Mdo-HB-11-29a

Haplotype Block Overview

Name	Mdo-HB-11-29a
Species	Malus x domestica
Stock Haplotype	[view all 427]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	4 6
Rome Beauty Law	6
Jonafree	4 6
Redfree	21 7
Spartan	6 8
Wagener	5 6
Worcester Pearmain	4 6
Tsugaru	4 6
Golden Delicious	4 5
Fuji	6 8
Empire	6
Gala	4 5
Honeycrisp	5 6
Elstar	4 5
Marshall McIntosh	6
Cripps Pink	5
Granny Smith	5
Jonathan	4 6
Ralls Janet	6
Delicious	6 8
Discovery	6 8
Prima	5 6
821	6
Fiesta	6
Ingrid Marie	4 5
Idared	4 6
Esopus Spitzenburg	4 5
Braeburn	6
Sansa	4
Lodi	5 8
James Grieve	4 6
Cripps Red	5
Burgundy	6
Akane	4
Ambrosia	4 8
Aurora Golden Gala	4 6
Beacon	5
Ben Davis	5 7 9
Cameo	4 8
Chinook	4 5
Clivia	6
Co-op 17	6
Co-op 18	21 7
Dayton	4 6
Delblush	4 5
Delorgue	4
Dolgo	5
Geheimrat Dr. Oldenburg	4 6
Duchess of Oldenburg	5
Early Cortland	5 6
Empress	6
F2 26829-2-2	6
Fantazja	6 8
Fireside	5 6
Fortune	5 6
Frostbite	5 6
Ginger Gold	4 5
GMAL 4327	5 8
GMAL 4328	5 8
GMAL 4329	6 7
GMAL 4332	5 6
Goodland	4 5
Haralson	5 6
Honeygold	4 5
Hudson	6
Jersey Black	6
Jonamac	6
Keepsake	6
Kerr	5 6
Lady Williams	5
Liberty	6
Linda	6 8
Longfield	12 21
Macoun	6
Malinda	5 8
Melba	5 6
MN 1627	5
MN 1628	5 6
MN 1691	5 6
MN 1706	5 6
MN 1708	5 6
MN 1760	5 6
MN 1764	5
MN 1789	5
MN 1802	4 5
MN 1836	5 6
MN 1837	5
MN 1839	5
MN 1888	5 6
MN 1899	5 6
MN 1940	5 6
MN 2016	4 5
AA-44	4 6
Monroe	4 6
Montgomery	5 6
Nicola	5 6
NJ 31	6
NJ 53	6
Oriole	5
PCF-3-120	4 6
PRI 14-126	5 6
PRI 14-510	5 6
PRI 1661-2	6 8
PRI 855-102	4
Primula	6
Raritan	5
Regent	6
Russian Seedling	5
Sawa	6
Sciros	5 6
Sharon	5 6
Silken	4 8
Wildung	5 6
Splendour	4 6
State Fair	5
NJ 55	5
Co-op 29	4 6
Sunrise	4 8
Sweet Sixteen	5 6
Topaz	6
Vista Bella	6
Wealthy	5 6
Winesap	6 7
Winter Banana	5 6
Yellow Newtown	21 7
Yellow Transparent	5 8
0407-0001	4
0407-0005	4 6
0407-0006	4
0407-0007	4 6
0407-0008	4 6
0408-0003	6
0408-0004	4 6
0408-0005	4 8
0408-0007	4 6
0408-0008	6 8
0408-0010	4 6
0408-0011	6 8
0408-0014	6 8
0408-0015	4 8
0409-0022	4 5
0409-0024	6
0409-0028	4 6
0409-0030	4 5
0409-0032	4 5
0409-0035	4 6
0409-0036	4 5
0409-0038	4 6
0409-0039	6
0409-0040	6
0409-0043	4 6
0409-0045	4 6
0410-0002	5 6
0410-0003	5 6
0410-0005	4 5
0410-0006	4 5
0410-0010	4 5
0410-0011	5 6
0410-0012	5 6
0410-0013	5 6
0410-0015	5 6
0410-0017	4 5
0410-0018	4 5
0414-0010	4 5
0414-0015	4 5
0414-0017	4 5
0414-0018	6 8
0414-0019	4 5
0414-0020	6 8
0414-0021	4 5
0415-0001	6 8
0415-0004	6 8
0415-0005	5 6
0415-0011	6
0415-0012	6
0415-0013	5 8
0415-0014	5 6
0415-0016	6 8
0415-0017	5 6
0415-0019	5 8
0415-0020	6 8
0415-0025	5 6
AE_HCxJonf-145	4 5
AE_HCXJonf-148	4 6
AE_HCxJonf-157	4 5
AE_HCXJonf-162	4 6
AE_HCXJonf-168	5 6
AE_HCxJonf-175	6
AE_HCxJonf-183	4 5
AE_HCxJonf-185	6
AE0118-237	6
AE0118-238	5 6
AE0118-239	5 6
AE0118-240	6
AE0118-243	5 6
AE0118-244	6
AE0118-245	5 6
AE0118-246	5 6
AE0118-249	5 6
AE0206-159	5
AE0206-160	5
AE0206-161	5
AE0206-162	5
AE0206-163	5
AE0206-164	5 6
AE0206-165	5 6
AE0206-167	5 6
AE0206-168	5 6
AE0206-169	5 6
AE0206-170	5 6
AE0210-146	7 8
AE0210-147	4 6
AE0210-149	7 8
AE0210-150	4 7
AE0210-151	4 7
AE0210-152	5 8
AE0210-153	6 8
AE0210-154	4 7
AE0210-157	7 8
AE0210-158	4 6
AE0210-159	4 6
AE0210-162	7 8
AE0210-163	4 6
AE0210-164	6 8
AE0210-165	4 7
AE0210-166	4 7
AE0210-168	6 8
AE0210-169	6 8
AE0210-170	4 7
AE0210-171	4 7
AE0210-172	7 8
AE0210-173	7 8
AE0210-174	4 6
AE0213-175	5 6
AE0213-176	4 6
AE0213-177	4 6
AE0213-178	5 6
AE0213-179	4 5
AE0213-180	4 6
AE0213-181	4 6
AE0213-182	5
AE0213-183	5
AE0213-186	5
AE0213-187	4 6
AE0213-190	5 6
AE0213-193	5 6
AE0213-194	5 6
AE0213-195	5
AE0213-196	4 6
AE0213-197	5
AE0213-198	4 5
AE0213-199	4 6
AE0213-200	5
AE0213-201	4 5
AE0213-202	4 5
AE0213-205	4 6
AE0213-206	5
AE0251-323	5 6
AE0251-327	6
AE0251-329	5
AE0251-330	5
AE0251-331	5 6
AE0251-342	5
AE0251-343	5 6
AE0406-239	5 8
AE0406-254	4 5
AE0406-258	4 5
AE0406-259	4 5
AE0406-263	4 5
AE0406-264	5 8
AE0406-266	5 8
AE0406-271	4 6
AE0406-274	4 5
AE0406-278	6 8
AE0406-281	5 8
AE0406-286	6 8
AE0406-288	4 5
AE0406-289	5 8
AE0406-294	4 5
AE0406-298	5 8
Minneiska	5 6
NJ 303955	5
PRI 612-1	5 8
Arlet	4
Co-op 39	21 7
Pinova	5 6
Scired	4 6
Scifresh	4 6
0409-0025	4 5
0409-0026	6
0409-0027	6
0409-0031	4 5
0409-0033	4 6
0409-0047	5 6
G-14-050	5 6
G-14-052	4 6
G-14-054	6
G-14-055	6
G-14-056	5 6
G-14-057	4 6
G-14-059	6
G-14-060	5 6
G-14-061	5 6
G-14-062	4 5
G-14-064	5 6
G-14-065	5 6
G-14-069	5 6
G-14-067	6
G-14-068	6
G-14-071	6
G-14-073	4 5
G-14-074	5 6
G-14-075	4 6
G-14-076	4 5
G-14-077	4 5
G-14-078	5 6
G-14-080	4 6
G-09-232	5 6
G-09-233	4 6
G-09-234	5 6
G-09-235	5 6
G-09-236	5 6
G-09-237	5 6
G-09-238	4 6
G-09-239	5 6
G-09-240	4 6
G-09-241	5 6
G-09-242	5 6
G-09-243	5 6
G-09-245	4 6
G-09-246	4 6
G-09-258	5 6
G-09-259	4 6
G-09-260	5 6
G-09-261	5 6
G-09-262	5 6
G-09-263	5 6
G-09-264	4 6
G-09-265	5 6
G-09-266	5 6
G-09-267	4 6
G-09-268	4 6
0408-0021	6 8
Wijcik McIntosh	6
Beauty of Bath	8
Priam	5 6
Northern Spy	5 6
Co-op 15	6 8
MN 1702	5
WA 2	5 6
WA 5	6
Pitmaston Pineapple	4 8
0411-0011	4 8
0411-0017	4 6
0411-0023	4 6
AE0250-086	5 6
AE0250-087	6
AE0250-089	6
AE0250-090	6
AE0250-092	6
AE0250-093	5 6
AE0250-094	5 6
AE0250-095	5 6
Sonya	5 6
Co-op 38	5 6
AE0250-096	5 6
AE0250-327	4 5
Co-op 30	6 8
Jonagrimes	2 5
AE0211-036	5 6
G-07-039	22 4
PRI 14-152	5 6
PRI 47-176	6
G-07-041	4 8
BC-8S-27-43	5 6
AE0250-091	5 6
AE0250-097	6 8
AE0250-325	5
AE0250-326	5 6
AE0250-329	5
AE0250-333	6 8
AE0250-334	6 8
AE0250-335	5
AE0250-336	5 6
AE0250-338	5
AE0250-341	5 8
AE0211-038	4 8
AE0211-043	5 8
AE0211-045	4 8
AE0211-051	5 8
G-07-010	4 5
G-07-014	4 5
G-07-015	4 5
G-07-019	4 5
G-07-020	4 5
G-07-024	4 5
G-07-032	4 5
G-07-033	4 5
G-07-034	4 5
G-07-035	4 5
G-07-044	4 5
AE0211-053	4 5
AE0211-054	4 5
AE0250-088	5
AE0250-324	5
AE0250-328	5
AE0250-331	5 6
AE0250-332	5
AE0250-337	5
AE0250-339	5
Minnewashta	5
Autumn Crisp	4 5
G-14-066	6
Lu1-11-010	5 8
Lu1-11-013	6
Lu1-11-016	6
Lu1-11-017	6 8
Lu1-11-018	6 8
NJ 90	6
Lord Lambourne	6
Antonovka GH	4 6
Grimes Golden	2 4
Kidds Orange Red	4 8
Malus baccata Hansen #2	6 9
Malus baccata Jackii	6
Summerred	5 6
William's Pride	4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-11-29a	Apple-RosBREED-3.9K-2019	11	38.4	38.46

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22
GDsnp01878	B	A	A	B	B	A	A	B	A	B	A	-	A	A	B	-	-	-	-	B	B
RosBREEDSNP_SNP_CT_19384185_Lg11_01878_MAF20_MDP0000829038_exon1	B	A	A	B	B	B	A	B	A	A	B	-	A	-	-	-	-	-	-	A	-
RosBREEDSNP_SNP_CT_6293474_Lg8_RosCOS1254_MAF40_MDP0000160376_exon14	-	-	B	A	B	B	B	B	-	A	B	-	B	B	B	A	B	A	B	B	B
RosBREEDSNP_SNP_TG_19378044_Lg11_01878_MAF20_1619166_exon2	A	A	A	A	A	A	B	B	B	A	B	A	-	A	A	-	-	A	A	A	B

Alignments

Feature Name	Type	Location	Analysis
Chr11	chromosome	Chr11:24043473..24729332.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation