Mdo-HB-10-39

Haplotype Block Overview
Name Mdo-HB-10-39
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 5 7
Jonafree 25 5
Redfree 10 5
Spartan 14 5
Wagener 5
Worcester Pearmain 33 50
Tsugaru 4 5
Golden Delicious 4 5
Fuji 4
Empire 14 5
Gala 4 5
Honeycrisp 6
Elstar 33 4
Marshall McIntosh 14 5
Cripps Pink 11 4
Granny Smith 10 5
Jonathan 25 5
Ralls Janet 3 4
Delicious 4 5
Discovery 33 4
Prima 20 4
Fiesta 5
Ingrid Marie 33 5
Idared 5
Esopus Spitzenburg 4 5
Braeburn 4
Sansa 33 5
Lodi 14 33
James Grieve 10 5
Cripps Red 4 5
Burgundy 10 5
Akane 33 5
Ambrosia 5
Aurora Golden Gala 4 5
Beacon 4 5
Ben Davis 10 20 4 5
Cameo 4
Chinook 4 5
Clivia 4 5
Co-op 17 24 25
Co-op 18 25 5
Dayton 4 6
Delblush 4 5
Delorgue 5
Dolgo 44 54
Geheimrat Dr. Oldenburg 33 4
Duchess of Oldenburg 6 7
Early Cortland 14 5
Empress 14
F2 26829-2-2 20 7
Fantazja 14 6
Fireside 4 6
Fortune 5 50
Frostbite 4 6
Ginger Gold 14 4
GMAL 4327 37 7
GMAL 4328 38 7
GMAL 4329 4 5
GMAL 4332 38 7
Goodland 14 7
Haralson 5 6
Honeygold 5
Hudson 14 4
Jersey Black 10 3
Jonamac 14 25
Keepsake 5 6
Kerr 54 6
Lady Williams 11 5
Liberty 10 6
Linda 6 7
Longfield 38 50
Macoun 10 14
Malinda 4 5
Mantet 36 4
Melba 14
MN 1627 5 6
MN 1628 4 6
MN 1691 14 6
MN 1706 4 5
MN 1708 5 6
MN 1760 25
MN 1764 25
MN 1789 6
MN 1802 6
MN 1836 5 6
MN 1837 14 5
MN 1839 4 6
MN 1888 14 6
MN 1899 5 6
MN 1940 14 6
MN 2016 5
AA-44 33 6
Monroe 5
Montgomery 14 33
Nicola 4
NJ 31 5
NJ 53 14 4
Oriole 25 4
PRI 14-126 4 7
PRI 14-510 20 4
PRI 1661-2 4 5
PRI 54-12 6 7
PRI 855-102 25
Primula 14 5
Raritan 60 61
Regent 5 6
Russian Seedling 4
Sawa 14 6
Sciros 4
Sharon 14 7
Silken 4 5
Wildung 4 7
Splendour 4 5
State Fair 4 5
NJ 55 4 5
Co-op 29 4 50
Sunrise 4 5
Sweet Sixteen 5 6
Topaz 14 4
Vista Bella 14
Wealthy 25 6
Winesap 10 4
Winter Banana 50
Yellow Newtown 5 62
Yellow Transparent 33
0407-0001 4
0407-0005 4 5
0407-0006 5
0407-0007 4 5
0407-0008 4 5
0408-0003 4 5
0408-0004 4
0408-0005 4
0408-0007 4
0408-0008 4 5
0408-0010 4 5
0408-0011 4
0408-0014 4
0408-0015 4
0409-0022 4 6
0409-0024 5 6
0409-0028 4 6
0409-0030 5 6
0409-0032 4 6
0409-0035 4 6
0409-0036 4 6
0409-0038 4 6
0409-0039 5 6
0409-0040 4 6
0409-0043 4 6
0409-0045 4 6
0410-0002 10 5
0410-0003 10 4
0410-0005 4 5
0410-0006 4 5
0410-0010 5
0410-0011 10 4
0410-0012 10 4
0410-0013 10 5
0410-0015 10 4
0410-0017 10 5
0410-0018 4 5
0414-0010 4 6
0414-0015 5 6
0414-0017 4 6
0414-0018 4 6
0414-0019 5 6
0414-0020 4 6
0414-0021 5 6
0415-0001 4 6
0415-0004 4 6
0415-0005 4 6
0415-0011 4 6
0415-0012 4 6
0415-0013 4 6
0415-0014 5 6
0415-0016 4 6
0415-0017 4 6
0415-0019 4 6
0415-0020 4 6
0415-0025 4 6
AE_HCxJonf-145 25 6
AE_HCXJonf-148 5 6
AE_HCxJonf-157 5 6
AE_HCXJonf-162 25 6
AE_HCXJonf-168 4 6
AE_HCxJonf-175 25 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 25 6
AE0118-237 5 6
AE0118-238 6
AE0118-239 4 6
AE0118-240 5 6
AE0118-243 6
AE0118-244 6
AE0118-245 6
AE0118-246 5 6
AE0118-249 5 6
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 4 5
AE0206-162 4 5
AE0206-163 4 5
AE0206-164 4 6
AE0206-165 4 6
AE0206-167 4 5
AE0206-168 4 6
AE0206-169 4 5
AE0206-170 4 5
AE0210-146 4 5
AE0210-147 5
AE0210-149 4 5
AE0210-150 4 5
AE0210-151 4 5
AE0210-152 5 6
AE0210-153 4
AE0210-154 5
AE0210-157 4
AE0210-158 4
AE0210-159 4
AE0210-162 4 5
AE0210-163 5
AE0210-164 4 5
AE0210-165 4
AE0210-166 5
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4
AE0210-171 5
AE0210-172 4
AE0210-173 4 5
AE0210-174 4 5
AE0213-175 14 38
AE0213-176 14 7
AE0213-177 14 7
AE0213-178 14 38
AE0213-179 38 4
AE0213-180 14 38
AE0213-181 14 7
AE0213-182 4 7
AE0213-183 38 4
AE0213-186 38 4
AE0213-187 38 4
AE0213-190 38 4
AE0213-193 14 7
AE0213-194 14 7
AE0213-195 14 38
AE0213-196 38 4
AE0213-197 38 4
AE0213-198 14 7
AE0213-199 14 38
AE0213-200 14 7
AE0213-201 14 7
AE0213-202 14 7
AE0213-205 14 7
AE0213-206 4 7
AE0251-323 4 6
AE0251-325 4 5
AE0251-327 4 6
AE0251-329 4 6
AE0251-330 4 6
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 4 6
AE0406-239 4 6
AE0406-254 4 6
AE0406-258 5 6
AE0406-259 5 6
AE0406-263 5 6
AE0406-264 4 6
AE0406-266 5 6
AE0406-271 5 6
AE0406-274 4 6
AE0406-278 5 6
AE0406-281 5 6
AE0406-286 4 6
AE0406-288 5 6
AE0406-289 5 6
AE0406-294 4 6
AE0406-298 4 6
Minneiska 5 6
NJ 303955 5
PRI 612-1 4
Arlet 4 5
Co-op 39 33 54
Pinova 4
Scired 4
Scifresh 4
0409-0025 4 6
0409-0026 4 6
0409-0027 5 6
0409-0031 4 6
0409-0033 5 6
0409-0047 5 6
G-14-050 4 5
G-14-052 4 5
G-14-054 4
G-14-055 4
G-14-056 4 5
G-14-057 4 5
G-14-059 4
G-14-060 4 5
G-14-061 4 5
G-14-062 4 5
G-14-064 4
G-14-065 4
G-14-069 4 5
G-14-067 4
G-14-068 4 5
G-14-071 4
G-14-073 4
G-14-074 4 5
G-14-075 4
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 4
G-09-233 4
G-09-234 14 4
G-09-235 4
G-09-236 4
G-09-237 4
G-09-238 4
G-09-239 14 4
G-09-240 4
G-09-241 14 4
G-09-242 14 4
G-09-243 4
G-09-245 14 4
G-09-246 4
G-09-258 14 4
G-09-259 4
G-09-260 14 4
G-09-261 4
G-09-262 14 4
G-09-263 4
G-09-264 4
G-09-265 4
G-09-266 4
G-09-267 14 4
G-09-268 4
0408-0021 4 5
Wijcik McIntosh 15
Beauty of Bath 4
Priam 4 5
Northern Spy 4 5
Co-op 15 4 5
MN 1702 6
WA 2 4
WA 5 4
Pitmaston Pineapple 4 7
0411-0011 4
0411-0017 4
0411-0023 4 5
AE0250-086 4 6
AE0250-087 4 5
AE0250-089 4 6
AE0250-090 4 5
AE0250-092 4 6
AE0250-093 4 5
AE0250-094 4 5
AE0250-095 4 5
Sonya 4
Co-op 38 25 4
AE0250-096 14 6
AE0250-327 4 6
Co-op 30 4
AE0211-036 37 4
G-07-039 15 5
PRI 14-152 5 7
PRI 47-176 20 5
G-07-041 4 5
BC-8S-27-43 4
AE0250-091 6 7
AE0250-097 37 6
AE0250-325 6 7
AE0250-326 6 7
AE0250-329 6 7
AE0250-333 37 6
AE0250-334 6 7
AE0250-335 37 6
AE0250-336 37 6
AE0250-338 37 6
AE0250-341 37 6
AE0211-038 38 4
AE0211-043 14 38
AE0211-045 14 38
AE0211-051 14 7
G-07-014 10 33
G-07-015 10 5
G-07-019 5
G-07-020 10 5
G-07-024 5
G-07-032 5
G-07-033 10 5
G-07-035 10 5
G-07-044 10 5
AE0211-053 4 6
AE0211-054 14 6
AE0250-088 5 6
AE0250-324 5 6
AE0250-328 5 6
AE0250-331 5 6
AE0250-332 5 6
AE0250-337 6
AE0250-339 6
Minnewashta 5 6
Autumn Crisp 5
G-14-066 4
Lu1-11-010 4 5
Lu1-11-013 4
Lu1-11-016 4
Lu1-11-017 4 5
Lu1-11-018 4 5
NJ 90 14 5
Lord Lambourne 10 50
Antonovka GH 5 7
Grimes Golden 3 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 65 66
Malus baccata Jackii 67
Summerred 4 68
William's Pride 25 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-10-39Apple-RosBREED-3.9K-20191053.754.35
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768
GDsnp00812BABAAB--AABAAAAB--AABAAABBBA--BA-BABAAAAAAABBA--A-A-BAAAAAABBABAAA-
RosBREEDSNP_SNP_AC_26616826_Lg10_00812_MAF30_408812_exon1AAAABABABB--AABBABBBABBBAAABBAAA---BBBBBBAAB----BABABAABAABAB--BABA
RosBREEDSNP_SNP_AG_26549234_Lg10_00971_MAF10_MDP0000296383_exon3AAAAAAAABAAAAAAAAAA--ABAAAAAAAAAAAAAABAAAAAA----AAA-AAABAABAB--AAA-
RosBREEDSNP_SNP_AG_26614519_Lg10_00812_MAF30_1647399_exon1AAAABABABAABAAAAAAB--ABAAAAAAAAB-AAAABBAABAA----AAB-A---AAABB--ABA-
RosBREEDSNP_SNP_AG_26635395_Lg10_00812_MAF20_74523_exon1--AAAB--AAAAB-BA--A----B-AAAAAAA---BB---------BAA--AAAAAABAAAABAAAB
RosBREEDSNP_SNP_GA_26660293_Lg10_00812_MAF10_741605_exon1--BBBBBBBABBBBBBBBB--BBBBBABABBBBBBBB-BB--BB----B-B-BBBBBBBBB--BBB-
RosBREEDSNP_SNP_TC_26516335_Lg10_00971_MAF20_MDP0000204582_exon5AAAAAAAABBAAAA----B--ABAA-ABBAAA-AAAABAAAA------AAB-AAABAABAB----B-
RosBREEDSNP_SNP_TG_26612165_Lg10_00812_MAF20_1662323_exon1AAAAAAAABBAAAAAAAAB--ABAAAABBA-A-AAABBABBAAA----BAB-A-AB--BAB--AAA-
Alignments
Feature NameTypeLocationAnalysis
Chr10 chromosome Chr10:31584383..31721402. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation