Mdo-HB-15-6

Haplotype Block Overview
Name Mdo-HB-15-6
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 2 6
Rome Beauty Law 2 4
Jonafree 2 6
Redfree 20 4
Spartan 2
Wagener 2 4
Worcester Pearmain 4 6
Tsugaru 3 6
Golden Delicious 2 3
Fuji 2 4
Empire 2
Gala 2 3
Honeycrisp 2 3
Elstar 2 3
Marshall McIntosh 2 4
Cripps Pink 2 3
Granny Smith 3 6
Jonathan 6
Ralls Janet 3 4
Delicious 2 5
Discovery 2 4
Prima 3 4
821 2 5
Fiesta 6
Ingrid Marie 2 6
Idared 2 6
Esopus Spitzenburg 2 6
Braeburn 2 4
Sansa 2 6
Lodi 2
James Grieve 2 6
Cripps Red 2 6
Burgundy 2 6
Akane 6
Ambrosia 2
Aurora Golden Gala 2 3
Beacon 2 4
Ben Davis 2 4 6
Cameo 3 5
Chinook 2
Clivia 2 6
Co-op 17 2 3
Co-op 18 2 6
Dayton 2 3
Delblush 2 4
Delorgue 2 6
Dolgo 2 3
Geheimrat Dr. Oldenburg 2
Duchess of Oldenburg 2
Early Cortland 2 6
Empress 2 4
F2 26829-2-2 2 6
Fantazja 2 4
Fireside 6
Fortune 2 3
Frostbite 2 4
Ginger Gold 2
GMAL 4327 2 4
GMAL 4328 2
GMAL 4329 2 4
GMAL 4332 2
Goodland 2
Haralson 2 6
Honeygold 2 6
Hudson 2 3
Jersey Black 2 4
Jolana 2
Jonamac 4 6
Keepsake 2 3
Kerr 3 6
Lady Williams 3 6
Liberty 2
Linda 2 4
Longfield 2 6
Macoun 2
Malinda 4 6
Melba 2 4
MN 1627 2 3
MN 1628 3 4
MN 1691 2 6
MN 1706 2 4
MN 1708 2 3
MN 1760 17
MN 1764 2 4
MN 1789 3 6
MN 1802 6
MN 1836 2 3
MN 1837 2
MN 1839 3 6
MN 1888 2
MN 1899 2 6
MN 1940 2 4
MN 2016 2
AA-44 2 6
Monroe 4 6
Montgomery 2
Nicola 2 3
NJ 31 2
NJ 53 2 4
OR38T16 2
Oriole 2
PRI 14-126 2
PRI 14-510 2 3
PRI 1661-2 2
PRI 855-102 6
Primula 2 4
Raritan 2 4
Regent 2
Russian Seedling 2
Sawa 2
Sciros 2 3
Sharon 2 4
Silken 2
Wildung 4 6
Splendour 2 3
State Fair 2
NJ 55 2 6
Co-op 29 2 3
Sunrise 2 3
Sweet Sixteen 3 4
Topaz 6
Vanda 2 6
Vista Bella 2
Wealthy 2 6
Winesap 2 4
Winter Banana 2 4
Yellow Newtown 20 4
Yellow Transparent 2
0407-0001 2
0407-0005 3
0407-0006 2 3
0407-0007 2
0407-0008 3
0408-0003 2
0408-0004 2 3
0408-0005 2 3
0408-0007 3 6
0408-0008 2
0408-0010 2 6
0408-0011 2 6
0408-0014 2 3
0408-0015 3 6
0409-0022 2 3
0409-0024 3
0409-0028 2
0409-0030 2 3
0409-0032 3
0409-0035 2 3
0409-0036 3
0409-0038 3
0409-0039 2
0409-0040 2 3
0409-0043 3
0409-0045 2 3
0410-0002 2 3
0410-0003 3
0410-0005 3
0410-0006 3
0410-0010 2 3
0410-0011 2 3
0410-0012 2 3
0410-0013 3
0410-0015 2 3
0410-0017 2 6
0410-0018 3 6
0414-0010 2
0414-0015 3
0414-0017 2 3
0414-0018 3 6
0414-0019 3
0414-0020 2 3
0414-0021 3
0415-0001 2
0415-0004 2
0415-0005 3 6
0415-0011 3 6
0415-0012 2 6
0415-0013 2
0415-0014 2 3
0415-0016 2 6
0415-0017 2
0415-0019 2 6
0415-0020 2 3
0415-0025 2 6
AE_HCxJonf-145 2 3
AE_HCXJonf-148 2
AE_HCxJonf-157 3 6
AE_HCXJonf-162 2 3
AE_HCXJonf-168 2 3
AE_HCxJonf-175 2 3
AE_HCxJonf-183 2 6
AE_HCxJonf-185 2 6
AE0118-237 2 3
AE0118-238 2 3
AE0118-239 2 3
AE0118-240 2 3
AE0118-243 2 3
AE0118-244 2 3
AE0118-245 2
AE0118-246 2
AE0118-249 2 3
AE0206-159 2
AE0206-160 2
AE0206-161 2
AE0206-162 2 3
AE0206-163 2
AE0206-164 2 3
AE0206-165 2
AE0206-167 2 3
AE0206-168 2 3
AE0206-169 2
AE0206-170 2
AE0210-146 2 3
AE0210-147 2 4
AE0210-149 2 3
AE0210-150 2
AE0210-151 2 4
AE0210-152 2
AE0210-153 2 3
AE0210-154 3 4
AE0210-157 2 4
AE0210-158 2
AE0210-159 2
AE0210-162 2
AE0210-163 2 3
AE0210-164 2
AE0210-165 2 4
AE0210-166 2
AE0210-168 2 3
AE0210-169 2 3
AE0210-170 2 4
AE0210-171 2
AE0210-172 3 4
AE0210-173 2 4
AE0210-174 2 4
AE0213-175 2
AE0213-176 2
AE0213-177 2
AE0213-178 2
AE0213-179 2
AE0213-180 2
AE0213-181 2
AE0213-182 2
AE0213-183 2
AE0213-186 2
AE0213-187 2
AE0213-190 2
AE0213-193 2
AE0213-194 2
AE0213-195 2
AE0213-196 2
AE0213-197 2
AE0213-198 2
AE0213-199 2
AE0213-200 2
AE0213-201 2
AE0213-202 2
AE0213-205 2
AE0213-206 2
AE0251-323 2 3
AE0251-327 3 4
AE0251-329 2 3
AE0251-330 2 3
AE0251-331 2 4
AE0251-342 3 4
AE0251-343 2 3
AE0406-239 2 3
AE0406-254 2 3
AE0406-258 2 3
AE0406-259 2 3
AE0406-263 2 3
AE0406-264 2
AE0406-266 2
AE0406-271 2 6
AE0406-274 2
AE0406-278 2 3
AE0406-281 2 3
AE0406-286 2 3
AE0406-288 2 3
AE0406-289 2
AE0406-294 2
AE0406-298 2 3
Minneiska 2
PRI 612-1 2 5
Arlet 2 3
Co-op 39 4 7
Pinova 2
Scired 2 3
Scifresh 2 4
0409-0025 2 3
0409-0026 2
0409-0027 2 3
0409-0031 3
0409-0033 2 3
0409-0047 2 3
G-14-050 2 4
G-14-052 2 4
G-14-054 2 4
G-14-055 2 4
G-14-056 2 4
G-14-057 2 4
G-14-059 2 4
G-14-060 2 4
G-14-061 2 4
G-14-062 2 4
G-14-064 2 4
G-14-065 2 4
G-14-069 2 4
G-14-067 2 4
G-14-068 2
G-14-071 2 4
G-14-073 2 4
G-14-074 2
G-14-075 2 4
G-14-076 2 4
G-14-077 2 4
G-14-078 2
G-14-080 2
G-09-232 2 4
G-09-233 2
G-09-234 2 4
G-09-235 2
G-09-236 2 4
G-09-237 2
G-09-238 2
G-09-239 2 4
G-09-240 2 4
G-09-241 2 4
G-09-242 2
G-09-243 2 4
G-09-245 2
G-09-246 2 4
G-09-258 2
G-09-259 2
G-09-260 2
G-09-261 2 4
G-09-262 2
G-09-263 2 4
G-09-264 2 4
G-09-265 2
G-09-266 2 4
G-09-267 2 4
G-09-268 2 4
0408-0021 2
Wijcik McIntosh 2 4
Beauty of Bath 2 6
Priam 2 6
Northern Spy 2 3
Co-op 15 4 5
MN 1702 4 6
WA 2 2 3
WA 5 3 4
Pitmaston Pineapple 2
0411-0011 2
0411-0017 2 3
0411-0023 3 6
AE0250-086 3 4
AE0250-087 3
AE0250-089 2 4
AE0250-090 2 3
AE0250-092 2 4
AE0250-093 2 3
AE0250-094 3
AE0250-095 3 4
Sonya 2 3
Co-op 38 2 3
AE0250-096 3 6
AE0250-327 3 6
Co-op 30 2 6
Jonagrimes 2
AE0211-036 2 4
G-07-039 3 6
PRI 14-152 2 3
PRI 47-176 2 6
G-07-041 2 6
BC-8S-27-43 2 3
AE0250-091 3 4
AE0250-097 2 3
AE0250-325 2
AE0250-326 2 4
AE0250-329 2 4
AE0250-333 2 4
AE0250-334 2 3
AE0250-335 3 4
AE0250-336 2 4
AE0250-338 3 4
AE0250-341 2 3
AE0211-038 2
AE0211-043 2
AE0211-045 2
AE0211-051 2
G-07-010 6
G-07-014 2 3
G-07-015 2 6
G-07-019 3 6
G-07-020 6
G-07-024 6
G-07-032 3 6
G-07-033 3 6
G-07-034 2 6
G-07-035 6
G-07-044 2 3
AE0211-053 2
AE0211-054 2
AE0250-088 2 3
AE0250-324 2
AE0250-328 2 3
AE0250-331 2 3
AE0250-332 2
AE0250-337 2
AE0250-339 2 3
Minnewashta 2
Autumn Crisp 3 4
G-14-066 2
Lu1-11-010 4 6
Lu1-11-013 4
Lu1-11-016 2 6
Lu1-11-017 4
Lu1-11-018 2 4
NJ 90 2
Lord Lambourne 6
Antonovka GH 2 4
Grimes Golden 2
Kidds Orange Red 2 6
Malus baccata Hansen #2 2 3
Malus baccata Jackii 3
Summerred 2 4
William's Pride 2 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-15-6Apple-RosBREED-3.9K-20191510.7210.72
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920
GDsnp00694BABABA-B--BB-BABA-B
RosBREEDSNP_SNP_CT_976750_Lg15_00694_MAF50_598335_exon1BAAAAB--BAAB----AAB
RosBREEDSNP_SNP_TC_1002905_Lg15_00694_MAF40_MDP0000241749_exon7AAABBAA-AA--BBAA-BB
Alignments
Feature NameTypeLocationAnalysis
Chr15 chromosome Chr15:1... Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation