Mdo-HB-05-53

Haplotype Block Overview
Name Mdo-HB-05-53
Species Malus x domestica
Stock Haplotype [view all 426]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 6
Rome Beauty Law 5 9
Jonafree 5 9
Redfree 6 7
Spartan 4 5
Wagener 4 5
Worcester Pearmain 5 6
Tsugaru 4 9
Golden Delicious 4 5
Fuji 4 6
Empire 5
Gala 5 6
Honeycrisp 4 6
Elstar 4 6
Marshall McIntosh 5 6
Cripps Pink 4 5
Granny Smith 4 6
Jonathan 5 9
Ralls Janet 6 8
Delicious 4 5
Prima 4 6
821 7
Fiesta 4 6
Ingrid Marie 6
Idared 4 5
Esopus Spitzenburg 6 9
Braeburn 5 6
Sansa 6
Lodi 5 6
James Grieve 6 9
Cripps Red 5
Burgundy 5 6
Akane 6 9
Ambrosia 4 5
Aurora Golden Gala 4 6
Beacon 6 9
Ben Davis 4 6
Cameo 4 5
Chinook 5 6
Clivia 6
Co-op 17 4 5
Co-op 18 5 9
Dayton 5 6
Delblush 4 5
Delorgue 5 6
Dolgo 2 7
Geheimrat Dr. Oldenburg 6
Duchess of Oldenburg 5 6
Early Cortland 5 6
Empress 5
F2 26829-2-2 4 7
Fantazja 6 9
Fireside 5 6
Fortune 6
Frostbite 5 7
Ginger Gold 4 6
GMAL 4327 5 6
GMAL 4328 6 9
GMAL 4329 5 6
GMAL 4332 6 9
Goodland 5 9
Haralson 5 9
Honeygold 5 9
Hudson 4 5
Jersey Black 6
Jonamac 5
Keepsake 4 7
Kerr 5 7
Lady Williams 5 6
Liberty 5 7
Linda 5 9
Longfield 6
Macoun 5 6
Malinda 5 9
Mantet 5
Melba 5 6
Melrose 4 9
MN 1627 4 6
MN 1628 4 5
MN 1691 5 9
MN 1706 7
MN 1708 4
MN 1760 5 9
MN 1764 5
MN 1789 5 6
MN 1802 5 9
MN 1836 5 7
MN 1837 4 5
MN 1839 6 9
MN 1888 4 9
MN 1899 5 9
MN 1940 5
MN 2016 4 9
AA-44 5
Monroe 5 9
Montgomery 6
Nicola 5
NJ 31 9
NJ 53 5
Oriole 5
PRI 14-126 4
PRI 14-510 4 5
PRI 1661-2 4 5
PRI 855-102 5
Primula 4 6
Raritan 24 7
Regent 5 9
Russian Seedling 6
Sawa 6 9
Sciros 5
Sharon 5 6
Silken 5
Wildung 5 6
Splendour 4 5
State Fair 5
NJ 55 4 6
Co-op 29 5 7
Sunrise 5
Sweet Sixteen 4 7
Topaz 4 6
Vista Bella 5
Wealthy 5 9
Winesap 4
Winter Banana 6
Yellow Newtown 24 25
Yellow Transparent 4 5
0407-0001 4 6
0407-0005 4
0407-0006 4 6
0407-0007 4 6
0407-0008 4 6
0408-0003 6
0408-0004 4 6
0408-0005 4 6
0408-0007 4 6
0408-0008 4 6
0408-0010 4 6
0408-0011 4 6
0408-0014 6
0408-0015 4
0409-0022 6
0409-0024 4 6
0409-0028 4
0409-0030 4 6
0409-0032 4 6
0409-0035 4 6
0409-0036 4 6
0409-0038 4 6
0409-0039 4
0409-0040 6
0409-0043 6
0409-0045 6
0410-0002 4 6
0410-0003 4 6
0410-0005 6
0410-0006 6
0410-0010 4
0410-0011 4
0410-0012 4
0410-0013 4 6
0410-0015 6
0410-0017 6
0410-0018 4 6
0414-0010 4
0414-0015 4 6
0414-0017 4 6
0414-0018 4 6
0414-0019 4
0414-0020 4
0414-0021 4 6
0415-0001 4
0415-0004 4
0415-0005 4
0415-0011 6
0415-0012 4
0415-0013 4 6
0415-0014 4
0415-0016 6
0415-0017 4 6
0415-0019 4 6
0415-0020 4 6
0415-0025 4 6
AE_HCxJonf-145 4 9
AE_HCXJonf-148 4 9
AE_HCXJonf-162 4 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4 5
AE_HCxJonf-183 6 9
AE_HCxJonf-185 5 6
AE0118-237 6 9
AE0118-238 6 9
AE0118-239 6 9
AE0118-240 6 9
AE0118-243 5 6
AE0118-244 4 5
AE0118-245 6 9
AE0118-246 6 9
AE0118-249 4 5
AE0206-159 6 9
AE0206-160 6 9
AE0206-161 5 9
AE0206-162 5
AE0206-163 5 9
AE0206-164 5 6
AE0206-165 5 9
AE0206-167 6 9
AE0206-168 5 6
AE0206-169 5 9
AE0206-170 5 6
AE0210-146 5
AE0210-147 5 6
AE0210-149 5 6
AE0210-150 5 6
AE0210-151 5 6
AE0210-152 5 9
AE0210-153 5
AE0210-154 5 6
AE0210-157 5
AE0210-158 5
AE0210-159 5 6
AE0210-162 5
AE0210-163 5 6
AE0210-164 5
AE0210-165 5
AE0210-166 5
AE0210-168 5 6
AE0210-169 5 6
AE0210-170 5 6
AE0210-171 5 6
AE0210-172 5 6
AE0210-173 5 6
AE0210-174 5
AE0213-175 6 9
AE0213-176 4 6
AE0213-177 6
AE0213-178 4 6
AE0213-179 6 9
AE0213-180 4 9
AE0213-181 6
AE0213-182 4 9
AE0213-183 6 9
AE0213-186 4 9
AE0213-187 6
AE0213-190 4 6
AE0213-193 4 6
AE0213-194 4 6
AE0213-195 6
AE0213-196 4 9
AE0213-197 6 9
AE0213-198 4 5
AE0213-199 6 9
AE0213-200 6
AE0213-201 6 9
AE0213-202 6 9
AE0213-205 4 6
AE0213-206 6 9
AE0251-323 4 6
AE0251-325 4 5
AE0251-327 5 7
AE0251-329 6 7
AE0251-330 4 5
AE0251-331 5 7
AE0251-342 4 6
AE0251-343 4 6
AE0406-239 5 6
AE0406-254 5 6
AE0406-258 5 6
AE0406-259 5 6
AE0406-263 5 6
AE0406-264 4 5
AE0406-266 4 5
AE0406-271 4 9
AE0406-274 4 5
AE0406-278 5 6
AE0406-281 4 5
AE0406-286 5 6
AE0406-288 4 5
AE0406-289 5 6
AE0406-294 4 5
AE0406-298 5 6
Minneiska 4 5
NJ 303955 6
PRI 612-1 4
Arlet 4
Co-op 39 5
Pinova 5 6
Scired 5 6
Scifresh 6
0409-0025 6
0409-0026 6
0409-0027 4
0409-0031 4 6
0409-0033 4 6
0409-0047 4
G-14-050 5 6
G-14-052 5
G-14-054 5 6
G-14-055 5 6
G-14-056 5
G-14-057 5
G-14-059 5 6
G-14-060 5
G-14-061 6
G-14-062 5 6
G-14-064 6
G-14-065 5 6
G-14-069 5 6
G-14-067 5
G-14-068 6
G-14-071 5 6
G-14-073 5 6
G-14-074 5 6
G-14-075 6
G-14-076 6
G-14-077 5
G-14-078 5 6
G-14-080 5 6
G-09-232 4 6
G-09-233 6
G-09-234 6
G-09-235 4 6
G-09-236 4 5
G-09-237 4 5
G-09-238 6
G-09-239 6
G-09-240 4 5
G-09-241 4 5
G-09-242 5 6
G-09-243 6
G-09-245 6
G-09-246 4 5
G-09-258 6
G-09-259 5 6
G-09-260 4 6
G-09-261 5 6
G-09-262 4 5
G-09-263 6
G-09-264 4 5
G-09-265 5 6
G-09-266 5 6
G-09-267 4 6
G-09-268 5 6
0408-0021 4 6
Wijcik McIntosh 5 6
Beauty of Bath 5
Priam 4
Northern Spy 4
Co-op 15 4 9
MN 1702 5 7
WA 2 4 6
WA 5 4 5
Pitmaston Pineapple 4 6
0411-0011 4
0411-0017 4 6
0411-0023 4 6
AE0250-086 5 7
AE0250-087 6 7
AE0250-089 5 7
AE0250-090 6 7
AE0250-092 5 7
AE0250-093 4 6
AE0250-094 6 7
AE0250-095 6 7
Sonya 5
Co-op 38 4 5
AE0250-096 5
AE0250-327 5
Co-op 30 4 6
Jonagrimes 2 5
AE0211-036 4 6
G-07-039 5 6
PRI 14-152 4
G-07-041 6
BC-8S-27-43 5 6
AE0250-091 4 5
AE0250-097 5 6
AE0250-325 6
AE0250-326 4 5
AE0250-329 6
AE0250-333 5 6
AE0250-334 5 6
AE0250-335 4 5
AE0250-336 4 5
AE0250-338 4 6
AE0250-341 4 6
AE0211-038 4 9
AE0211-043 4 6
AE0211-045 6
AE0211-051 4 9
G-07-010 6
G-07-014 6
G-07-015 6
G-07-019 6
G-07-020 6
G-07-024 4 6
G-07-032 4 6
G-07-033 4 6
G-07-034 4 6
G-07-035 6
G-07-044 4 6
AE0211-053 5 6
AE0211-054 4 9
AE0250-088 6 9
AE0250-324 5 6
AE0250-328 4 5
AE0250-331 4 5
AE0250-332 4 5
AE0250-337 5 6
AE0250-339 6 9
Minnewashta 5 9
Autumn Crisp 5
G-14-066 5 6
Lu1-11-010 4 6
Lu1-11-013 4
Lu1-11-016 5 6
Lu1-11-017 4 6
Lu1-11-018 4
NJ 90 5 9
Lord Lambourne 5 6
Antonovka GH 5
Grimes Golden 2 4
Kidds Orange Red 4 6
Malus baccata Hansen #2 5 7
Malus baccata Jackii 7
Summerred 6
William's Pride 4 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-05-53Apple-RosBREED-3.9K-2019500
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728
GDsnp02674BAABBBBBB----B--BA-BABBA-AB
RosBREEDSNP_SNP_CA_37473253_Lg5_02674_MAF20_488977_exon1--BBBB-A-BBB----ABAABBBBBBB
RosBREEDSNP_SNP_CT_37469684_Lg5_02674_MAF40_324963_exon1ABBBABBBBB-BB-AB--BAAAABABB
RosBREEDSNP_SNP_GT_37429382_Lg5_02674_MAF30_475767_exon2ABBBAABBAB----AB--BAA-BAA--
Alignments
Feature NameTypeLocationAnalysis
Chr05 chromosome Chr05:185594..227394. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation