Mdo-HB-06-35

Haplotype Block Overview

Name	Mdo-HB-06-35
Species	Malus x domestica
Stock Haplotype	[view all 425]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	10 9
Rome Beauty Law	22 7
Jonafree	7
Redfree	5 7
Spartan	4 7
Wagener	10 3
Worcester Pearmain	3 42
Tsugaru	4 7
Golden Delicious	3 4
Fuji	3 7
Empire	3 4
Gala	4 7
Honeycrisp	3 4
Marshall McIntosh	4 9
Cripps Pink	4 9
Granny Smith	10 9
Jonathan	3 7
Ralls Janet	3 8
Delicious	3 7
Discovery	3 70
Prima	3 7
821	15 16
Fiesta	10
Ingrid Marie	10
Idared	10 3
Esopus Spitzenburg	5 7
Braeburn	3
Sansa	4 42
Lodi	3 5
James Grieve	3 9
Cripps Red	3 9
Burgundy	3 9
Akane	42 7
Aurora Golden Gala	3 4
Beacon	3
Ben Davis	10 19 3 4
Cameo	4 7
Chinook	7
Clivia	10 5
Co-op 17	3
Co-op 18	7
Dayton	3 4 7
Delblush	4
Delorgue	5 7
Dolgo	3
Geheimrat Dr. Oldenburg	10 5
Duchess of Oldenburg	3 5
Early Cortland	19 5 9
Empress	4 7
F2 26829-2-2	22 7
Fantazja	3 4
Fireside	3 7
Fortune	7 9
Frostbite	3 4
Ginger Gold	4 5
GMAL 4327	3 5
GMAL 4328	3
GMAL 4329	3 5
GMAL 4332	4 5
Goodland	3 7
Haralson	3 5
Honeygold	3
Hudson	4 7
Jersey Black	2 5
Jonamac	4 7
Keepsake	3 4
Kerr	3 5
Lady Williams	9
Liberty	7 9
Linda	3 9
Longfield	5
Macoun	5 9
Malinda	3
Mantet	3
Melba	3 4
MN 1628	3
MN 1691	3 7
MN 1706	4 7
MN 1708	3 4
MN 1760	4
MN 1764	4
MN 1789	3
MN 1802	4
MN 1836	3
MN 1837	3 7
MN 1839	3 7
MN 1888	3 7
MN 1899	4 5
MN 1940	3 4
MN 2016	3 4
AA-44	3 7
Monroe	3 7
Montgomery	3 5
Nicola	4 7
NJ 31	7
NJ 53	4
Oriole	3 5
PRI 14-126	3 7
PRI 14-510	4 7
PRI 16-144	7
PRI 1661-2	3 4
PRI 54-12	5 7
PRI 855-102	7
Primula	3 4
Raritan	3 4
Regent	4 5
Russian Seedling	38 63
Sawa	3 4
Sciros	3 7
Sharon	3 4
Silken	3 4
Wildung	3 4
Splendour	3 7
State Fair	3
NJ 55	4 9
Co-op 29	4
Sunrise	4 7
Sweet Sixteen	3
Topaz	4 42
Vista Bella	4
Wealthy	3 5
Winesap	3
Winter Banana	3 4
Yellow Newtown	7
Yellow Transparent	3 5
0407-0001	3 4
0407-0005	3
0407-0006	4
0407-0007	3
0407-0008	3 4
0408-0003	3 4
0408-0004	3 9
0408-0005	4
0408-0007	3 4
0408-0008	3 4
0408-0010	3 9
0408-0011	4 9
0408-0014	4
0408-0015	3 4
0409-0022	4
0409-0024	3
0409-0028	3 4
0409-0030	3 4
0409-0032	4
0409-0035	3
0409-0036	3
0409-0038	3
0409-0039	3 4
0409-0040	3
0409-0043	3 4
0409-0045	3 4
0410-0002	10 4
0410-0003	4 9
0410-0005	10 3
0410-0006	3 9
0410-0010	3 9
0410-0011	3 9
0410-0012	10 3
0410-0013	3 9
0410-0015	10 4
0410-0017	4 9
0410-0018	3 9
0414-0010	3
0414-0015	3 4
0414-0017	3
0414-0018	3 9
0414-0019	4
0414-0020	4
0414-0021	3
0415-0001	4
0415-0004	3 9
0415-0005	3 4
0415-0011	3 9
0415-0012	4 9
0415-0013	3 4
0415-0014	10 3
0415-0016	3 4
0415-0017	3 9
0415-0019	4 9
0415-0020	3 4
0415-0025	3 4
AE_HCxJonf-145	3 7
AE_HCXJonf-148	4 7
AE_HCxJonf-157	3 7
AE_HCXJonf-162	3 7
AE_HCXJonf-168	3 9
AE_HCxJonf-175	4 7
AE_HCxJonf-183	3 7
AE_HCxJonf-185	3 7
AE0118-237	4 5
AE0118-238	4
AE0118-239	3
AE0118-240	3 5
AE0118-243	4 5
AE0118-244	4 5
AE0118-245	4
AE0118-246	4
AE0118-249	3 4
AE0206-159	3 7
AE0206-160	3 7
AE0206-161	3 7
AE0206-162	3 7
AE0206-163	3 7
AE0206-164	3 7
AE0206-165	3 7
AE0206-167	3 7
AE0206-168	3 7
AE0206-169	3 7
AE0206-170	3 7
AE0210-146	5 7
AE0210-147	3 7
AE0210-149	5 7
AE0210-150	3 4
AE0210-151	3 4
AE0210-152	3 4
AE0210-153	3 4
AE0210-154	3 4
AE0210-157	4 5
AE0210-158	5 7
AE0210-159	4 5
AE0210-162	5 7
AE0210-163	5 7
AE0210-164	3 7
AE0210-165	5 7
AE0210-166	3 7
AE0210-168	5 7
AE0210-169	5 7
AE0210-170	5 7
AE0210-171	3 7
AE0210-172	3 7
AE0210-173	4 5
AE0210-174	5 7
AE0213-175	5
AE0213-176	4
AE0213-177	4 5
AE0213-178	4
AE0213-179	4 5
AE0213-180	4 5
AE0213-181	4 5
AE0213-182	4 5
AE0213-183	4
AE0213-186	4
AE0213-187	5
AE0213-190	4
AE0213-193	4 5
AE0213-194	4 5
AE0213-195	4 5
AE0213-196	4
AE0213-197	4 5
AE0213-198	4 9
AE0213-199	5
AE0213-200	4 5
AE0213-201	4 5
AE0213-202	4 5
AE0213-205	4
AE0213-206	4
AE0251-323	3 7
AE0251-325	3 7
AE0251-327	3 7
AE0251-329	3 7
AE0251-330	3 7
AE0251-331	3 7
AE0251-342	3 7
AE0251-343	3 7
AE0406-254	3 4
AE0406-258	3 4
AE0406-259	3 4
AE0406-263	3
AE0406-264	3
AE0406-266	3
AE0406-274	4
AE0406-278	4
AE0406-281	3
AE0406-286	3 4
AE0406-288	3
AE0406-289	3 4
AE0406-294	3 4
AE0406-298	3 4
Minneiska	3 4
NJ 303955	9
PRI 612-1	3 7
Arlet	3 4
Co-op 39	7
Pinova	4 5
Scired	3 4
Scifresh	3 4
0409-0025	3 4
0409-0026	3 4
0409-0027	3 4
0409-0031	4
0409-0033	3 4
0409-0047	3 4
G-14-050	4
G-14-052	4
G-14-054	4 7
G-14-055	4 7
G-14-056	4 7
G-14-057	5 7
G-14-059	4 7
G-14-060	4
G-14-061	4 5
G-14-062	4 7
G-14-064	4 5
G-14-065	4 7
G-14-069	4
G-14-067	4 7
G-14-068	4 5
G-14-071	4
G-14-073	4 5
G-14-074	5 7
G-14-075	4
G-14-076	4 5
G-14-077	4 5
G-14-078	4 5
G-14-080	4
G-09-232	3 4
G-09-233	3 4
G-09-234	3 5
G-09-235	3 5
G-09-236	3 4
G-09-237	3 4
G-09-238	3 4
G-09-239	3 4
G-09-240	3 5
G-09-241	3 5
G-09-242	3 5
G-09-243	3 4
G-09-245	3 4
G-09-246	3 5
G-09-258	3 4
G-09-259	3 5
G-09-260	3 5
G-09-261	3 4
G-09-262	3 4
G-09-263	3 4
G-09-264	3 4
G-09-265	3 4
G-09-266	3 5
G-09-267	3 4
G-09-268	3 4
0408-0021	3 9
Wijcik McIntosh	4 9
Beauty of Bath	12 70
Priam	3 7
Northern Spy	3 7
Co-op 15	3 7
MN 1702	4 7
WA 2	4 7
WA 5	3 7
Pitmaston Pineapple	10 3
0411-0011	4 9
0411-0017	3 4
0411-0023	3 9
AE0250-086	3 7
AE0250-087	3 7
AE0250-089	3 7
AE0250-090	3 7
AE0250-092	3 7
AE0250-093	3 7
AE0250-094	3 7
AE0250-095	3 7
Sonya	3 7
Co-op 38	3
AE0250-096	3 4
AE0250-327	3 7
Co-op 30	4 9
Jonagrimes	3 5
AE0211-036	4 5
G-07-039	3 42
PRI 14-152	3 7
PRI 47-176	22 3
G-07-041	42 7
BC-8S-27-43	7
AE0250-091	3
AE0250-097	3 5
AE0250-325	4 5
AE0250-326	3 5
AE0250-329	3
AE0250-333	4 5
AE0250-334	3 4
AE0250-335	3 5
AE0250-336	3 4
AE0250-338	4 5
AE0250-341	3 5
AE0211-038	3 5
AE0211-043	3 5
AE0211-045	3 5
AE0211-051	3 4
G-07-010	4 9
G-07-014	4 9
G-07-015	10 4
G-07-019	10 4
G-07-020	10 42
G-07-024	10 4
G-07-032	4 9
G-07-033	42 9
G-07-034	42 9
G-07-035	4 9
G-07-044	10 42
AE0211-053	3 4
AE0211-054	3 5
AE0250-088	3 4
AE0250-324	3 4
AE0250-328	3
AE0250-331	3 4
AE0250-332	3
AE0250-337	3 4
AE0250-339	3 4
Minnewashta	3
Autumn Crisp	4 7
G-14-066	5 7
Lu1-11-010	3 9
Lu1-11-013	3 9
Lu1-11-016	7 9
Lu1-11-017	7 9
Lu1-11-018	7 9
NJ 90	4
Lord Lambourne	3 42
Antonovka GH	4
Grimes Golden	3
Kidds Orange Red	10 7
Malus baccata Hansen #2	3
Malus baccata Jackii	3
Summerred	11 5
William's Pride	3 7

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-06-35	Apple-RosBREED-3.9K-2019	6	56.54	56.54

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70
RosBREEDSNP_SNP_CT_28988729_Lg6_165001_MAF20_165001_exon1	B	B	B	B	B	B	A	B	A	B	B	B	B	B	A	-	-	B	-	-	B	B	B	B	B	-	B	B	B	B	B	B	B	B	B	-	B	B	B	A	A	-	-	B	B	-	-	B	B	B	A	A	B	A	-	-	B	-	-	B	B	A	A	B	B	B	-	B	A
RosBREEDSNP_SNP_GA_28837573_Lg6_01574_MAF30_1679148_exon3	B	B	B	A	-	A	B	B	B	B	B	A	B	B	B	A	B	A	-	-	A	-	-	-	B	B	A	B	B	-	-	A	A	B	A	-	B	A	-	A	A	A	B	-	B	B	A	A	B	A	A	B	B	B	-	-	B	A	B	A	A	B	A	B	-	-	A	A	B
RosBREEDSNP_SNP_GA_28843825_Lg6_01574_MAF20_MDP0000238670_exon1	-	B	B	B	B	A	-	B	B	B	B	-	-	B	B	A	B	B	B	A	A	-	B	A	-	B	A	B	B	B	A	B	A	B	A	-	B	-	B	A	A	B	B	B	-	B	A	A	B	-	A	B	-	-	-	-	B	A	B	A	B	B	A	B	-	-	A	B	B
RosBREEDSNP_SNP_GA_28845868_Lg6_01574_MAF20_MDP0000238670_exon6	B	B	B	B	B	A	B	B	B	B	B	A	B	B	B	-	-	B	-	-	B	-	B	A	B	B	A	-	-	-	-	B	-	-	-	-	B	B	B	A	A	B	B	B	B	B	A	A	B	B	A	B	-	-	-	-	-	A	B	A	A	B	B	A	-	-	A	B	B
RosBREEDSNP_SNP_GA_28886565_Lg6_01574_MAF10_817225_exon1	-	B	B	B	B	B	-	A	B	-	-	B	B	B	B	B	B	B	-	-	B	B	B	B	-	B	-	A	B	B	B	B	B	B	B	B	-	-	B	-	B	-	-	A	B	-	-	B	A	B	B	-	B	B	B	B	B	B	B	-	B	-	B	B	B	B	-	-	B
RosBREEDSNP_SNP_TC_28873630_Lg6_01574_MAF50_1647083_exon3	A	A	B	B	-	B	B	A	B	A	B	B	B	-	-	-	-	A	-	-	B	-	B	B	B	B	B	A	A	A	B	-	B	-	-	-	-	B	A	B	B	-	-	A	A	A	B	-	-	B	A	A	B	B	B	A	B	B	A	-	B	-	B	B	B	A	-	B	A

Alignments

Feature Name	Type	Location	Analysis
Chr06	chromosome	Chr06:35767725..36307655.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation