Mdo-HB-07-11

Haplotype Block Overview
Name Mdo-HB-07-11
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 12
Rome Beauty Law 3
Jonafree 10 3
Redfree 12 32
Spartan 10 3
Wagener 3
Worcester Pearmain 12 4
Tsugaru 3
Golden Delicious 3
Fuji 3 7
Empire 10 3
Gala 12 3
Honeycrisp 3 7
Elstar 10 3
Marshall McIntosh 10 3
Cripps Pink 3 4
Granny Smith 3
Jonathan 10 3
Ralls Janet 2 7
Delicious 10 3
Discovery 3 4
Prima 3 4
821 3
Fiesta 10
Ingrid Marie 10 12
Idared 10 3
Esopus Spitzenburg 10 12
Braeburn 10 13
Sansa 10 3
Lodi 10 7
James Grieve 12 7
Cripps Red 3 4
Burgundy 10 13
Akane 10 12
Ambrosia 10 3
Aurora Golden Gala 3
Beacon 3
Ben Davis 10 3 7
Cameo 10 3
Chinook 10 12
Clivia 10 3
Co-op 17 3
Co-op 18 10 3
Dayton 3 4
Delblush 10 3
Delcorf 26 4
Delorgue 10 4
Dolgo 24 3
Geheimrat Dr. Oldenburg 13 3
Duchess of Oldenburg 3 4
Early Cortland 3 7
Empress 3
F2 26829-2-2 3 7
Fantazja 3 4
Fireside 3
Fortune 4 7
Frostbite 3
Ginger Gold 3 7
GMAL 4327 13 3
GMAL 4328 4
GMAL 4329 12 4
GMAL 4332 3 4
Goodland 3 4
Haralson 3
Honeygold 3
Hudson 10 7
Jersey Black 11 13
Jonamac 10 3
Keepsake 3 7
Kerr 3
Lady Williams 3 4
Liberty 13 3
Linda 3 4
Liveland Raspberry 24 3
Longfield 3
Macoun 13 3
Malinda 3
Mantet 18 3
Melba 10
MN 1627 3 4
MN 1628 3
MN 1691 3 4
MN 1706 3
MN 1708 3 4
MN 1760 3
MN 1764 3
MN 1789 3 4
MN 1802 3
MN 1836 3 7
MN 1837 3
MN 1839 3 4
MN 1888 3 4
MN 1899 3
MN 1940 3 4
MN 2016 10 4
AA-44 10 3
Monroe 10 3
Montgomery 10 3
Nicola 12 3
NJ 31 3
NJ 53 10 3
Oriole 3
PRI 14-126 3
PRI 14-510 3 7
PRI 1661-2 10
PRI 54-12 3
PRI 855-102 10
Primula 10
Raritan 3 4
Regent 3
Russian Seedling 12 13
Sawa 10 3
Sciros 3
Sharon 13 3
Silken 3
Wildung 3
Splendour 10 3
State Fair 3
NJ 55 3 7
Co-op 29 3
Sunrise 3
Sweet Sixteen 3 7
Topaz 4 7
Vista Bella 3 4
Wealthy 3
Winesap 10 9
Winter Banana 31 4
Yellow Newtown 10 7
Yellow Transparent 3 7
0407-0001 3
0407-0005 10 3
0407-0006 10 3
0407-0007 3
0407-0008 3
0408-0003 10 3
0408-0004 3
0408-0005 3
0408-0007 10 3
0408-0008 10 3
0408-0010 10 3
0408-0011 10 3
0408-0014 3
0408-0015 10 3
0409-0022 3 7
0409-0024 3
0409-0028 3
0409-0030 3 7
0409-0032 3
0409-0035 3
0409-0036 3 7
0409-0038 3 7
0409-0039 3
0409-0040 3 7
0409-0043 3
0409-0045 3
0410-0002 3
0410-0003 3
0410-0005 3
0410-0006 3
0410-0010 3
0410-0011 3
0410-0012 3
0410-0013 3
0410-0015 3
0410-0017 3
0410-0018 3
0414-0010 10 3
0414-0015 10 7
0414-0017 10 7
0414-0018 10 7
0414-0019 3
0414-0020 10 7
0414-0021 3 7
0415-0001 3 7
0415-0004 10 7
0415-0005 3
0415-0011 10 3
0415-0012 3
0415-0013 3 7
0415-0014 10 3
0415-0016 10 3
0415-0017 10 7
0415-0019 10 3
0415-0020 3 7
0415-0025 3
AE_HCxJonf-145 3 7
AE_HCXJonf-148 3
AE_HCXJonf-162 3 7
AE_HCXJonf-168 3 7
AE_HCxJonf-175 10 7
AE_HCxJonf-183 3 7
AE_HCxJonf-185 3
AE0118-237 3
AE0118-238 3 7
AE0118-239 3
AE0118-240 3
AE0118-243 3
AE0118-244 3
AE0118-245 3
AE0118-246 3
AE0118-249 3
AE0206-159 12 3
AE0206-160 12 3
AE0206-161 12 3
AE0206-162 12 4
AE0206-163 10 4
AE0206-164 10 3
AE0206-165 12 4
AE0206-167 12 3
AE0206-168 12 4
AE0206-169 10 4
AE0206-170 10 4
AE0210-146 12 3
AE0210-147 12 3
AE0210-149 3 4
AE0210-150 12 3
AE0210-151 3 4
AE0210-152 3
AE0210-153 3 4
AE0210-154 12 3
AE0210-157 3 4
AE0210-158 3 4
AE0210-159 3 4
AE0210-162 3 4
AE0210-163 12 3
AE0210-164 3 4
AE0210-165 3 4
AE0210-166 3 4
AE0210-168 3 4
AE0210-169 3 4
AE0210-170 12 3
AE0210-171 12 3
AE0210-172 12 3
AE0210-173 3 4
AE0210-174 12 3
AE0213-175 3 4
AE0213-176 3 4
AE0213-177 3 7
AE0213-178 3 7
AE0213-179 4 7
AE0213-180 3 7
AE0213-181 3 7
AE0213-182 3 4
AE0213-183 3 7
AE0213-186 4 7
AE0213-187 3 7
AE0213-190 3
AE0213-193 3
AE0213-194 3
AE0213-195 3
AE0213-196 4 7
AE0213-197 4 7
AE0213-198 3
AE0213-199 3
AE0213-200 3 4
AE0213-201 4 7
AE0213-202 3 4
AE0213-205 3
AE0213-206 3 7
AE0251-323 12 3
AE0251-325 10 3
AE0251-327 12 3
AE0251-329 12 7
AE0251-330 12 7
AE0251-331 12 3
AE0251-342 10 3
AE0251-343 10 3
AE0406-239 3 7
AE0406-254 3 7
AE0406-258 3
AE0406-259 3
AE0406-263 3 7
AE0406-264 3 7
AE0406-266 3
AE0406-271 3 7
AE0406-274 3 7
AE0406-278 3 7
AE0406-281 3
AE0406-286 3 7
AE0406-288 3 7
AE0406-289 3
AE0406-294 3
AE0406-298 3
Minneiska 4 7
NJ 303955 7
PRI 612-1 10 3
Arlet 10 3
Co-op 39 3
Pinova 10 3
Scired 10 3
Scifresh 13 3
0409-0025 3
0409-0026 3 7
0409-0027 3
0409-0031 3
0409-0033 3
0409-0047 3 7
G-14-050 3 7
G-14-052 10 3
G-14-054 10 7
G-14-055 10 7
G-14-056 10 7
G-14-057 10
G-14-059 3 7
G-14-060 10 7
G-14-061 10 7
G-14-062 3 7
G-14-064 10 3
G-14-065 10 7
G-14-069 10 3
G-14-067 10 3
G-14-068 10
G-14-071 10 3
G-14-073 3 7
G-14-074 10 7
G-14-075 10 3
G-14-076 10
G-14-077 10 7
G-14-078 3 7
G-14-080 10 7
G-09-232 10 7
G-09-233 13 7
G-09-234 10 7
G-09-235 10 3
G-09-236 13 3
G-09-237 13 3
G-09-238 13 3
G-09-239 10 3
G-09-240 10 3
G-09-241 10 3
G-09-242 13 7
G-09-243 10 3
G-09-245 10 7
G-09-246 13 3
G-09-258 13 3
G-09-259 13 3
G-09-260 13 7
G-09-261 10 7
G-09-262 10 3
G-09-263 10 7
G-09-264 10 7
G-09-265 13 3
G-09-266 13 7
G-09-267 10 3
G-09-268 13 7
0408-0021 3
Wijcik McIntosh 10 3
Beauty of Bath 3
Priam 10 3
Northern Spy 3 7
Co-op 15 3
MN 1702 3
WA 2 10 12
WA 5 3
Pitmaston Pineapple 10 3
0411-0011 10 3
0411-0017 10 3
0411-0023 3
AE0250-086 10 7
AE0250-087 12 3
AE0250-089 12 3
AE0250-090 12 7
AE0250-092 12 3
AE0250-093 12 3
AE0250-094 10 3
AE0250-095 10 3
Sonya 10 3
Co-op 38 3
AE0250-096 3
AE0250-327 3 4
Co-op 30 10 3
Jonagrimes 3 4
AE0211-036 7
G-07-039 10
PRI 14-152 3
G-07-041 10 3
BC-8S-27-43 10 12
AE0250-091 13 3
AE0250-097 13 3
AE0250-325 13 3
AE0250-326 3
AE0250-329 3 7
AE0250-333 13 7
AE0250-334 3
AE0250-335 3
AE0250-336 13 7
AE0250-338 13 7
AE0250-341 13 7
AE0211-038 3 4
AE0211-043 3 4
AE0211-045 4 7
AE0211-051 4 7
G-07-010 10 3
G-07-014 10 3
G-07-015 10 3
G-07-019 3
G-07-020 3
G-07-024 10 3
G-07-032 10 3
G-07-033 3
G-07-034 3
G-07-035 3
G-07-044 10 3
AE0211-053 3 4
AE0211-054 4 7
AE0250-088 3 4
AE0250-324 3
AE0250-328 3 7
AE0250-331 3 4
AE0250-332 3 7
AE0250-337 4 7
AE0250-339 3 7
Minnewashta 3 4
Autumn Crisp 10 3
G-14-066 10 3
Lu1-11-010 7
Lu1-11-013 3
Lu1-11-016 3
Lu1-11-017 3 7
Lu1-11-018 7
NJ 90 10 3
Lord Lambourne 4 7
Antonovka GH 12 7
Grimes Golden 3
Kidds Orange Red 10 12
Malus baccata Hansen #2 12 33
Malus baccata Jackii 3
Summerred 30 4
William's Pride 10 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-07-11Apple-RosBREED-3.9K-201979.549.54
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536
RosBREEDSNP_SNP_AG_4127536_Lg7_RosCOS3240_MAF20_1640617_exon2-AB--B--A-AABA------AABAAB--AABBB--
RosBREEDSNP_SNP_AG_4175763_Lg7_RosCOS3240_MAF10_202061_exon1AABBAAAAAAABAAAABBBAAABA-----BBA---
RosBREEDSNP_SNP_CT_4130061_Lg7_RosCOS3240_MAF30_1668323_exon2-BBBBBABA-BB---A-B-BBA----BABBBBB--
RosBREEDSNP_SNP_TC_4120885_Lg7_RosCOS3240_MAF30_MDP0000148163_exon1AAB--BABABBBBA---BBA--BB----AAAABBA
Alignments
Feature NameTypeLocationAnalysis
Chr07 chromosome Chr07:8741186..8796174. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation