Mdo-HB-11-16

Haplotype Block Overview

Name	Mdo-HB-11-16
Species	Malus x domestica
Stock Haplotype	[view all 421]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	6
Rome Beauty Law	10
Jonafree	6 7
Redfree	10 37
Spartan	5 6
Wagener	7
Worcester Pearmain	10 6
Tsugaru	4 6
Golden Delicious	4 5
Fuji	10 6
Empire	5 7
Gala	4 6
Honeycrisp	5 7
Elstar	5 6
Marshall McIntosh	5 7
Cripps Pink	5 6
Granny Smith	5 6
Jonathan	6 7
Ralls Janet	10
Delicious	5 6
Discovery	6
Prima	10 6
821	5
Fiesta	6 7
Ingrid Marie	6
Idared	7
Esopus Spitzenburg	5 7
Braeburn	5 6
Sansa	10 6
Lodi	6
James Grieve	6 7
Cripps Red	5
Burgundy	12 6
Akane	10 7
Ambrosia	4 5
Aurora Golden Gala	5 6
Beacon	24 5
Ben Davis	5
Cameo	4 6
Chinook	4
Clivia	5 6
Co-op 17	10 5
Co-op 18	6 7
Dayton	10 4 6 7
Delblush	4 5
Delorgue	5 7
Dolgo	5
Geheimrat Dr. Oldenburg	5 7
Duchess of Oldenburg	5 6
Early Cortland	5 6 7
Empress	5 6
F2 26829-2-2	10
Fantazja	5 7
Fireside	5 6
Fortune	4 5
Frostbite	6 7
Ginger Gold	4 6
GMAL 4327	5 6
GMAL 4328	5 6
GMAL 4329	5
GMAL 4332	5
Goodland	5 6
Haralson	5 6
Honeygold	4 5
Hudson	5
Jersey Black	5
Jonamac	5 6
Keepsake	5 7
Kerr	5 6
Lady Williams	5 6
Liberty	10 5
Linda	5 6
Liveland Raspberry	5
Longfield	4 5
Macoun	5
Malinda	29 5
Melba	7
Melrose	6 7
MN 1627	5 6
MN 1628	6 7
MN 1691	5 6
MN 1706	5 6
MN 1708	6 7
MN 1760	5 7
MN 1764	5 6
MN 1789	5 6
MN 1802	5 7
MN 1836	5 6
MN 1837	5 6
MN 1839	5 6
MN 1888	6
MN 1899	5 6
MN 1940	5 6
MN 2016	6 7
AA-44	4 7
Monroe	10 6
Montgomery	6 7
Nicola	4 6
NJ 31	10 6
NJ 53	5
Oriole	5
PRI 14-126	10 5
PRI 14-510	10 5
PRI 1661-2	6 7
PRI 855-102	7
Primula	6
Raritan	6
Regent	5 6
Russian Seedling	5
Sawa	6 7
Sciros	5 6
Sharon	5 6
Silken	4 5
Wildung	6
Splendour	4 5
State Fair	6
NJ 55	5
Co-op 29	4 5
Sunrise	4 5
Sweet Sixteen	6 7
Topaz	6
Vista Bella	5 6
Wealthy	5 6
Winesap	5
Winter Banana	5
Yellow Newtown	6 7
Yellow Transparent	5 6
0407-0001	6 7
0407-0005	4 5
0407-0006	6 7
0407-0007	5 7
0407-0008	6 7
0408-0003	5 6
0408-0004	6
0408-0005	6
0408-0007	6
0408-0008	6
0408-0010	6
0408-0011	5 6
0408-0014	5 6
0408-0015	5 6
0409-0022	5 6
0409-0024	5 7
0409-0028	6 7
0409-0030	6 7
0409-0032	5 6
0409-0035	5 7
0409-0036	5 6
0409-0038	6 7
0409-0039	5 7
0409-0040	5 7
0409-0043	6 7
0409-0045	5 7
0410-0002	5 6
0410-0003	5 6
0410-0005	6
0410-0006	5 6
0410-0010	5 6
0410-0011	5
0410-0012	5 6
0410-0013	5 6
0410-0015	5 6
0410-0017	6
0410-0018	6
0414-0010	5 7
0414-0015	4 5
0414-0017	7
0414-0018	6 7
0414-0020	6 7
0414-0021	5 7
0415-0001	6 7
0415-0004	5 6
0415-0005	5 6
0415-0011	5 6
0415-0012	6 7
0415-0013	5 6
0415-0014	5 6
0415-0016	5 6
0415-0017	5 6
0415-0019	5 6
0415-0020	6 7
0415-0025	5 6
AE_HCxJonf-145	5 7
AE_HCXJonf-148	5 6
AE_HCxJonf-157	5 7
AE_HCXJonf-162	5 7
AE_HCXJonf-168	5 7
AE_HCxJonf-175	6 7
AE_HCxJonf-183	5 7
AE_HCxJonf-185	6 7
AE0118-237	6 7
AE0118-238	5 6
AE0118-239	5 7
AE0118-240	5 7
AE0118-243	5 7
AE0118-244	6 7
AE0118-245	5
AE0118-246	5
AE0118-249	5
AE0206-159	4 5
AE0206-160	4 5
AE0206-161	4 6
AE0206-162	4 5
AE0206-163	4 5
AE0206-164	5
AE0206-165	5 6
AE0206-167	5 6
AE0206-168	5
AE0206-169	5 6
AE0206-170	4 6
AE0210-146	5
AE0210-147	4 5
AE0210-149	5
AE0210-150	4 5
AE0210-151	4 5
AE0210-152	4 5
AE0210-153	5
AE0210-154	5
AE0210-157	4 5
AE0210-158	4 5
AE0210-159	4 5
AE0210-162	5
AE0210-163	4 5
AE0210-164	5
AE0210-165	4 5
AE0210-166	4 5
AE0210-168	5
AE0210-169	5
AE0210-170	5
AE0210-171	4 5
AE0210-172	5
AE0210-173	5
AE0210-174	4 5
AE0213-175	5 6
AE0213-176	4 5
AE0213-177	4 5
AE0213-178	5 6
AE0213-179	4 5
AE0213-180	4 5
AE0213-181	4 5
AE0213-182	5 6
AE0213-183	4 5
AE0213-186	5 6
AE0213-187	5 6
AE0213-190	5 6
AE0213-193	5 6
AE0213-194	5 6
AE0213-195	5 6
AE0213-196	4 5
AE0213-197	5 6
AE0213-198	4 5
AE0213-199	5 6
AE0213-200	5 6
AE0213-201	4 5
AE0213-202	4 5
AE0213-205	4 5
AE0213-206	5 6
AE0251-323	5 6
AE0251-325	4 6
AE0251-327	5 7
AE0251-329	4 6
AE0251-330	4 6
AE0251-331	5 6
AE0251-342	4 7
AE0251-343	4 7
AE0406-239	5
AE0406-254	4 5
AE0406-258	4 5
AE0406-259	4 5
AE0406-263	4 5
AE0406-264	5
AE0406-266	5
AE0406-271	4 7
AE0406-274	5
AE0406-278	5 7
AE0406-281	5
AE0406-286	5
AE0406-288	4 5
AE0406-289	4 5
AE0406-294	4 5
AE0406-298	5
Minneiska	5
NJ 303955	5
PRI 612-1	5 6
Arlet	4 7
Co-op 39	24 5
Pinova	5
Scired	5 6
Scifresh	6
0409-0025	5 6
0409-0026	5 7
0409-0027	5 7
0409-0031	5
0409-0033	5 6
0409-0047	5
G-14-050	5 6
G-14-052	5 6
G-14-054	10 5
G-14-055	10 5
G-14-056	5 6
G-14-057	5 6
G-14-059	10 5
G-14-060	10 5
G-14-061	5 6
G-14-062	10 5
G-14-064	10 5
G-14-065	10 5
G-14-069	10 5
G-14-067	10 5
G-14-068	10 5
G-14-071	10 5
G-14-073	10 5
G-14-074	10 5
G-14-075	5 6
G-14-076	5 6
G-14-077	5 6
G-14-078	10 5
G-14-080	5 6
G-09-232	5 6
G-09-233	4 6
G-09-234	6
G-09-235	6
G-09-236	4 6
G-09-237	5 6
G-09-239	4 6
G-09-240	6
G-09-241	6
G-09-242	4 5
G-09-243	5 6
G-09-245	4 5
G-09-246	4 5
G-09-258	6
G-09-259	4 5
G-09-260	6
G-09-261	5 6
G-09-262	5 6
G-09-263	5 6
G-09-264	4 6
G-09-265	5 6
G-09-266	6
G-09-267	4 5
G-09-268	4 5
0408-0021	5 6
Wijcik McIntosh	5 7
Beauty of Bath	24 6
Priam	6
Northern Spy	5 6
Co-op 15	5 6
MN 1702	5 6
WA 2	4 5
WA 5	5
Pitmaston Pineapple	24 7
0411-0011	6 7
0411-0017	6 7
0411-0023	6 7
AE0250-086	4 6
AE0250-087	5 6
AE0250-089	5 7
AE0250-090	5 6
AE0250-092	5 7
AE0250-093	4 6
AE0250-094	4 7
AE0250-095	4 7
Sonya	4 6
Co-op 38	4 5
AE0250-096	5 7
AE0250-327	4 5
Co-op 30	6
AE0211-036	6
PRI 14-152	10 5
G-07-041	6
BC-8S-27-43	4 5
AE0250-097	6 7
AE0250-325	5
AE0250-326	5 7
AE0250-329	5
AE0250-333	5 6
AE0250-334	5 6
AE0250-335	5
AE0250-336	5 7
AE0250-338	5
AE0250-341	5
AE0211-038	4 6
AE0211-043	6
AE0211-045	4 6
AE0211-051	5 6
G-07-010	6
G-07-014	10 6
G-07-015	10 5
G-07-020	6
G-07-024	10 6
G-07-032	10 6
G-07-033	5 6
G-07-034	5 6
G-07-035	6
G-07-044	10 6
AE0211-053	4 6
AE0211-054	4 6
AE0250-088	5 6
AE0250-324	5 6
AE0250-328	5
AE0250-331	5 7
AE0250-332	5
AE0250-337	5 6
AE0250-339	5 6
Minnewashta	5 6
Autumn Crisp	5 6
G-14-066	10 5
Lu1-11-013	10 7
Lu1-11-016	10 7
Lu1-11-017	6 7
Lu1-11-018	5 6
NJ 90	5
Lord Lambourne	6
Antonovka GH	4
Grimes Golden	2 4
Kidds Orange Red	6
Malus baccata Hansen #2	5
Malus baccata Jackii	5
Summerred	5 7
William's Pride	4 7

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-11-16	Apple-RosBREED-3.9K-2019	11	22.07	22.07

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40
GDsnp00377	B	A	A	B	B	B	B	A	B	B	B	B	-	-	B	B	B	B	B	B	-	-	B	-	-	-	-	B	B	-	B	B	-	-	A	B	A	A	-
RosBREEDSNP_SNP_CT_11340205_Lg11_00377_MAF30_1668656_exon1	-	-	B	B	B	A	-	-	B	B	B	B	-	-	B	B	-	A	A	B	B	B	A	B	B	B	A	-	A	-	-	-	A	B	B	A	A	A	B
RosBREEDSNP_SNP_GA_11315571_Lg11_00377_MAF50_96003_exon1	-	-	B	B	A	B	B	B	A	A	B	-	B	A	-	-	A	B	-	B	-	-	A	B	A	-	-	A	-	B	-	-	A	B	B	B	B	A	A
RosBREEDSNP_SNP_TC_11342497_Lg11_00377_MAF50_1668656_exon10	-	-	A	A	B	A	A	A	A	-	-	-	-	-	B	A	B	-	-	B	B	A	A	A	A	-	-	A	A	A	B	A	A	B	-	B	A	A	B

Alignments

Feature Name	Type	Location	Analysis
Chr11	chromosome	Chr11:11180965..11199609.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation