Mdo-HB-07-16

Haplotype Block Overview

Name	Mdo-HB-07-16
Species	Malus x domestica
Stock Haplotype	[view all 430]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	5 6
Rome Beauty Law	10 4
Jonafree	4 6
Redfree	6
Spartan	5 6
Wagener	20 5
Worcester Pearmain	6
Tsugaru	4 6
Golden Delicious	4 5
Fuji	5 6
Empire	4 5
Gala	5
Honeycrisp	4 7
Elstar	5 6
Marshall McIntosh	4 5
Cripps Pink	4 6
Granny Smith	5
Jonathan	6
Ralls Janet	3 6
Delicious	5 6
Discovery	6 61
Prima	5 6
821	14
Fiesta	5 6
Ingrid Marie	5 6
Idared	5 6
Esopus Spitzenburg	5 6
Braeburn	6
Sansa	5 6
Lodi	4 7
James Grieve	4 6
Cripps Red	5 6
Burgundy	10 6
Akane	6
Ambrosia	5 6
Aurora Golden Gala	5
Beacon	5 7
Ben Davis	5 6
Cameo	5 6
Chinook	5 6
Clivia	4 6
Co-op 17	4 6
Co-op 18	4 6
Dayton	30 4 6
Delblush	5 6
Delcorf	6
Delorgue	6
Dolgo	17
Geheimrat Dr. Oldenburg	33 4
Duchess of Oldenburg	6 7
Early Cortland	5 6 7
Empress	30 6
F2 26829-2-2	4 6
Fantazja	5 6
Fireside	37 7
Fortune	6
Frostbite	10 6
Ginger Gold	4
GMAL 4327	4 6
GMAL 4328	4 6
GMAL 4329	4 6
GMAL 4332	42 6
Goodland	5 6
Haralson	5 7
Honeygold	4 5
Hudson	4 7
Jersey Black	3 6
Jonamac	4 6
Keepsake	10 7
Kerr	17 7
Lady Williams	5 6
Liberty	4 6
Linda	6 7
Liveland Raspberry	5 6
Longfield	6
Macoun	5 6
Malinda	5
Mantet	5
Melba	4 6
Melrose	5 6
MN 1627	4 6
MN 1628	10 4
MN 1691	37 6
MN 1706	4
MN 1708	10 4
MN 1760	10 5
MN 1764	10 5
MN 1789	37 6
MN 1802	4 5
MN 1836	5 7
MN 1837	37 4
MN 1839	35 6
MN 1888	4 6
MN 1899	6 7
MN 1940	30 6
MN 2016	6 7
AA-44	30 6
Monroe	10 6
Montgomery	4
Nicola	5
NJ 31	10 4
NJ 53	30 4
Oriole	5 6
PRI 14-126	5 6
PRI 14-510	5 6
PRI 1661-2	4 6
PRI 54-12	4 7
PRI 855-102	6
Primula	4 6
Raritan	30 6
Regent	4 7
Russian Seedling	10 4
Sawa	5 6
Sciros	5
Sharon	5 7
Silken	4
Wildung	7
Splendour	5 6
State Fair	5 7
NJ 55	4 6
Co-op 29	4 5
Sunrise	4
Sweet Sixteen	6 7
Topaz	4 6
Vista Bella	30 6
Wealthy	6 7
Winesap	12 6
Winter Banana	57 58
Yellow Newtown	30 59
Yellow Transparent	7
0407-0001	5
0407-0005	5 6
0407-0006	5 6
0407-0007	5
0407-0008	5
0408-0003	5 6
0408-0004	4 5
0408-0005	5 6
0408-0007	5 6
0408-0008	5 6
0408-0010	5 6
0408-0011	5 6
0408-0014	4 5
0408-0015	5 6
0409-0022	4 5
0409-0024	5 7
0409-0028	4 5
0409-0030	5 7
0409-0032	4 5
0409-0035	4 5
0409-0036	5 7
0409-0038	5 7
0409-0039	4 5
0409-0040	5 7
0409-0043	4 5
0409-0045	4 5
0410-0002	5
0410-0003	5
0410-0005	5
0410-0006	5
0410-0010	5
0410-0011	5
0410-0012	5
0410-0013	5
0410-0015	5
0410-0017	5
0410-0018	5
0414-0010	4 6
0414-0015	6 7
0414-0017	6 7
0414-0018	6 7
0414-0019	4 5
0414-0020	6 7
0414-0021	5 7
0415-0001	4 7
0415-0004	6 7
0415-0005	4
0415-0011	4 6
0415-0012	4
0415-0013	4 7
0415-0014	4 5
0415-0016	4 6
0415-0017	6 7
0415-0019	4 6
0415-0020	4 7
0415-0025	4 7
AE_HCxJonf-145	4
AE_HCXJonf-148	4
AE_HCxJonf-157	4 6
AE_HCXJonf-162	4 7
AE_HCXJonf-168	5 7
AE_HCxJonf-175	6 7
AE_HCxJonf-183	4
AE0118-237	4 7
AE0118-238	7
AE0118-239	35 4
AE0118-240	4
AE0118-243	4 7
AE0118-244	4 7
AE0118-245	4 7
AE0118-246	4
AE0118-249	4 7
AE0206-159	5 6
AE0206-160	5 6
AE0206-161	5 7
AE0206-162	6
AE0206-163	6
AE0206-164	6 7
AE0206-165	5 6
AE0206-167	5 6
AE0206-168	5 6
AE0206-169	6
AE0206-170	6
AE0210-146	4
AE0210-147	4
AE0210-149	4 6
AE0210-150	4 6
AE0210-151	4 6
AE0210-152	4 7
AE0210-153	4 6
AE0210-154	4
AE0210-157	4 6
AE0210-158	4 6
AE0210-159	4 6
AE0210-162	4 6
AE0210-163	4
AE0210-164	4 6
AE0210-165	4 6
AE0210-166	4 6
AE0210-168	4 6
AE0210-169	4 6
AE0210-170	4
AE0210-171	4
AE0210-172	4
AE0210-173	4 6
AE0210-174	4
AE0213-175	4 6
AE0213-176	4 6
AE0213-177	4 42
AE0213-179	4 6
AE0213-180	4 42
AE0213-181	4 42
AE0213-182	4 6
AE0213-183	4 42
AE0213-186	4 6
AE0213-187	4 42
AE0213-190	4 42
AE0213-193	4 42
AE0213-194	4 42
AE0213-195	4 42
AE0213-196	4 6
AE0213-197	4 42
AE0213-198	4
AE0213-199	4 42
AE0213-200	4 6
AE0213-201	4 6
AE0213-202	4 6
AE0213-205	4 6
AE0213-206	4 42
AE0251-323	5 6
AE0251-325	6
AE0251-327	5 6
AE0251-329	5 7
AE0251-330	5 7
AE0251-331	5 6
AE0251-342	6
AE0251-343	6
AE0406-239	4 7
AE0406-254	4 7
AE0406-258	4
AE0406-259	4
AE0406-263	4 7
AE0406-264	4 7
AE0406-266	4
AE0406-271	4 7
AE0406-274	4 7
AE0406-278	4 7
AE0406-281	4
AE0406-286	4 7
AE0406-288	4 7
AE0406-289	4
AE0406-294	4
AE0406-298	4
Minneiska	6 7
NJ 303955	6
PRI 612-1	6
Arlet	5 6
Co-op 39	4 6
Pinova	4 6
Scired	5 6
Scifresh	5 6
0409-0025	4 5
0409-0026	5 7
0409-0027	4 5
0409-0031	4 5
0409-0033	5 7
0409-0047	5 7
G-14-050	4 6
G-14-052	4 6
G-14-054	6
G-14-055	6
G-14-056	6
G-14-057	6
G-14-059	4 6
G-14-060	6
G-14-061	6
G-14-062	4 6
G-14-064	4 6
G-14-065	6
G-14-069	4 6
G-14-067	4 6
G-14-068	6
G-14-071	4 6
G-14-073	4 6
G-14-074	6
G-14-075	4 6
G-14-076	6
G-14-077	6
G-14-078	4 6
G-14-080	6
G-09-232	4 6
G-09-233	4 6
G-09-234	4 6
G-09-235	4 6
G-09-236	4 6
G-09-237	4 6
G-09-238	4 6
G-09-239	4 6
G-09-240	4 6
G-09-241	4 6
G-09-242	4 6
G-09-243	4 6
G-09-245	4 6
G-09-246	4 6
G-09-258	4 6
G-09-259	4 6
G-09-260	4 6
G-09-261	4 6
G-09-262	4 6
G-09-263	4 6
G-09-264	4 6
G-09-265	4 6
G-09-266	4 6
G-09-267	4 6
G-09-268	4 6
0408-0021	4 5
Wijcik McIntosh	56 57
Beauty of Bath	54 61
Priam	6
Northern Spy	4 7
Co-op 15	10 6
MN 1702	37 6
WA 2	5 6
WA 5	5 6
Pitmaston Pineapple	31 6
0411-0011	5 6
0411-0017	4 6
0411-0023	4 5
AE0250-086	6 7
AE0250-087	5 6
AE0250-089	5 6
AE0250-090	5 7
AE0250-092	5 6
AE0250-093	5 6
AE0250-094	6
AE0250-095	6
Sonya	5 6
Co-op 38	4
AE0250-096	37 4
AE0250-327	4 6
Co-op 30	4 6
Jonagrimes	4 6
AE0211-036	4
G-07-039	4 6
PRI 14-152	4 5
PRI 47-176	6
G-07-041	5 6
BC-8S-27-43	5 6
AE0250-091	4
AE0250-097	4 6
AE0250-325	4
AE0250-326	4 6
AE0250-329	6 7
AE0250-333	4 7
AE0250-334	4 6
AE0250-335	4
AE0250-336	4 7
AE0250-338	4
AE0250-341	6 7
AE0211-038	4 6
AE0211-043	4
AE0211-045	4
AE0211-051	4
G-07-010	5 6
G-07-014	5 6
G-07-015	5 6
G-07-019	5
G-07-020	5 6
G-07-024	5
G-07-032	5 6
G-07-033	5 6
G-07-034	5
G-07-035	5
G-07-044	5 6
AE0211-053	4 6
AE0211-054	4 6
AE0250-088	4 6
AE0250-324	4 7
AE0250-328	7
AE0250-331	4 6
AE0250-332	7
AE0250-337	6 7
AE0250-339	6 7
Minnewashta	6 7
Autumn Crisp	4 6
G-14-066	4 6
Lu1-11-010	6
Lu1-11-013	5
Lu1-11-016	5
Lu1-11-017	5 6
Lu1-11-018	6
NJ 90	4 6
Lord Lambourne	4 6
Antonovka GH	10 6
Grimes Golden	3 4
Kidds Orange Red	5 6
Malus baccata Hansen #2	58 60
Malus baccata Jackii	6
Summerred	44 6
William's Pride	30 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-07-16	Apple-RosBREED-3.9K-2019	7	19.17	19.17

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61
GDsnp02619	B	A	B	A	B	A	-	-	B	B	A	B	B	B	B	B	A	B	A	A	A	-	B	A	-	-	-	B	A	B	A	B	B	A	-	B	B	B	-	A	A	A	B	-	-	A	-	A	B	-	A	A	B	A	B	A	A	B	B	A
RosBREEDSNP_SNP_AG_8019927_Lg7_02619_MAF10_MDP0000765480_exon2	-	-	A	A	A	B	-	-	A	A	A	-	A	-	A	A	A	A	B	A	B	A	A	A	A	A	B	A	A	B	B	A	A	B	A	A	-	-	A	-	A	A	-	A	-	A	B	A	A	A	B	-	-	B	A	A	A	A	B	A
RosBREEDSNP_SNP_AG_8026567_Lg7_02619_MAF10_MDP0000322530_exon2	-	-	A	A	A	B	-	-	B	-	-	-	A	-	A	A	A	A	A	A	B	A	A	A	A	A	B	A	A	A	-	B	-	-	-	A	A	A	A	-	B	A	A	A	A	A	B	A	A	A	B	A	B	B	A	A	A	A	B	A
RosBREEDSNP_SNP_CT_7977881_Lg7_02619_MAF30_MDP0000223306_exon2	-	-	B	A	B	A	-	-	B	-	-	-	B	-	-	B	A	B	A	-	A	B	B	A	-	B	A	B	B	B	-	B	B	A	-	A	A	B	-	-	B	B	B	A	B	A	-	-	-	-	A	B	A	-	A	B	A	A	B	B
RosBREEDSNP_SNP_CT_7992834_Lg7_02619_MAF50_825086_exon2	B	B	B	B	A	A	A	B	B	A	B	A	A	A	A	A	B	B	A	B	A	A	B	B	-	B	A	-	A	B	A	A	B	A	-	A	A	A	B	A	A	A	B	B	-	-	-	B	B	A	A	B	B	A	B	B	A	B	A	B
RosBREEDSNP_SNP_TC_7972719_Lg7_02619_MAF30_8922_exon1	A	B	A	B	A	B	-	-	A	A	B	A	B	B	A	-	-	-	B	-	-	A	B	A	-	A	B	A	B	A	B	A	A	B	-	B	B	A	-	B	A	A	A	B	-	B	-	B	A	-	A	B	A	B	B	A	B	A	A	B

Alignments

Feature Name	Type	Location	Analysis
Chr07	chromosome	Chr07:7571744..7638021.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation