Mdo-HB-10-48

Haplotype Block Overview
Name Mdo-HB-10-48
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 9
Rome Beauty Law 5 7
Jonafree 8 9
Redfree 5 7
Spartan 5
Wagener 5 9
Worcester Pearmain 7 9
Tsugaru 4 7
Golden Delicious 4 5
Fuji 5
Empire 5
Gala 4 9
Honeycrisp 5 8
Elstar 5 9
Marshall McIntosh 5
Cripps Pink 4 7
Granny Smith 6 7
Jonathan 7 9
Ralls Janet 5
Delicious 5
Discovery 5 9
Prima 5 9
821 5 7
Fiesta 7 9
Ingrid Marie 9
Idared 7 9
Esopus Spitzenburg 5 7
Braeburn 5
Sansa 7 9
Lodi 5
James Grieve 9
Cripps Red 4 7
Burgundy 5 7
Akane 7 9
Ambrosia 5
Aurora Golden Gala 4 5
Beacon 26 27
Ben Davis 4 5 7
Cameo 4 5
Chinook 4 5
Clivia 5 9
Co-op 17 5 9
Co-op 18 8 9
Dayton 4 7 9
Delblush 4 5
Delcorf 7
Delorgue 7
Dolgo 29 9
Geheimrat Dr. Oldenburg 5 9
Duchess of Oldenburg 6 7
Early Cortland 5 7
Empress 5
F2 26829-2-2 5
Fantazja 5 7
Fireside 7 9
Fortune 5
Frostbite 5 6
Ginger Gold 4 5
GMAL 4327 24 5
GMAL 4328 9
GMAL 4329 5 9
GMAL 4332 9
Goodland 5 6
Haralson 7
Honeygold 5 7
Hudson 5 9
Jersey Black 5
Jonamac 5 9
Keepsake 6 8
Kerr 7 9
Lady Williams 7
Liberty 5 7
Linda 5 7
Longfield 5 9
Macoun 5
Malinda 7 9
Mantet 9
Melba 30 5
MN 1627 5 6
MN 1628 6 9
MN 1691 5 7
MN 1706 5 8
MN 1708 5 6
MN 1760 9
MN 1764 9
MN 1789 5 7
MN 1802 5 8
MN 1836 6 7
MN 1837 5 7
MN 1839 6 9
MN 1888 5 6
MN 1899 5 9
MN 1940 5 7
MN 2016 7
AA-44 5 7
Monroe 7
Montgomery 5
Nicola 5 9
NJ 31 8
NJ 53 5
Oriole 7 9
PRI 14-126 4 5
PRI 14-510 4 5
PRI 1661-2 5
PRI 54-12 5 7
PRI 855-102 9
Primula 5 7
Raritan 5 9
Regent 5 7
Russian Seedling 24
Sawa 5 7
Sciros 4 5
Sharon 5 7
Silken 5 7
Wildung 7 9
Splendour 5
State Fair 7 9
NJ 55 4 9
Co-op 29 4 5
Sunrise 5
Sweet Sixteen 5 8
Topaz 4 5
Vista Bella 5
Wealthy 7 9
Winesap 5
Winter Banana 5 9
Yellow Newtown 5
Yellow Transparent 5
0407-0001 4
0407-0005 4 7
0407-0006 4 7
0407-0007 4 7
0407-0008 5 7
0408-0003 5
0408-0004 4 5
0408-0005 4 5
0408-0007 4 5
0408-0008 5
0408-0010 5
0408-0011 4 5
0408-0014 5
0408-0015 4 5
0409-0022 4 5
0409-0024 5 8
0409-0028 4 5
0409-0030 5
0409-0032 4 5
0409-0035 4 8
0409-0036 4 8
0409-0038 5 8
0409-0039 5
0409-0040 5 8
0409-0043 4 5
0409-0045 4 5
0410-0002 5 6
0410-0003 4 6
0410-0005 4 7
0410-0006 4 7
0410-0010 5 7
0410-0011 4 6
0410-0012 4 6
0410-0013 5 6
0410-0015 4 6
0410-0017 5 6
0410-0018 5 7
0414-0010 4 8
0414-0015 5 7
0414-0017 4 5
0414-0018 5 8
0414-0019 7 8
0414-0020 5
0414-0021 7 8
0415-0001 5 8
0415-0004 5 8
0415-0005 5
0415-0011 5
0415-0012 5
0415-0013 5 8
0415-0014 5 9
0415-0016 5 8
0415-0017 5
0415-0019 5 8
0415-0020 5
0415-0025 5
AE_HCxJonf-145 8 9
AE_HCXJonf-148 8 9
AE_HCxJonf-157 5 9
AE_HCXJonf-162 8 9
AE_HCXJonf-168 5
AE_HCxJonf-175 5 9
AE_HCxJonf-183 5 8
AE_HCxJonf-185 5 9
AE0118-237 5 8
AE0118-238 5 7
AE0118-239 5 9
AE0118-240 5
AE0118-243 7 8
AE0118-244 7 8
AE0118-245 5 8
AE0118-246 5 8
AE0118-249 5 8
AE0206-159 4 7
AE0206-160 4 7
AE0206-161 4 7
AE0206-162 5 7
AE0206-163 5 7
AE0206-164 5 7
AE0206-165 4 7
AE0206-167 5 7
AE0206-168 4 7
AE0206-169 5 7
AE0206-170 4 7
AE0210-146 5 9
AE0210-147 5
AE0210-149 5
AE0210-150 5
AE0210-151 5
AE0210-152 5 7
AE0210-153 5 9
AE0210-154 5
AE0210-157 5 9
AE0210-158 5 9
AE0210-159 5 9
AE0210-162 5 9
AE0210-163 5
AE0210-164 5 9
AE0210-165 5 9
AE0210-166 5
AE0210-168 5 9
AE0210-169 5 9
AE0210-170 5 9
AE0210-171 5 9
AE0210-172 5 9
AE0210-173 5
AE0210-174 5
AE0213-175 5 9
AE0213-176 5 9
AE0213-177 5 9
AE0213-178 4 9
AE0213-179 4 9
AE0213-180 5 9
AE0213-181 5 9
AE0213-182 4 9
AE0213-183 4 9
AE0213-186 4 9
AE0213-187 4 9
AE0213-190 4 9
AE0213-193 5 9
AE0213-194 5 9
AE0213-195 4 9
AE0213-196 4 9
AE0213-197 4 9
AE0213-198 5 9
AE0213-199 5 9
AE0213-200 5 9
AE0213-201 5 9
AE0213-202 5 9
AE0213-205 4 9
AE0213-206 4 9
AE0251-323 5 8
AE0251-325 5 8
AE0251-327 5
AE0251-329 4 5
AE0251-330 5
AE0251-331 4 8
AE0251-342 4 8
AE0251-343 4 5
AE0406-239 5
AE0406-254 5 8
AE0406-258 5 8
AE0406-259 5 8
AE0406-263 7 8
AE0406-264 5 8
AE0406-266 7 8
AE0406-271 5 7
AE0406-274 5 8
AE0406-278 5 7
AE0406-281 7 8
AE0406-286 5
AE0406-288 7 8
AE0406-289 5 7
AE0406-294 5 8
AE0406-298 5 8
Minneiska 7 8
NJ 303955 9
PRI 612-1 4 5
Arlet 4 7
Co-op 39 7 9
Pinova 4 5
Scired 4 5
Scifresh 4 5
0409-0025 4 5
0409-0026 4 5
0409-0027 5
0409-0031 4 8
0409-0033 5 8
0409-0047 5
G-14-050 5
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 5
G-14-059 5
G-14-060 4 5
G-14-061 5
G-14-062 4 5
G-14-064 5
G-14-065 4 5
G-14-069 5
G-14-067 5
G-14-068 4 5
G-14-071 4 5
G-14-073 5
G-14-074 4 5
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 4 5
G-09-233 4 5
G-09-234 5
G-09-235 4 5
G-09-236 4 5
G-09-237 4 5
G-09-238 5
G-09-239 5
G-09-240 4 5
G-09-241 5
G-09-242 5
G-09-243 4 5
G-09-245 5
G-09-246 4 5
G-09-258 5
G-09-259 4 5
G-09-260 5
G-09-261 4 5
G-09-262 5
G-09-263 4 5
G-09-264 4 5
G-09-265 4 5
G-09-266 4 5
G-09-267 5
G-09-268 4 5
0408-0021 5
Wijcik McIntosh 5
Beauty of Bath 36 5
Priam 4 7
Northern Spy 8 9
Co-op 15 5 7
MN 1702 6 9
WA 2 4 5
WA 5 5
Pitmaston Pineapple 5 9
0411-0011 4 5
0411-0017 4 5
0411-0023 5 7
AE0250-086 4 5
AE0250-087 4 8
AE0250-089 4 5
AE0250-090 5 8
AE0250-092 4 5
AE0250-093 5 8
AE0250-094 4 8
AE0250-095 5
Sonya 4 5
Co-op 38 4 9
AE0250-096 5 7
AE0250-327 4 5
Co-op 30 5
AE0211-036 4 5
G-07-039 5 7
PRI 14-152 5
PRI 47-176 5 7
G-07-041 5 9
BC-8S-27-43 4 5
AE0250-091 24 5
AE0250-097 5 8
AE0250-325 24 8
AE0250-326 24 5
AE0250-329 24 5
AE0250-333 5 8
AE0250-334 24 5
AE0250-335 5 8
AE0250-336 5
AE0250-338 24 5
AE0250-341 5
AE0211-038 4 9
AE0211-043 5 9
AE0211-045 5 9
AE0211-051 5 9
G-07-010 7
G-07-014 6 7
G-07-015 6 9
G-07-019 7 9
G-07-020 6 9
G-07-024 7 9
G-07-032 7 9
G-07-033 7 9
G-07-034 6 7
G-07-035 6 9
G-07-044 6 9
AE0211-053 5 7
AE0211-054 5 7
AE0250-088 5 7
AE0250-324 5 7
AE0250-328 5 7
AE0250-331 7 8
AE0250-332 7 8
AE0250-337 5 7
AE0250-339 7 8
Minnewashta 7
Autumn Crisp 5 7
G-14-066 4 5
Lu1-11-010 5
Lu1-11-013 4 5
Lu1-11-016 5
Lu1-11-017 5
Lu1-11-018 5
NJ 90 5
Lord Lambourne 7 9
Antonovka GH 5
Grimes Golden 2 4
Kidds Orange Red 5 9
Malus baccata Hansen #2 5
Malus baccata Jackii 5
Summerred 4 44
William's Pride 7 9
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-10-48Apple-RosBREED-3.9K-20191062.8762.87
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344
GDsnp01299BAABBBBBB--BBBAB-BBBBBBBBBBBBABAAA-BBBB----
RosBREEDSNP_SNP_CT_30391137_Lg10_01299_MAF30_MDP0000119942_exon2--BBAABBBBBA------BBABBBBA-------AAABABBABA
RosBREEDSNP_SNP_CT_30403972_Lg10_01299_MAF40_MDP0000379873_exon1--BBBBBABBBBB-BB------AABAA------ABBABABBAB
RosBREEDSNP_SNP_TC_30393147_Lg10_01299_MAF10_MDP0000292611_exon5--AABABA-AB---AAA---AAA-AA-AA-AAAABAABB---A
RosBREEDSNP_SNP_TG_30396941_Lg10_01299_MAF30_519689_exon1AAAAAAABAAAAABAA--ABAAABBABAB--A-AA---BAABA
Alignments
Feature NameTypeLocationAnalysis
Chr10 chromosome Chr10:36105647..36118479. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation