Mdo-HB-07-5

Haplotype Block Overview
Name Mdo-HB-07-5
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 9
Rome Beauty Law 2
Jonafree 10 9
Redfree 11 3
Spartan 10
Wagener 17 2
Worcester Pearmain 11 2
Tsugaru 2 3
Golden Delicious 2 4
Fuji 10 4
Empire 10 4
Gala 10 2
Honeycrisp 2 9
Elstar 10 2
Marshall McIntosh 10
Cripps Pink 11 2
Granny Smith 4 6
Jonathan 10 3
Ralls Janet 10 6
Delicious 10 4
Discovery 11 3
Prima 11 4
821 10
Fiesta 10 9
Ingrid Marie 10
Idared 10 2
Esopus Spitzenburg 10 2
Braeburn 3 4
Sansa 10 2
Lodi 10 2
James Grieve 10 9
Cripps Red 11 4
Burgundy 10
Akane 10 2
Ambrosia 10 4
Aurora Golden Gala 2 4
Beacon 2 4
Ben Davis 10 13 14 4
Cameo 10 4
Chinook 10
Clivia 10 9
Co-op 17 2 4
Co-op 18 2 6
Dayton 10 11 2 3
Delblush 10 4
Delorgue 10 5
Dolgo 10 11
Geheimrat Dr. Oldenburg 10 28
Duchess of Oldenburg 5 6
Early Cortland 10 14 2
Empress 10 3
F2 26829-2-2 14 2
Fantazja 10 11
Fireside 10 6
Fortune 11 14
Frostbite 10 9
Ginger Gold 2
GMAL 4327 11
GMAL 4328 11 2
GMAL 4329 10 11
GMAL 4332 11
Goodland 10 5
Haralson 4 6
Honeygold 4 6
Hudson 10 9
Jersey Black 28 9
Jonamac 10 3
Keepsake 9
Kerr 10 6
Lady Williams 11 6
Liberty 2 28
Linda 11 6
Liveland Raspberry 11 4
Longfield 10 6
Macoun 10 28
Malinda 14 4
Mantet 10 26
Melba 10 11
Melrose 10 4
MN 1627 2 5
MN 1628 10 9
MN 1691 10 5
MN 1706 10 2
MN 1708 5 9
MN 1760 6 9
MN 1764 10 6
MN 1789 10 5
MN 1802 10 4
MN 1836 10 9
MN 1837 10 2
MN 1839 5 6
MN 1888 2 5
MN 1899 10 6
MN 1940 10 5
MN 2016 10 5
AA-44 10
Monroe 10 2
Montgomery 10
Nicola 10 4
NJ 31 9
NJ 53 10
Oriole 3 4
PRI 14-126 2 4
PRI 14-510 14 4
PRI 1661-2 10
PRI 54-12 2 3
PRI 855-102 10
Primula 10 3
Raritan 11 2
Regent 10 6
Russian Seedling 10 47
Sawa 10 11
Sciros 2 4
Sharon 10 28
Silken 2 4
Wildung 10 6
Splendour 10 4
State Fair 10 6
NJ 55 14 2
Co-op 29 4 9
Sunrise 2 4
Sweet Sixteen 10 9
Topaz 11 9
Vista Bella 10 11
Wealthy 3 6
Winesap 10
Winter Banana 10 9
Yellow Newtown 2 45
Yellow Transparent 11 2
0407-0001 4
0407-0005 10 2
0407-0006 10 2
0407-0007 4
0407-0008 4
0408-0003 10 4
0408-0004 2 4
0408-0005 2 4
0408-0007 10 2
0408-0008 10 4
0408-0010 10 4
0408-0011 10 4
0408-0014 2
0408-0015 10 2
0409-0022 2 9
0409-0024 2
0409-0028 2
0409-0030 4 9
0409-0032 2
0409-0035 2 4
0409-0036 4 9
0409-0038 4 9
0409-0039 2
0409-0040 2 9
0409-0043 2 4
0409-0045 2 4
0410-0002 2 6
0410-0003 2 4
0410-0005 2 6
0410-0006 2 6
0410-0010 2 4
0410-0011 2 4
0410-0012 4
0410-0013 4
0410-0015 4 6
0410-0017 4 6
0410-0018 4
0414-0010 10 2
0414-0015 10 2
0414-0017 4 9
0414-0018 10 9
0414-0019 2 4
0414-0020 10 9
0414-0021 4 9
0415-0001 2 9
0415-0004 10 9
0415-0005 2
0415-0011 10 2
0415-0012 2
0415-0013 2 9
0415-0014 10 2
0415-0016 10 2
0415-0017 10 2
0415-0019 10 2
0415-0020 2 9
0415-0025 2
AE_HCxJonf-145 9
AE_HCXJonf-148 2 9
AE_HCxJonf-157 10 2
AE_HCXJonf-162 9
AE_HCXJonf-168 4 9
AE_HCxJonf-175 10 9
AE_HCxJonf-183 9
AE_HCxJonf-185 2 9
AE0118-237 10 2
AE0118-238 6 9
AE0118-239 6
AE0118-240 10 2
AE0118-243 2 6
AE0118-244 2 6
AE0118-245 2 6
AE0118-246 10 2
AE0118-249 10 2
AE0206-159 10 6
AE0206-160 10 6
AE0206-161 10 6
AE0206-162 10 5
AE0206-163 10 5
AE0206-164 10 6
AE0206-165 10 5
AE0206-167 10 6
AE0206-168 10 5
AE0206-169 10 5
AE0206-170 10 5
AE0210-147 10 4
AE0210-149 11 4
AE0210-150 10 2
AE0210-151 11 4
AE0210-152 2 6
AE0210-153 11 2
AE0210-154 10 4
AE0210-157 11 2
AE0210-158 11 4
AE0210-159 11 4
AE0210-162 11 4
AE0210-163 11 4
AE0210-164 11 2
AE0210-165 11 2
AE0210-166 11 2
AE0210-168 11 2
AE0210-169 11 2
AE0210-170 11 2
AE0210-171 10 4
AE0210-172 10 4
AE0210-173 11 4
AE0210-174 10 2
AE0213-175 11 2
AE0213-176 11 2
AE0213-177 11 2
AE0213-178 11 2
AE0213-179 11 2
AE0213-180 11 2
AE0213-181 11 2
AE0213-182 11 2
AE0213-183 11 2
AE0213-186 11 2
AE0213-187 11 2
AE0213-190 11 2
AE0213-193 11 2
AE0213-194 11 2
AE0213-195 11 2
AE0213-196 11 2
AE0213-197 11 2
AE0213-198 10 2
AE0213-199 11 2
AE0213-200 11 2
AE0213-201 11 2
AE0213-202 11 2
AE0213-205 11 2
AE0213-206 11 2
AE0251-323 10
AE0251-325 10
AE0251-327 10
AE0251-329 10 9
AE0251-330 10 9
AE0251-331 10
AE0251-342 10
AE0251-343 10
AE0406-239 2 9
AE0406-254 2 9
AE0406-258 2
AE0406-259 2
AE0406-263 2 4
AE0406-264 2 9
AE0406-266 2
AE0406-271 4 9
AE0406-274 2 9
AE0406-278 4 9
AE0406-281 2 4
AE0406-286 4 9
AE0406-288 2 9
AE0406-289 2
AE0406-294 2
AE0406-298 2
Minneiska 5 9
NJ 303955 14
PRI 612-1 10 2
Arlet 10 4
Co-op 39 2 3
Pinova 2 9
Scired 10 2
Scifresh 2 3
0409-0025 2 4
0409-0026 2 4
0409-0027 2
0409-0031 2
0409-0033 2 4
0409-0047 2 9
G-14-050 2 4
G-14-052 10 2
G-14-054 2 4
G-14-055 2 4
G-14-056 4 9
G-14-057 10 2
G-14-059 2 4
G-14-060 4 9
G-14-061 4 9
G-14-062 2 4
G-14-064 10 2
G-14-065 4 9
G-14-069 10 2
G-14-067 10 2
G-14-068 10 9
G-14-071 2 4
G-14-073 2 4
G-14-074 4 9
G-14-075 10 2
G-14-076 10 9
G-14-077 4 9
G-14-078 2 4
G-14-080 4 9
G-09-232 2 4
G-09-233 2 3
G-09-234 2 4
G-09-235 2 3
G-09-236 2 3
G-09-237 2 3
G-09-238 2 3
G-09-239 2 3
G-09-240 2 4
G-09-241 2 4
G-09-242 2 4
G-09-243 2 4
G-09-245 2 4
G-09-246 2 3
G-09-258 2 3
G-09-259 2 3
G-09-260 2 3
G-09-261 2 4
G-09-262 2 4
G-09-263 2 4
G-09-264 2 4
G-09-265 2 3
G-09-266 2 3
G-09-267 2 4
G-09-268 2 3
0408-0021 2 4
Wijcik McIntosh 10
Beauty of Bath 3
Priam 2 3
Northern Spy 10 9
Co-op 15 2
MN 1702 10
WA 2 10
WA 5 2 4
Pitmaston Pineapple 10 6
0411-0011 10 4
0411-0017 10 2
0411-0023 2 4
AE0250-086 10 9
AE0250-087 10
AE0250-089 10
AE0250-090 10 9
AE0250-092 10
AE0250-093 10
AE0250-094 10
AE0250-095 10
Sonya 2 4
Co-op 38 2
AE0250-096 10 3
Co-op 30 10 2
Jonagrimes 2 5
AE0211-036 2 9
G-07-039 10
PRI 14-152 2 4
PRI 47-176 10 14
G-07-041 10
BC-8S-27-43 10
AE0250-091 11 2
AE0250-097 11 2
AE0250-325 11 2
AE0250-326 11 2
AE0250-329 11 9
AE0250-333 11 9
AE0250-334 11 9
AE0250-335 11 2
AE0250-336 11 9
AE0250-338 11 9
AE0250-341 11 9
AE0211-038 11 2
AE0211-043 2
AE0211-045 2
AE0211-051 2
G-07-014 10 6
G-07-015 10 4
G-07-019 2 6
G-07-020 2 4
G-07-024 10 6
G-07-032 2 4
G-07-033 2 4
G-07-034 2 4
G-07-035 2 4
G-07-044 10 4
AE0211-053 2 5
AE0211-054 2 5
AE0250-088 2 5
AE0250-324 2 6
AE0250-328 6 9
AE0250-331 2 5
AE0250-332 6 9
AE0250-337 5 9
AE0250-339 6 9
Minnewashta 5 6
Autumn Crisp 10 2
G-14-066 10 2
Lu1-11-013 10 4
Lu1-11-016 10
Lu1-11-017 14 4
Lu1-11-018 10 14
NJ 90 10 2
Lord Lambourne 11 9
Antonovka GH 10
Grimes Golden 2 3
Kidds Orange Red 10
Malus baccata Hansen #2 4 9
Malus baccata Jackii 10
Summerred 46 51
William's Pride 10 11
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-07-5Apple-RosBREED-3.9K-201975.895.89
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051
GDsnp00802BBABBBBBBB--A--BBBABB--BB-AABBBB--A--BAABBBA-BBB-B
RosBREEDSNP_SNP_CA_2851448_Lg7_00802_MAF30_MDP0000224757_exon1BBBBA--ABAAAABBABABB-----BB-BABBAB-----BAABABBABBB
RosBREEDSNP_SNP_GA_2872650_Lg7_00802_MAF10_MDP0000245985_exon4BBBABABBBABBBBBBBABBBBBBABBBB--AABB----BABBB-AAB--
RosBREEDSNP_SNP_TC_2863328_Lg7_00802_MAF10_189782_exon1ABABABAAAAAAAAA--AAAAA-AAAAA-AB---A------A-A-AAB--
RosBREEDSNP_SNP_TC_2869226_Lg7_00802_MAF50_688320_exon1AABBBBAABBABAABAA---B-----AABBBBBABAB------BABABBB
Alignments
Feature NameTypeLocationAnalysis
Chr07 chromosome Chr07:3012278..3033407. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation