Mdo-HB-11-42

Haplotype Block Overview
Name Mdo-HB-11-42
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 4
Rome Beauty Law 6
Jonafree 4 6
Redfree 4 7
Spartan 4 8
Wagener 6 7
Worcester Pearmain 6 8
Tsugaru 3 4
Golden Delicious 3 4
Fuji 6 8
Empire 10 6
Gala 4
Honeycrisp 4
Elstar 4
Marshall McIntosh 10 4
Cripps Pink 4
Granny Smith 10 6
Jonathan 4 8
Ralls Janet 6
Delicious 6 8
Discovery 4 6
Prima 4 6
821 13
Fiesta 4 6
Ingrid Marie 4 6
Idared 6 8
Esopus Spitzenburg 7 8
Braeburn 6
Sansa 4 8
Lodi 6
James Grieve 4
Cripps Red 10 4
Burgundy 6
Akane 8
Ambrosia 3 8
Aurora Golden Gala 4 6
Beacon 4 5
Ben Davis 4 7 8
Cameo 3 6
Chinook 3 4
Clivia 3 4
Co-op 17 6
Co-op 18 36 5
Dayton 4 6
Delblush 3 4
Delorgue 3 8
Dolgo 5
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 4 5
Early Cortland 4 6 7
Empress 4 6
F2 26829-2-2 6
Fantazja 4 6
Fireside 4 7
Fortune 4
Frostbite 4
Ginger Gold 4 6
GMAL 4327 6 7
GMAL 4328 4 7
GMAL 4329 7 8
GMAL 4332 5 6
Goodland 23 5
Haralson 4 5
Honeygold 4
Hudson 6 7
Jersey Black 25 6
Jonamac 4
Keepsake 4 7
Kerr 4 5
Lady Williams 10 4
Linda 4 6
Liveland Raspberry 4 6
Longfield 3 7
Macoun 4 6
Malinda 4 5
Mantet 4
Melba 4
Melrose 4 8
MN 1627 3 4
MN 1628 4 6
MN 1691 23 7
MN 1706 36 5
MN 1708 4
MN 1760 4 5
MN 1764 4 6
MN 1789 23 3
MN 1802 4
MN 1836 4
MN 1837 23 4
MN 1839 4
MN 1888 23 3
MN 1899 4
MN 1940 23 6
MN 2016 5 8
AA-44 4
Monroe 6 8
Montgomery 6 7
Nicola 4 6
NJ 31 6
NJ 53 6
Oriole 4 6
PRI 14-126 4 6
PRI 14-510 6
PRI 1661-2 4 8
PRI 54-12 4 6
PRI 855-102 4
Primula 4
Raritan 5 6
Regent 4
Russian Seedling 5 7
Sawa 4 6
Sciros 4 6
Sharon 10 4
Silken 4
Wildung 4 7
Splendour 3 6
State Fair 4 5
NJ 55 4 7
Co-op 29 3 6
Sunrise 4
Sweet Sixteen 4 6
Topaz 4 8
Vista Bella 4 6
Wealthy 4
Winesap 4 6
Winter Banana 36 5
Yellow Newtown 4 6
Yellow Transparent 5 6
0407-0001 3 4
0407-0005 4 8
0407-0006 6 8
0407-0007 4 8
0407-0008 6 8
0408-0003 10 6
0408-0004 10 4
0408-0005 4 8
0408-0007 10 4
0408-0008 6 8
0408-0010 10 4
0408-0011 6 8
0408-0014 4 8
0408-0015 4 8
0409-0022 4
0409-0024 4
0409-0028 4
0409-0030 4 6
0409-0032 4 6
0409-0035 4
0409-0036 4 6
0409-0038 4
0409-0039 4
0409-0040 4 6
0409-0043 4
0409-0045 4
0410-0002 10 6
0410-0003 10 6
0410-0005 4 6
0410-0006 4 6
0410-0010 10 4
0410-0011 10 6
0410-0012 6
0410-0013 10 6
0410-0015 6
0410-0017 10 4
0410-0018 4 6
0414-0010 3 4
0414-0015 3 4
0414-0017 4 8
0414-0018 10 4
0414-0019 4 8
0414-0020 4 8
0414-0021 3 4
0415-0001 4 8
0415-0004 4 8
0415-0005 10 4
0415-0011 10 4
0415-0012 4 8
0415-0013 4 8
0415-0014 4
0415-0016 4 8
0415-0017 10 4
0415-0019 4 8
0415-0020 4 8
0415-0025 10 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4
AE_HCxJonf-175 4 6
AE_HCxJonf-183 4
AE_HCxJonf-185 4 6
AE0118-237 4
AE0118-238 4
AE0118-239 4
AE0118-240 4
AE0118-243 4
AE0118-244 4
AE0118-245 4
AE0118-246 4
AE0118-249 4
AE0206-159 23 4
AE0206-160 23 4
AE0206-161 4 5
AE0206-162 23 6
AE0206-163 4 5
AE0206-164 23 6
AE0206-165 23 4
AE0206-167 23 6
AE0206-168 23 4
AE0206-169 5 6
AE0206-170 5 6
AE0210-146 4 8
AE0210-147 4 8
AE0210-149 4 8
AE0210-150 4 8
AE0210-151 4 8
AE0210-152 23 4
AE0210-153 4 7
AE0210-154 4 8
AE0210-157 4 8
AE0210-158 4 7
AE0210-159 4 7
AE0210-162 4 7
AE0210-163 4 7
AE0210-164 4 8
AE0210-165 4 8
AE0210-166 4 8
AE0210-168 4 7
AE0210-169 4 7
AE0210-170 4 8
AE0210-171 4 7
AE0210-172 4 8
AE0210-173 4 8
AE0210-174 4 8
AE0213-175 6
AE0213-176 4 6
AE0213-177 4 5
AE0213-178 6
AE0213-179 4 5
AE0213-180 4 6
AE0213-181 4 5
AE0213-182 5 6
AE0213-183 5 6
AE0213-186 5 6
AE0213-187 4 6
AE0213-190 5 6
AE0213-193 6
AE0213-194 6
AE0213-195 5 6
AE0213-196 4 5
AE0213-197 5 6
AE0213-198 4 5
AE0213-199 6
AE0213-200 5 6
AE0213-201 4 5
AE0213-202 6
AE0213-205 4 6
AE0213-206 5 6
AE0251-323 4
AE0251-325 4
AE0251-327 4 6
AE0251-329 4 6
AE0251-330 4 6
AE0251-331 6
AE0251-342 4 6
AE0251-343 6
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 4
AE0406-264 4
AE0406-266 4
AE0406-271 4
AE0406-274 4
AE0406-278 4
AE0406-281 4
AE0406-286 4
AE0406-288 4
AE0406-289 4
AE0406-294 4
AE0406-298 4
Minneiska 23 4
NJ 303955 7
PRI 612-1 4 8
Arlet 3 8
Co-op 39 36 5
Pinova 3 4
Scired 3 4
Scifresh 4 6
0409-0025 4
0409-0026 4 6
0409-0027 4 6
0409-0031 4
0409-0033 4
0409-0047 4 6
G-14-050 4 6
G-14-052 3 6
G-14-054 3 6
G-14-055 3 6
G-14-056 4 6
G-14-057 3 6
G-14-059 3 6
G-14-060 4 6
G-14-061 4 6
G-14-062 4 6
G-14-064 4 6
G-14-065 4 6
G-14-069 4 6
G-14-067 3 6
G-14-068 4 6
G-14-071 3 6
G-14-073 4 6
G-14-074 4 6
G-14-075 3 6
G-14-076 4 6
G-14-077 4 6
G-14-078 4 6
G-14-080 3 6
G-09-232 6
G-09-233 4 6
G-09-234 6
G-09-235 4 6
G-09-236 6
G-09-237 4 6
G-09-238 4 6
G-09-239 6
G-09-240 4 6
G-09-241 6
G-09-242 6
G-09-243 6
G-09-245 6
G-09-246 4 6
G-09-258 6
G-09-259 4 6
G-09-260 6
G-09-261 4 6
G-09-262 6
G-09-263 4 6
G-09-264 4 6
G-09-265 4 6
G-09-266 6
G-09-267 4 6
G-09-268 4 6
0408-0021 4 8
Wijcik McIntosh 41 5
Beauty of Bath 4
Priam 4
Northern Spy 6 7
Co-op 15 4 8
MN 1702 4
WA 2 4 6
WA 5 4 6
Pitmaston Pineapple 6 8
0411-0011 8
0411-0017 10 8
0411-0023 10 8
AE0250-086 6
AE0250-087 4 6
AE0250-089 4 6
AE0250-090 4 6
AE0250-092 4
AE0250-093 4
AE0250-094 4
AE0250-095 4 6
Sonya 4 6
Co-op 38 4 6
AE0250-096 23 6
AE0250-327 23 4
Co-op 30 10 8
Jonagrimes 3 5
AE0211-036 6
G-07-039 4 8
G-07-041 4 8
BC-8S-27-43 4 6
AE0250-091 4 6
AE0250-097 4 6
AE0250-325 4 7
AE0250-326 4 7
AE0250-329 4 7
AE0250-333 4 6
AE0250-334 4 7
AE0250-335 4 6
AE0250-336 4 7
AE0250-338 4 7
AE0250-341 4 6
AE0211-038 4 6
AE0211-043 4 6
AE0211-045 4
AE0211-051 4 6
G-07-010 4 6
G-07-014 6 8
G-07-015 10 8
G-07-019 10 4
G-07-020 10 4
G-07-024 4 6
G-07-032 4 6
G-07-033 10 4
G-07-034 4 6
G-07-035 4 6
G-07-044 10 4
AE0211-053 4 5
AE0211-054 4 5
AE0250-088 4 5
AE0250-324 4 5
AE0250-328 4 5
AE0250-331 23 4
AE0250-332 4 5
AE0250-337 4 5
AE0250-339 23 4
Minnewashta 23 5
Autumn Crisp 4 6
G-14-066 3 6
Lu1-11-010 7 8
Lu1-11-013 10 6
Lu1-11-016 10 8
Lu1-11-017 7 8
Lu1-11-018 6 7
NJ 90 6 8
Lord Lambourne 4 6
Antonovka GH 4 42
Grimes Golden 3
Kidds Orange Red 4 8
Malus baccata Hansen #2 4 8
Malus baccata Jackii 4 5
Summerred 45 6
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-11-42Apple-RosBREED-3.9K-20191156.756.7
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647
GDsnp02910-BAAAAA-A-----AA-A--AA---AAA-BA-AAAABAAAB---AA
RosBREEDSNP_SNP_CT_34233392_Lg11_02910_MAF20_546072_exon1-BBBBBA-BBBB--BB-BBB-AB--BBBAB---AB--ABBBBABBA
RosBREEDSNP_SNP_GA_34210655_Lg11_02910_MAF40_MDP0000288220_exon1BBBBABBAAAABBABAA-B--A-BA---BBBBB-AABABABABABB
RosBREEDSNP_SNP_GA_34213532_Lg11_02910_MAF50_MDP0000319440_exon3BBBAAABAAA------AABA-A-AA-AAB-AAB-BABABBAABABB
RosBREEDSNP_SNP_GA_34224444_Lg11_02910_MAF40_1628616_exon3BBBBAABABAAB--BAB-BA-BB---ABBBBBB-AABAABB--B--
Alignments
Feature NameTypeLocationAnalysis
Chr11 chromosome Chr11:37622428..37653193. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation