Mdo-HB-10-37

Haplotype Block Overview
Name Mdo-HB-10-37
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3
Rome Beauty Law 10 11
Jonafree 3 5
Redfree 11 8
Spartan 10 3
Wagener 3
Worcester Pearmain 11 3
Tsugaru 3
Golden Delicious 3
Fuji 3
Empire 10 3
Gala 3
Honeycrisp 4
Elstar 3
Marshall McIntosh 10 3
Cripps Pink 3 9
Granny Smith 3 8
Jonathan 3
Ralls Janet 3
Delicious 3
Discovery 26 3
Prima 10 8
821 10 13
Fiesta 3
Ingrid Marie 3
Idared 3
Esopus Spitzenburg 3
Braeburn 3
Sansa 3
Lodi 10 3
James Grieve 3
Cripps Red 3
Burgundy 3 8
Akane 3
Ambrosia 3
Aurora Golden Gala 3
Beacon 10 3
Ben Davis 3 8
Cameo 3
Chinook 3
Clivia 3
Co-op 17 15 3
Co-op 18 3 5
Dayton 10 3 4
Delblush 3
Delcorf 3
Delorgue 3
Dolgo 15 36
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 3 4
Early Cortland 10 3
Empress 10
F2 26829-2-2 10 8
Fantazja 10 4
Fireside 10 4
Fortune 11 3
Frostbite 3 4
Ginger Gold 10 3
GMAL 4327 30 5
GMAL 4328 10 8
GMAL 4329 10 3
GMAL 4332 10 8
Goodland 10 3
Haralson 3 4
Honeygold 3
Hudson 10 3
Jersey Black 17 8
Jonamac 10 3
Keepsake 4 5
Kerr 15 4
Lady Williams 3 9
Liberty 4 8
Linda 4 9
Longfield 4 8
Macoun 10 8
Malinda 10 3
Melba 10 3
Melrose 3
MN 1627 3 4
MN 1628 3 4
MN 1691 10 4
MN 1706 10 5
MN 1708 3 4
MN 1760 3
MN 1764 3
MN 1789 4
MN 1802 4
MN 1836 3 4
MN 1837 10 3
MN 1839 10 4
MN 1888 10 4
MN 1899 4
MN 1940 10 4
MN 2016 3
AA-44 10 4
Monroe 11 3
Montgomery 10 16
Nicola 3
NJ 31 5
NJ 53 10 3
Oriole 3
PRI 14-126 10 3
PRI 14-510 3 8
PRI 1661-2 3
PRI 54-12 10 4
PRI 855-102 3
Primula 10 3
Raritan 10 8
Regent 3 4
Russian Seedling 10
Sawa 10 4
Sciros 3
Sharon 10 3
Silken 3
Wildung 10 3
Splendour 3
State Fair 3
NJ 55 3
Co-op 29 11 3
Sunrise 3
Sweet Sixteen 4 5
Topaz 10 3
Vista Bella 10 5
Wealthy 3 4
Winesap 3 8
Winter Banana 11
Yellow Newtown 3 8
Yellow Transparent 3 9
0407-0001 3
0407-0005 3
0407-0006 3
0407-0007 3
0407-0008 3
0408-0003 10 3
0408-0004 10 3
0408-0005 3
0408-0007 3
0408-0008 3
0408-0010 3
0408-0011 10 3
0408-0014 10 3
0408-0015 10 3
0409-0022 3 4
0409-0024 3 4
0409-0028 3 4
0409-0030 3 4
0409-0032 3 4
0409-0035 3 4
0409-0036 3 4
0409-0038 3 4
0409-0039 3 4
0409-0040 3 4
0409-0043 3 4
0409-0045 3 4
0410-0002 3 8
0410-0003 3 8
0410-0005 3
0410-0006 3
0410-0010 3
0410-0011 3 8
0410-0012 3 8
0410-0013 3 8
0410-0015 3
0410-0017 3 8
0410-0018 3
0414-0010 3 4
0414-0015 3 4
0414-0017 3 4
0414-0018 3 4
0414-0019 3 4
0414-0020 3 4
0414-0021 3 4
0415-0001 10 4
0415-0004 10 4
0415-0005 3 4
0415-0011 3 4
0415-0012 10 4
0415-0013 10 4
0415-0014 3 4
0415-0016 10 4
0415-0017 3 4
0415-0019 3 4
0415-0020 3 4
0415-0025 10 4
AE_HCxJonf-145 3 4
AE_HCXJonf-148 4 5
AE_HCXJonf-162 3 4
AE_HCXJonf-168 3 4
AE_HCxJonf-175 3 4
AE_HCxJonf-183 4 5
AE_HCxJonf-185 3 4
AE0118-237 3 4
AE0118-238 4
AE0118-239 10 4
AE0118-240 3 4
AE0118-243 4
AE0118-244 4
AE0118-245 4
AE0118-246 3 4
AE0118-249 3 4
AE0206-159 3
AE0206-160 3
AE0206-161 3
AE0206-162 3
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3 4
AE0206-167 3
AE0206-168 3 4
AE0206-169 3
AE0206-170 3
AE0210-146 10 3
AE0210-147 3
AE0210-149 3
AE0210-150 3
AE0210-151 3
AE0210-152 3 4
AE0210-153 10 3
AE0210-154 3
AE0210-157 10 3
AE0210-158 10 3
AE0210-159 10 3
AE0210-162 10 3
AE0210-163 3
AE0210-164 10 3
AE0210-165 10 3
AE0210-166 3
AE0210-168 10 3
AE0210-169 10 3
AE0210-170 10 3
AE0210-171 3
AE0210-172 10 3
AE0210-173 10 3
AE0210-174 3
AE0213-175 10 8
AE0213-176 10
AE0213-177 10
AE0213-178 10 8
AE0213-179 3 8
AE0213-180 10 8
AE0213-181 10
AE0213-182 10 3
AE0213-183 3 8
AE0213-186 3 8
AE0213-187 3 8
AE0213-193 10
AE0213-194 10
AE0213-195 10 8
AE0213-196 3 8
AE0213-197 3 8
AE0213-198 10 3
AE0213-199 10 8
AE0213-200 10
AE0213-201 10
AE0213-202 10
AE0213-205 10
AE0213-206 10 3
AE0251-323 3 4
AE0251-325 3 5
AE0251-327 3 4
AE0251-329 3 4
AE0251-330 3 4
AE0251-331 3 5
AE0251-342 3 5
AE0251-343 3 4
AE0406-239 3 4
AE0406-254 3 4
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 3 4
AE0406-264 3 4
AE0406-266 3 4
AE0406-271 3 4
AE0406-274 3 4
AE0406-278 3 4
AE0406-281 3 4
AE0406-286 3 4
AE0406-288 3 4
AE0406-289 3 4
AE0406-294 3 4
AE0406-298 3 4
Minneiska 3 4
NJ 303955 3
PRI 612-1 10 3
Arlet 3
Co-op 39 30 41
Pinova 3
Scired 3
Scifresh 3
0409-0025 3 4
0409-0026 3 4
0409-0027 3 4
0409-0031 3 4
0409-0033 3 4
0409-0047 3 4
G-14-050 3
G-14-052 3
G-14-054 3
G-14-055 3
G-14-056 3
G-14-057 3
G-14-059 3
G-14-060 3
G-14-061 3
G-14-062 3
G-14-064 3
G-14-065 3
G-14-069 3
G-14-067 3
G-14-068 3
G-14-071 3
G-14-073 3
G-14-074 3
G-14-075 3
G-14-076 3
G-14-077 3
G-14-078 3
G-14-080 3
G-09-232 3
G-09-233 3
G-09-234 10 3
G-09-235 3
G-09-236 3
G-09-237 3
G-09-238 3
G-09-239 10 3
G-09-240 3
G-09-241 10 3
G-09-242 10 3
G-09-243 3
G-09-245 10 3
G-09-246 3
G-09-258 10 3
G-09-259 10 3
G-09-260 10 3
G-09-261 3
G-09-262 10 3
G-09-263 3
G-09-264 3
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 3
0408-0021 10 3
Wijcik McIntosh 10 3
Beauty of Bath 26
Priam 3
Northern Spy 3 5
Co-op 15 11 3
MN 1702 4
WA 2 3
WA 5 3
Pitmaston Pineapple 3
0411-0011 3
0411-0017 3
0411-0023 10 3
AE0250-086 3 4
AE0250-087 3 5
AE0250-089 3 4
AE0250-090 3 5
AE0250-092 3 4
AE0250-093 3 5
AE0250-094 3 5
AE0250-095 3 5
Sonya 3
Co-op 38 3
AE0250-096 10 4
AE0250-327 3 4
Co-op 30 10 3
Jonagrimes 3
AE0211-036 3 5
G-07-039 10 3
PRI 14-152 10 3
PRI 47-176 3 8
G-07-041 3
BC-8S-27-43 3
AE0250-091 30 4
AE0250-097 4 5
AE0250-325 30 4
AE0250-326 30 4
AE0250-329 30 4
AE0250-333 4 5
AE0250-334 30 4
AE0250-335 4 5
AE0250-336 4 5
AE0250-338 4 5
AE0250-341 4 5
AE0211-038 3 8
AE0211-043 10 8
AE0211-045 10 8
AE0211-051 10
G-07-010 3 8
G-07-014 3 8
G-07-015 3 8
G-07-019 3
G-07-020 3 8
G-07-024 3
G-07-032 3
G-07-033 3 8
G-07-034 3 8
G-07-035 3 8
G-07-044 3 8
AE0211-053 3 4
AE0211-054 10 4
AE0250-088 4
AE0250-324 3 4
AE0250-328 3 4
AE0250-331 3 4
AE0250-332 3 4
AE0250-337 4
AE0250-339 4
Minnewashta 3 4
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3
Lu1-11-013 3
Lu1-11-016 3
Lu1-11-017 3
Lu1-11-018 3
NJ 90 10 3
Lord Lambourne 11 3
Antonovka GH 3
Grimes Golden 3
Kidds Orange Red 3
Malus baccata Hansen #2 10 15
Malus baccata Jackii 43 8
Summerred 3
William's Pride 3 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-10-37Apple-RosBREED-3.9K-20191051.3251.32
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243
RosBREEDSNP_SNP_AG_24271581_Lg10_RosCOS3104_MAF30_568608_exon1-ABnull--ABABAA-Anull-B-AAA---A-BAA--BAAAA-AABAnull
RosBREEDSNP_SNP_AG_24294786_Lg10_RosCOS3104_MAF30_1641181_exon2AABABABBABAB-BAAA-----ABAB-BAAABA-AB-AABBB
RosBREEDSNP_SNP_CT_24240524_Lg10_RosCOS3104_MAF20_MDP0000138076_exon3-BABBBBBBABB-BB-BBBBB-BAB-ABBBBAB-----AAAB
RosBREEDSNP_SNP_GT_24273907_Lg10_RosCOS3104_MAF50_1653415_exon2BBAAABAAAAAAABBAA-BA-----AA-AABAB-ABBBABAA
RosBREEDSNP_SNP_TC_24308077_Lg10_RosCOS3104_MAF10_1644319_exon3-ABAAAAAAA---AA-AAAAAAABA-BAB---------AAAA
Alignments
Feature NameTypeLocationAnalysis
Chr10 chromosome Chr10:30377587..30443529. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation