MN 1839 3
MN 1888 3
MN 1899 3 5
MN 1940 2 6
MN 2016 6
AA-44 2 6
Monroe 2 6
Montgomery 2 3
Nicola 2 3
NJ 53 2 5
Oriole 3 6
PRI 14-126 3 6
PRI 14-510 3 6
PRI 16-144 3
PRI 1661-2 3 6
PRI 54-12 6
PRI 855-102 3 6
Primula 3 5
Raritan 5
Regent 3
Rubin 2 3
Russian Seedling 34 35
Sawa 2 3
Sciros 2 3
Sharon 2 6
Silken 2 3
Wildung 6
Splendour 2 3
State Fair 2 3
NJ 55 3
Co-op 29 3
Sunrise 2 3
Sweet Sixteen 2 5
Topaz 2
Vista Bella 2 5
Wealthy 3 6
Winesap 3
Winter Banana 3
Yellow Newtown 2 5
Yellow Transparent 5 6
0407-0001 2 3
0407-0005 3 6
0407-0006 2 6
0407-0007 3
0407-0008 2 6
0408-0003 3
0408-0004 3
0408-0005 2 6
0408-0007 3 6
0408-0008 2 6
0408-0010 3 6
0408-0011 3
0408-0014 3 6
0408-0015 2 3
0409-0022 2 3
0409-0024 3
0409-0028 3
0409-0030 2 3
0409-0032 2
0409-0035 2
0409-0036 2 3
0409-0038 2
0409-0039 2 3
0409-0040 2 3
0409-0043 3
0409-0045 2 3
0410-0002 3 5
0410-0003 2 3
0410-0005 3
0410-0006 2 3
0410-0010 2 5
0410-0011 3 5
0410-0012 2 3
0410-0013 2 5
0410-0015 2 3
0410-0017 3
0410-0018 2 5
0414-0010 2 3
0414-0015 3 6
0414-0017 2 3
0414-0018 2 3
0414-0019 2 6
0414-0020 2 6
0414-0021 2 3
0415-0001 3
0415-0004 2 3
0415-0005 2 3
0415-0011 3
0415-0012 2 6
0415-0013 2 3
0415-0014 2 3
0415-0016 2 6
0415-0017 2 3
0415-0019 3 6
0415-0020 2 6
0415-0025 2 6
AE_HCxJonf-145 2 6
AE_HCXJonf-148 2 6
AE_HCxJonf-157 3 5
AE_HCXJonf-162 3 5
AE_HCXJonf-168 2 3
AE_HCxJonf-175 3 5
AE_HCxJonf-183 3 5
AE0118-237 3
AE0118-238 3
AE0118-239 2 3
AE0118-240 3
AE0118-243 2 3
AE0118-244 3
AE0118-245 3
AE0118-246 3
AE0118-249 3
AE0206-159 3
AE0206-160 3
AE0206-161 3 6
AE0206-162 3 6
AE0206-163 2 3
AE0206-164 3
AE0206-165 2 3
AE0206-167 3
AE0206-168 2 3
AE0206-169 3
AE0206-170 3 6
AE0210-146 3 5
AE0210-147 2 5
AE0210-149 2 5
AE0210-150 3 5
AE0210-151 3 5
AE0210-152 2 6
AE0210-153 2 5
AE0210-154 3 5
AE0210-157 3 5
AE0210-158 2 5
AE0210-159 2 5
AE0210-162 2 5
AE0210-163 2 5
AE0210-164 2 5
AE0210-165 2 5
AE0210-166 3 5
AE0210-168 3 5
AE0210-169 3 5
AE0210-170 3 5
AE0210-171 3 5
AE0210-172 3 5
AE0210-173 2 5
AE0210-174 2 5
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 3 5
AE0213-178 3 5
AE0213-179 3 5
AE0213-180 2 5
AE0213-181 3 5
AE0213-182 2 5
AE0213-183 2 5
AE0213-186 3 5
AE0213-187 3 5
AE0213-190 2 5
AE0213-193 3 5
AE0213-194 3 5
AE0213-195 2 5
AE0213-196 2 5
AE0213-197 2 5
AE0213-198 2 3
AE0213-199 2 5
AE0213-200 3 5
AE0213-201 3 5
AE0213-202 2 5
AE0213-205 2 5
AE0213-206 2 5
AE0251-323 2 5
AE0251-327 3 5
AE0251-329 2 5
AE0251-330 3 5
AE0251-331 2 3
AE0251-342 2 3
AE0251-343 2 3
AE0406-239 2
AE0406-254 2 3
AE0406-258 2 3
AE0406-259 2 3
AE0406-264 2 3
AE0406-266 2 3
AE0406-271 3
AE0406-274 2 3
AE0406-278 2
AE0406-281 2 3
AE0406-286 2
AE0406-288 2 3
AE0406-289 2 3
AE0406-294 2
AE0406-298 2
Minneiska 2 6
PRI 612-1 2 6
Arlet 3 6
Co-op 39 3 6
Pinova 3 5
Scired 2
Scifresh 2 3
0409-0025 2
0409-0026 3
0409-0027 2 3
0409-0031 2 3
0409-0033 2
0409-0047 2 3
G-14-050 3 5
G-14-052 3 5
G-14-054 3
G-14-055 3
G-14-056 5 6
G-14-057 5 6
G-14-059 5 6
G-14-060 3
G-14-061 3 6
G-14-062 5 6
G-14-064 5 6
G-14-065 3 5
G-14-069 3 6
G-14-067 5 6
G-14-068 3 6
G-14-071 3 5
G-14-073 3 6
G-14-074 3 6
G-14-075 3 5
G-14-076 3 5
G-14-077 5 6
G-14-078 5 6
G-14-080 3 6
G-09-232 2 3
G-09-233 2 3
G-09-234 3
G-09-235 2 3
G-09-236 3
G-09-237 2 3
G-09-238 2
G-09-239 3
G-09-240 3
G-09-241 2 3
G-09-242 2
G-09-243 3
G-09-245 2 3
G-09-246 2
G-09-258 3
G-09-259 2 3
G-09-260 2 3
G-09-261 2 3
G-09-262 2 3
G-09-263 2 3
G-09-264 2 3
G-09-265 3
G-09-267 2 3
G-09-268 2
0408-0021 2 3
Wijcik McIntosh 11 6
Beauty of Bath 4
Priam 3 6
Northern Spy 5
Co-op 15 6
MN 1702 5 6
WA 2 2 3
WA 5 3 6
Pitmaston Pineapple 2 5
0411-0011 3 6
0411-0017 6
0411-0023 3 6
AE0250-086 2 5
AE0250-087 3 5
AE0250-089 3 5
AE0250-090 2
AE0250-092 2 5
AE0250-093 2 3
AE0250-094 2 5
AE0250-095 2 3
Sonya 2 3
Co-op 38 3 6
AE0250-096 6
AE0250-327 11 3
Co-op 30 3 6
Jonagrimes 2 3
AE0211-036 3 5
G-07-039 2 6
PRI 14-152 3 6
PRI 47-176 11 6
G-07-041 2 6
BC-8S-27-43 2 3
AE0250-091 3 5
AE0250-097 3 6
AE0250-325 3 6
AE0250-326 2 5
AE0250-329 2 6
AE0250-333 3 5
AE0250-334 2 6
AE0250-335 2 6
AE0250-336 2 6
AE0250-338 2 5
AE0250-341 2 6
AE0211-038 2 5
AE0211-043 3
AE0211-045 2 5
AE0211-051 3 5
G-07-010 3
G-07-014 3
G-07-015 3
G-07-020 5 6
G-07-024 3 5
G-07-032 3 5
G-07-033 3 5
G-07-035 5 6
G-07-044 5 6
AE0211-053 2 6
AE0211-054 2 3
AE0250-088 3 6
AE0250-324 3
AE0250-328 3 6
AE0250-331 3 6
AE0250-332 2 6
AE0250-337 2 3
AE0250-339 2 6
Minnewashta 3 6
Autumn Crisp 3 6
G-14-066 5 6
Lu1-11-010 2 3
Lu1-11-013 2 3
Lu1-11-016 3 6
Lu1-11-017 2 3
Lu1-11-018 2 3
NJ 90 2 3
Lord Lambourne 2 3
Antonovka GH 2 5
Grimes Golden 2 3
Kidds Orange Red 2 3
Malus baccata Hansen #2 5
Malus baccata Jackii 5
Summerred 3
William's Pride 2 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-33Apple-RosBREED-3.9K-2019840.3340.33
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738
RosBREEDSNP_SNP_AG_28172464_Lg8_00293_MAF20_1656835_exon1BAABA--BBBB-----BA--B--BABBBAA--AABA-
RosBREEDSNP_SNP_CT_28160723_Lg8_00293_MAF20_1625146_exon4BBBAB--B-BA--BBAABBABBABBBA--A--ABAAB
RosBREEDSNP_SNP_GA_28158121_Lg8_00293_MAF40_666415_exon1ABBABABAAAA----------AA-ABAABABAAABAB
RosBREEDSNP_SNP_TC_28185282_Lg8_00293_MAF50_MDP0000183649_exon1BA-BB----AABA-BBBAA-BBB-AB-BABAAABB--
Alignments
Feature NameTypeLocationAnalysis
Chr08 chromosome Chr08:21966191..21993301. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation