Mdo-HB-02-4a

Haplotype Block Overview

Name	Mdo-HB-02-4a
Species	Malus x domestica
Stock Haplotype	[view all 420]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	4
Rome Beauty Law	3 7
Jonafree	3
Redfree	3 4
Spartan	2
Wagener	3 4
Worcester Pearmain	2 8
Golden Delicious	2 3
Fuji	2 3
Empire	2 3
Gala	2 3
Honeycrisp	2
Elstar	2 3
Marshall McIntosh	2 3
Cripps Pink	2
Granny Smith	3
Jonathan	3 9
Delicious	2 9
Discovery	15 2
Prima	3
821	11
Fiesta	3 4
Ingrid Marie	2 4
Idared	3 9
Esopus Spitzenburg	4 9
Braeburn	2 4
Sansa	2 3
Lodi	4 9
James Grieve	4
Cripps Red	2 3
Burgundy	2 3
Akane	2 3
Ambrosia	2 9
Aurora Golden Gala	2 9
Beacon	4 9
Ben Davis	2 3 4
Cameo	2
Chinook	2 9
Clivia	3 4
Co-op 17	3
Co-op 18	3
Dayton	3 4
Delblush	2
Delcorf	14 2
Delorgue	2 3
Dolgo	2 4
Geheimrat Dr. Oldenburg	3 4
Duchess of Oldenburg	3 4
Early Cortland	2 3 9
Empress	2 9
F2 26829-2-2	11 3
Fantazja	3 9
Fireside	2 9
Fortune	3 4
Frostbite	3
Ginger Gold	3 4
GMAL 4327	3 9
GMAL 4328	11 9
GMAL 4329	2 9
GMAL 4332	2 9
Goodland	2 4
Haralson	9
Honeygold	2 9
Hudson	2
Jonamac	2 3
Keepsake	2 3
Kerr	4 9
Lady Williams	2 3
Liberty	3 9
Linda	9
Liveland Raspberry	16 3
Longfield	11 9
Macoun	3
Malinda	9
Melba	16 3
Melrose	2 3
MN 1627	2 3
MN 1628	2 3
MN 1691	4 9
MN 1706	4
MN 1708	3
MN 1760	4 9
MN 1764	3 4
MN 1789	2 4
MN 1802	3
MN 1836	3 4
MN 1837	3 4
MN 1839	2
MN 1888	3 9
MN 1899	2
MN 1940	2 9
MN 2016	2 9
AA-44	2 3
Monroe	3 9
Montgomery	3 9
Nicola	2 9
NJ 31	3
NJ 53	11 9
Oriole	3 4
PRI 14-126	3
PRI 14-510	3
PRI 16-144	3
PRI 1661-2	3
PRI 855-102	3
Primula	3
Raritan	3 9
Regent	2 9
Rubin	3
Russian Seedling	11 9
Sawa	3 9
Sciros	2 9
Sharon	2 4
Silken	9
Wildung	2 4
Splendour	3 9
State Fair	4 9
NJ 55	2 4
Co-op 29	2 3
Sunrise	3 9
Sweet Sixteen	2 3
Topaz	3
Vista Bella	4 9
Wealthy	4 9
Winesap	3 9
Winter Banana	19 2
Yellow Newtown	2 4
Yellow Transparent	2 4
0407-0001	2 9
0407-0005	9
0407-0006	2 9
0407-0007	2 9
0407-0008	2 9
0408-0003	3 9
0408-0004	2 3
0408-0005	3 9
0408-0007	9
0408-0008	2 3
0408-0010	2 3
0408-0011	2 9
0408-0014	9
0408-0015	2 3
0409-0022	2
0409-0024	2 9
0409-0028	2 9
0409-0030	2
0409-0032	2 9
0409-0035	2
0409-0036	2 9
0409-0038	2 9
0409-0039	2
0409-0040	2
0409-0043	2
0409-0045	2 9
0410-0002	3 9
0410-0003	2 3
0410-0005	3 9
0410-0006	3 9
0410-0010	3 9
0410-0011	3 9
0410-0012	3 9
0410-0013	2 3
0410-0015	3 9
0410-0017	2 3
0410-0018	3 9
0414-0010	2 9
0414-0015	2
0414-0017	2
0414-0018	2 3
0414-0019	2 9
0414-0020	2 3
0414-0021	2 9
0415-0001	2 9
0415-0004	2 3
0415-0005	2 9
0415-0011	2 9
0415-0012	2 3
0415-0013	2 3
0415-0014	2 4
0415-0016	2 9
0415-0017	2 3
0415-0019	2 9
0415-0020	2 3
0415-0025	2 9
AE_HCxJonf-145	2 3
AE_HCXJonf-148	2 3
AE_HCxJonf-157	2 3
AE_HCXJonf-162	2 3
AE_HCXJonf-168	2
AE_HCxJonf-175	2 3
AE_HCxJonf-183	2 3
AE_HCxJonf-185	2 3
AE0118-237	2
AE0118-238	2 9
AE0118-239	2
AE0118-240	2
AE0118-243	2 9
AE0118-244	2 9
AE0118-245	2 9
AE0118-246	2 9
AE0118-249	2 9
AE0206-159	2 4
AE0206-160	2 4
AE0206-161	2 4
AE0206-162	2 9
AE0206-163	2 4
AE0206-164	3 4
AE0206-165	2 9
AE0206-167	3 9
AE0206-168	2 4
AE0206-169	3 4
AE0206-170	2 4
AE0210-146	2 3
AE0210-147	2 3
AE0210-149	2 9
AE0210-150	9
AE0210-151	2 9
AE0210-152	3 9
AE0210-153	3 9
AE0210-154	2 3
AE0210-157	9
AE0210-158	2 3
AE0210-159	3 9
AE0210-162	2 9
AE0210-163	3 9
AE0210-164	3 9
AE0210-165	3 9
AE0210-166	2 9
AE0210-168	2 9
AE0210-169	2 9
AE0210-170	9
AE0210-171	3 9
AE0210-172	2 3
AE0210-173	3 9
AE0210-174	9
AE0213-175	4 9
AE0213-177	2 3
AE0213-178	2 3
AE0213-179	2 3
AE0213-180	4 9
AE0213-181	2 3
AE0213-183	2 3
AE0213-186	3 9
AE0213-187	4 9
AE0213-190	3 9
AE0213-193	2 3
AE0213-194	2 3
AE0213-195	4 9
AE0213-196	2 3
AE0213-197	3 9
AE0213-198	11 4
AE0213-199	2 3
AE0213-200	2 3
AE0213-201	2 3
AE0213-202	2 3
AE0213-206	2 3
AE0251-323	3
AE0251-327	2 3
AE0251-329	2 3
AE0251-330	2
AE0251-331	2 3
AE0251-342	2 3
AE0251-343	2 3
AE0406-239	2 9
AE0406-254	2 9
AE0406-258	2 9
AE0406-259	2 9
AE0406-263	2 9
AE0406-264	2 9
AE0406-266	2 9
AE0406-271	2
AE0406-274	2 9
AE0406-278	2 9
AE0406-281	2 9
AE0406-286	2 9
AE0406-288	2 9
AE0406-289	2 9
AE0406-294	2 9
AE0406-298	2 9
Minneiska	2 9
NJ 303955	4
PRI 612-1	3 9
Arlet	2 9
Co-op 39	2 3
Pinova	2 4
Scired	2 3
Scifresh	2 4
0409-0025	2
0409-0026	2 9
0409-0027	2
0409-0031	2
0409-0033	2 9
0409-0047	2
G-14-050	2
G-14-052	2 4
G-14-054	2 4
G-14-055	2 4
G-14-056	2
G-14-057	2 4
G-14-059	2 4
G-14-060	2
G-14-061	2 4
G-14-062	2
G-14-064	2 4
G-14-065	2
G-14-069	2
G-14-067	2
G-14-068	2
G-14-071	2
G-14-073	2 4
G-14-074	2
G-14-075	2 4
G-14-076	2 4
G-14-077	2
G-14-078	2
G-14-080	2 4
G-09-232	4
G-09-233	2 4
G-09-234	4
G-09-235	2 3
G-09-236	2 3
G-09-237	3 4
G-09-238	2 3
G-09-239	3 4
G-09-240	3 4
G-09-241	2 4
G-09-242	3 4
G-09-243	3 4
G-09-245	3 4
G-09-246	4
G-09-258	4
G-09-259	3 4
G-09-260	2 3
G-09-261	4
G-09-262	2 3
G-09-263	3 4
G-09-264	3 4
G-09-265	2 4
G-09-266	4
G-09-267	3 4
G-09-268	2 3
0408-0021	3 9
Wijcik McIntosh	11 9
Beauty of Bath	15
Priam	3 9
Northern Spy	2 4
Co-op 15	3
MN 1702	2 3
WA 2	2 9
WA 5	3
Pitmaston Pineapple	9
0411-0011	3 9
0411-0017	9
0411-0023	2 3
AE0250-086	2 3
AE0250-087	2 3
AE0250-089	3
AE0250-090	2 3
AE0250-092	3
AE0250-093	2
AE0250-094	2 3
AE0250-095	2 3
Sonya	2
Co-op 38	2 3
AE0250-096	3 4
AE0250-327	3 9
Co-op 30	3 9
AE0211-036	2 4
G-07-039	2 3
G-07-041	3
BC-8S-27-43	2 3
AE0250-091	2 3
AE0250-097	2 3
AE0250-325	2 9
AE0250-326	2 3
AE0250-329	2 3
AE0250-333	2 3
AE0250-334	2 9
AE0250-335	2 3
AE0250-336	2 3
AE0250-338	2 9
AE0250-341	2 3
AE0211-038	3 9
AE0211-043	11 4
AE0211-045	3 9
AE0211-051	3 9
G-07-010	2 3
G-07-014	2 3
G-07-015	2 3
G-07-019	2 3
G-07-020	2 3
G-07-024	2 3
G-07-032	3
G-07-033	3
G-07-035	3
G-07-044	2 3
AE0211-053	3 4
AE0211-054	3 9
AE0250-088	2 9
AE0250-324	2 9
AE0250-328	2 9
AE0250-331	2 9
AE0250-332	2 9
AE0250-337	2 4
AE0250-339	2 4
Minnewashta	4 9
Autumn Crisp	2 9
G-14-066	2
Lu1-11-010	2 3
Lu1-11-013	3
Lu1-11-016	3
Lu1-11-017	3
Lu1-11-018	2 3
NJ 90	2 3
Lord Lambourne	4 8
Antonovka GH	11 9
Kidds Orange Red	2 4
Malus baccata Hansen #2	2
Malus baccata Jackii	2
Summerred	2 3
William's Pride	4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-02-4a	Apple-RosBREED-3.9K-2019	2	2.56	2.56

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20
GDsnp00959	B	A	B	A	B	B	A	B	-	A	B	A	-	-	-	B	A	B	A
RosBREEDSNP_SNP_AG_2532606_Lg2_00959_MAF40_158655_exon2	A	A	B	-	-	-	-	A	A	A	A	A	A	A	B	B	B	B	B
RosBREEDSNP_SNP_CT_2607533_Lg2_226032_MAF30_226032_exon1	A	B	A	B	A	-	-	B	A	A	-	-	B	-	A	-	A	B	B

Alignments

Feature Name	Type	Location	Analysis
Chr02	chromosome	Chr02:1562245..1792215.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation