Mdo-HB-10-2

Haplotype Block Overview
Name Mdo-HB-10-2
Species Malus x domestica
Stock Haplotype [view all 432]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 13 6
Jonafree 4
Redfree 5 6
Spartan 4 7
Wagener 6
Worcester Pearmain 15 9
Tsugaru 4
Golden Delicious 4
Fuji 7 9
Empire 4 7
Gala 4
Honeycrisp 4 5
Elstar 4
Marshall McIntosh 4
Cripps Pink 4
Granny Smith 10 4
Jonathan 4 6
Ralls Janet 3 9
Delicious 6 7
Discovery 4 9
Prima 10 6
821 10 13
Fiesta 4
Ingrid Marie 4
Idared 4 6
Esopus Spitzenburg 4 6
Braeburn 4 6
Sansa 4 9
Lodi 7 9
James Grieve 4 6
Cripps Red 4
Burgundy 4 6
Akane 4 9
Ambrosia 4 6
Aurora Golden Gala 4
Beacon 4
Ben Davis 10 4 6
Cameo 4 7
Chinook 4
Clivia 4
Co-op 17 4
Co-op 18 4
Dayton 4 6
Delblush 4
Delorgue 4 5
Dolgo 5 8
Geheimrat Dr. Oldenburg 4 9
Duchess of Oldenburg 4 5
Early Cortland 4 6 9
Empress 4 6
F2 26829-2-2 10 13
Fantazja 4 7
Fireside 5 6
Fortune 4
Frostbite 4 6
Ginger Gold 4 7
GMAL 4327 13 5
GMAL 4328 13 5
GMAL 4329 5 6
GMAL 4332 5
Goodland 4 5
Haralson 4 5
Honeygold 4
Hudson 4
Jersey Black 3 9
Jonamac 4
Keepsake 4
Kerr 5
Lady Williams 10 4
Liberty 4 5
Linda 6 7
Liveland Raspberry 4 5
Longfield 5 6
Macoun 4 9
Malinda 4
Mantet 2 5
Melba 4 5
Melrose 6
MN 1627 4 5
MN 1628 4
MN 1691 4 5
MN 1706 27 28
MN 1708 4
MN 1764 4
MN 1789 4 5
MN 1802 4 6
MN 1836 4
MN 1837 4 5
MN 1839 4 6
MN 1888 4 5
MN 1899 4 5
MN 1940 4 6
MN 2016 4 6
AA-44 4 6
Monroe 13 6
Montgomery 6 9
Nicola 4 6
NJ 31 4
NJ 53 5 6
Oriole 4 5
PCF-3-120 4
PRI 14-126 13 4
PRI 14-510 10 4
PRI 16-144 4
PRI 1661-2 4 6
PRI 54-12 10 5
PRI 855-102 4
Primula 4 5
Raritan 15
Regent 4 5
Russian Seedling 28 5
Sawa 5 7
Sciros 4
Sharon 4
Silken 4
Wildung 4 5
Splendour 4 6
State Fair 4 5
NJ 55 4
Co-op 29 13 4
Sunrise 4
Sweet Sixteen 4
Topaz 13 4
Vista Bella 5 6
Wealthy 5 6
Winesap 4 7
Winter Banana 13 4
Yellow Newtown 13 33
Yellow Transparent 4 7
0407-0001 4 6
0407-0005 4 6
0407-0006 4 6
0407-0007 4 6
0407-0008 4
0408-0003 4 6
0408-0004 4 6
0408-0005 4 6
0408-0007 4 6
0408-0008 4 6
0408-0010 4 6
0408-0011 4 6
0408-0014 4 6
0408-0015 4 6
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4
0409-0035 4 5
0409-0036 4 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 4
0410-0003 10 4
0410-0005 10 4
0410-0006 10 4
0410-0010 10 4
0410-0011 4
0410-0012 4
0410-0013 4
0410-0015 4
0410-0017 10 4
0410-0018 4
0414-0010 4
0414-0015 4
0414-0017 4 6
0414-0018 5 6
0414-0019 4 5
0414-0020 5 6
0414-0021 4 5
0415-0001 4 6
0415-0004 4 6
0415-0005 4 6
0415-0011 4 6
0415-0012 4 6
0415-0013 5 6
0415-0014 4 5
0415-0016 4 6
0415-0017 5 6
0415-0019 5 6
0415-0020 5 6
0415-0025 5 6
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 4 5
AE_HCXJonf-162 4
AE_HCXJonf-168 4
AE_HCxJonf-175 4
AE_HCxJonf-183 4 5
AE_HCxJonf-185 4 5
AE0118-237 4 5
AE0118-238 4 5
AE0118-239 4 6
AE0118-240 4 5
AE0118-243 5
AE0118-244 4
AE0118-245 4
AE0118-246 4 5
AE0118-249 5
AE0206-159 5 6
AE0206-160 5 6
AE0206-161 5 6
AE0206-162 5 6
AE0206-163 4 6
AE0206-164 5 6
AE0206-165 4 5
AE0206-167 4 5
AE0206-168 4 5
AE0206-169 4
AE0206-170 4 5
AE0210-146 4 6
AE0210-147 4 6
AE0210-149 4 5
AE0210-150 4 6
AE0210-151 4 5
AE0210-152 4 5
AE0210-153 4 5
AE0210-154 4 6
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 4 6
AE0210-162 4 5
AE0210-163 4 6
AE0210-164 4 5
AE0210-165 4 5
AE0210-166 4 6
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 6
AE0210-171 4 5
AE0210-172 4 6
AE0210-173 4 5
AE0210-174 4 6
AE0213-175 5 7
AE0213-176 5 7
AE0213-177 5 7
AE0213-178 5 7
AE0213-179 5 7
AE0213-180 5 7
AE0213-181 5 7
AE0213-182 4 5
AE0213-183 4 5
AE0213-186 5 7
AE0213-187 5 7
AE0213-190 5 7
AE0213-193 5 7
AE0213-194 5 7
AE0213-195 5 7
AE0213-196 5 7
AE0213-197 5 7
AE0213-198 4
AE0213-199 5 7
AE0213-200 4 5
AE0213-201 5 7
AE0213-202 5 7
AE0213-205 5 7
AE0213-206 5 7
AE0251-323 4 6
AE0251-325 4 6
AE0251-327 4 6
AE0251-329 4 6
AE0251-330 4 6
AE0251-331 4 6
AE0251-342 4
AE0251-343 4 6
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 4
AE0406-259 4
AE0406-263 4
AE0406-264 4 5
AE0406-266 4 5
AE0406-271 4 5
AE0406-274 4
AE0406-278 4
AE0406-281 4
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4
AE0406-294 4 5
AE0406-298 4
Minneiska 5
NJ 303955 4
PRI 612-1 13 6
Arlet 4 6
Co-op 39 4 6
Pinova 4
Scired 4 6
Scifresh 4
0409-0025 4
0409-0026 4
0409-0027 4
0409-0031 4 5
0409-0033 4
0409-0047 4 5
G-14-050 4
G-14-052 4
G-14-054 4 9
G-14-055 4 9
G-14-056 4
G-14-057 4
G-14-059 4 9
G-14-060 4
G-14-061 4
G-14-062 4
G-14-064 4
G-14-065 4
G-14-069 4
G-14-067 4 9
G-14-068 4
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4 9
G-14-076 4
G-14-077 4
G-14-078 4 9
G-14-080 4 9
G-09-232 4 6
G-09-233 4
G-09-234 4
G-09-235 4
G-09-236 6 7
G-09-237 6 7
G-09-238 4 6
G-09-239 4 7
G-09-240 6 7
G-09-241 4 6
G-09-242 4
G-09-243 6 7
G-09-245 4
G-09-246 4
G-09-258 6 7
G-09-259 6 7
G-09-260 4 7
G-09-261 4 7
G-09-262 6 7
G-09-263 4 7
G-09-264 4 6
G-09-265 4
G-09-266 6 7
G-09-267 4
G-09-268 4 7
0408-0021 4 6
Wijcik McIntosh 4
Beauty of Bath 4
Priam 4
Northern Spy 4
Co-op 15 13 6
MN 1702 4 5
WA 2 4 6
WA 5 4 6
Pitmaston Pineapple 4
0411-0011 4 6
0411-0017 6
0411-0023 6
AE0250-086 4 6
AE0250-087 4
AE0250-089 4 6
AE0250-090 4 6
AE0250-092 4 6
AE0250-093 4
AE0250-094 4
AE0250-095 4 6
Sonya 4
Co-op 38 4
AE0250-096 4 5
AE0250-327 4 5
Co-op 30 6
Jonagrimes 4 5
AE0211-036 4 5
G-07-039 4 9
PRI 14-152 13 4
PRI 47-176 10 6
G-07-041 4 9
BC-8S-27-43 4 6
AE0250-091 13 4
AE0250-097 4 5
AE0250-325 13 4
AE0250-326 4 5
AE0250-329 5
AE0250-333 5
AE0250-334 13 4
AE0250-335 4 5
AE0250-336 5
AE0250-338 4 5
AE0250-341 13 5
AE0211-038 13 7
AE0211-043 13 7
AE0211-045 13 7
AE0211-051 5 7
G-07-010 4 9
G-07-014 4 9
G-07-015 10 4
G-07-019 4 9
G-07-020 4
G-07-024 10 4
G-07-032 10 9
G-07-033 10 4
G-07-034 4 9
G-07-035 4
G-07-044 10 4
AE0211-053 4
AE0211-054 5 7
AE0250-088 4
AE0250-324 5
AE0250-328 5
AE0250-331 4 5
AE0250-332 4 5
AE0250-337 4
AE0250-339 4 5
Minnewashta 4 5
Autumn Crisp 13 4
G-14-066 4
Lu1-11-010 4 7
Lu1-11-013 4 9
Lu1-11-016 4 7
Lu1-11-017 4 9
Lu1-11-018 4 7
NJ 90 4 6
Lord Lambourne 15 6
Antonovka GH 13
Grimes Golden 3 4
Kidds Orange Red 4 7
Malus baccata Hansen #2 4 5
Malus baccata Jackii 13 7
Summerred 4
William's Pride 4 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-10-2Apple-RosBREED-3.9K-20191045.37
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435
RosBREEDSNP_SNP_AC_2440066_Lg10_01909_MAF30_411914_exon1--AABA-AABAA--ABA--AA----BAA-AABBB
RosBREEDSNP_SNP_CT_2443675_Lg10_01909_MAF50_760651_exon1--BAAB-AA--ABABAABABA-A--AB----B-B
RosBREEDSNP_SNP_GT_2479664_Lg10_01909_MAF40_257666_exon1BABAABBBAABBBA--------ABABA-ABAA-B
RosBREEDSNP_SNP_TC_2498716_Lg10_01909_MAF20_320920_exon1AAAAABBBBAAAAAAAA----AB--AAABBBAAA
Alignments
Feature NameTypeLocationAnalysis
Chr10 chromosome Chr10:2973325..3037910. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation