Mdo-HB-02-27

Haplotype Block Overview
Name Mdo-HB-02-27
Species Malus x domestica
Stock Haplotype [view all 431]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 14
Rome Beauty Law 14 9
Jonafree 12 14
Redfree 29 74
Spartan 12 5
Wagener 21 9
Worcester Pearmain 40 46
Tsugaru 5
Golden Delicious 4 5
Fuji 12 14
Empire 12 9
Gala 12 5
Honeycrisp 4
Elstar 4 5
Marshall McIntosh 5 9
Cripps Pink 4 6
Granny Smith 15 16
Jonathan 16 5
Ralls Janet 14 2
Delicious 12
Discovery 40 41
Prima 5
Fiesta 14 5
Ingrid Marie 14 4
Idared 5 9
Esopus Spitzenburg 16 9
Braeburn 12 14
Sansa 40 5
Lodi 29 4
James Grieve 14 15
Cripps Red 5 6
Burgundy 14 4
Akane 40 5
Ambrosia 12 4
Aurora Golden Gala 12 5
Beacon 4 41
Ben Davis 12 5 9
Cameo 12 4
Chinook 12
Clivia 14 4
Co-op 17 12 9
Co-op 18 12 14
Dayton 21 4 5
Delblush 12 5
Delcorf 4
Delorgue 4 5
Dolgo 21 52
Geheimrat Dr. Oldenburg 4 40
Duchess of Oldenburg 4 6
Early Cortland 12 4 5
Empress 21 5
F2 26829-2-2 12 9
Fantazja 21 5
Fireside 4 6
Fortune 21 5
Frostbite 4 5
Ginger Gold 4 5
GMAL 4327 4 41
GMAL 4328 30 4
GMAL 4329 30 40
GMAL 4332 30 4
Goodland 4 40
Haralson 5 9
Honeygold 4 5
Hudson 12 4
Jersey Black 22 29
Jonamac 5
Keepsake 4 5
Kerr 21 9
Lady Williams 15 6
Liberty 5
Linda 21 6
Liveland Raspberry 4 53
Longfield 29 4
Macoun 29 5
Malinda 41 9
Melba 53 9
Melrose 12 5
MN 1627 4 5
MN 1628 4
MN 1691 4 6
MN 1706 30 60
MN 1708 4 5
MN 1760 4 61
MN 1764 4 9
MN 1789 4 5
MN 1802 4 5
MN 1836 21 4
MN 1837 4 6
MN 1839 4 5
MN 1888 4 6
MN 1899 4 5
MN 1940 5
MN 2016 5
AA-44 5
Monroe 14 16
Montgomery 14 29
Nicola 12 5
NJ 31 14
NJ 53 21
Oriole 4 6
PRI 14-126 12 5
PRI 14-510 12 5
PRI 16-144 12
PRI 1661-2 12 5
PRI 54-12 5 9
PRI 855-102 12
Primula 12 53
Raritan 21
Regent 5
Rubin 5
Russian Seedling 30 4
Sawa 12 21
Sciros 12
Sharon 5 6
Silken 4 9
Wildung 4 5
Splendour 12 5
State Fair 21 5
NJ 55 14 4
Co-op 29 5
Sunrise 21 9
Sweet Sixteen 4
Topaz 40 5
Vanda 40
Vista Bella 21
Wealthy 5 6
Winesap 11 12
Winter Banana 4 5
Yellow Newtown 5 9
Yellow Transparent 4 9
0407-0001 4 5
0407-0005 12 5
0407-0006 12 4
0407-0007 12 4
0407-0008 5
0408-0003 12 16
0408-0004 12 5
0408-0005 12
0408-0007 12 16
0408-0008 12 5
0408-0010 12 5
0408-0011 12 5
0408-0014 12 16
0408-0015 16 5
0409-0022 4 5
0409-0024 12 4
0409-0028 12 4
0409-0030 4 5
0409-0032 12 4
0409-0035 4 5
0409-0036 12 4
0409-0038 12 4
0409-0039 4 5
0409-0040 12 4
0409-0043 12 4
0409-0045 4 5
0410-0002 15 5
0410-0003 15 5
0410-0005 12 15
0410-0006 12 16
0410-0010 12 16
0410-0011 12 15
0410-0012 12 16
0410-0013 15 5
0410-0015 12 16
0410-0017 15 5
0410-0018 12 15
0414-0010 4 5
0414-0015 4
0414-0017 4
0414-0018 12 4
0414-0019 4 5
0414-0020 12 4
0414-0021 4 5
0415-0001 16 4
0415-0004 16 4
0415-0005 16 4
0415-0011 16 4
0415-0012 12 4
0415-0013 12 4
0415-0014 14 4
0415-0016 16 4
0415-0017 12 4
0415-0019 16 4
0415-0020 12 4
0415-0025 16 4
AE_HCxJonf-145 12 4
AE_HCXJonf-148 12 4
AE_HCXJonf-162 12 4
AE_HCXJonf-168 4 5
AE_HCxJonf-175 14 4
AE_HCxJonf-183 14 4
AE_HCxJonf-185 12 4
AE0118-237 4 5
AE0118-238 4 5
AE0118-239 4
AE0118-240 4 5
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4 5
AE0118-249 4 5
AE0206-159 12 4
AE0206-160 12 4
AE0206-161 5
AE0206-162 12 5
AE0206-163 4 5
AE0206-164 12 4
AE0206-165 12 5
AE0206-167 12 4
AE0206-168 12 5
AE0206-169 4 5
AE0206-170 12 5
AE0210-146 21 40
AE0210-147 21 30
AE0210-149 21 30
AE0210-150 21 40
AE0210-151 21 30
AE0210-152 4 9
AE0210-153 40 9
AE0210-154 30 9
AE0210-157 21 40
AE0210-158 21 30
AE0210-159 40 9
AE0210-162 21 30
AE0210-163 40 9
AE0210-164 30 9
AE0210-165 40 9
AE0210-166 21 30
AE0210-168 21 30
AE0210-169 21 30
AE0210-170 40 9
AE0210-171 21 30
AE0210-172 21 40
AE0210-173 40 9
AE0210-174 21 40
AE0213-175 30 4
AE0213-176 30 4
AE0213-177 30 4
AE0213-178 30 4
AE0213-179 4
AE0213-180 4
AE0213-181 30 4
AE0213-182 30 4
AE0213-183 30 5
AE0213-186 30 5
AE0213-187 4
AE0213-190 4 5
AE0213-193 30 5
AE0213-194 30 5
AE0213-195 4
AE0213-196 30 5
AE0213-197 30 5
AE0213-198 30 5
AE0213-199 30 4
AE0213-200 30 5
AE0213-201 30 4
AE0213-202 4 5
AE0213-205 30 4
AE0213-206 30 5
AE0251-323 4 5
AE0251-325 12 4
AE0251-327 12 4
AE0251-329 4 5
AE0251-330 12 4
AE0251-331 4 5
AE0251-342 12 4
AE0251-343 4 5
AE0406-239 4 9
AE0406-254 4 9
AE0406-258 4 9
AE0406-259 4 9
AE0406-263 4
AE0406-264 4
AE0406-266 4
AE0406-271 4
AE0406-274 4
AE0406-278 4
AE0406-281 4 9
AE0406-286 4
AE0406-288 4
AE0406-289 4 9
AE0406-294 4 9
AE0406-298 4
Minneiska 4 5
NJ 303955 14
PRI 612-1 12
Arlet 4 5
Co-op 39 4 5
Pinova 14 4
Scired 12
Scifresh 14 5
0409-0025 4 5
0409-0026 12 4
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4
G-14-052 14 4
G-14-054 14
G-14-055 14
G-14-056 14
G-14-057 14 4
G-14-059 14 4
G-14-060 14 4
G-14-061 4
G-14-062 14 4
G-14-064 14
G-14-065 14 4
G-14-069 14 4
G-14-067 4
G-14-068 14 4
G-14-071 14 4
G-14-073 14 4
G-14-074 4
G-14-075 14
G-14-076 14 4
G-14-077 14 4
G-14-078 4
G-14-080 4
G-09-232 14 4
G-09-233 14 4
G-09-234 14 4
G-09-235 12 4
G-09-236 14 5
G-09-237 14 5
G-09-238 12 4
G-09-239 12 4
G-09-240 12 5
G-09-241 12 4
G-09-242 14 4
G-09-243 12 5
G-09-245 14 5
G-09-246 14 4
G-09-258 14 4
G-09-259 14 5
G-09-260 12 5
G-09-261 14 4
G-09-262 12 4
G-09-263 12 4
G-09-264 14 5
G-09-265 14 5
G-09-266 14 4
G-09-267 12 5
G-09-268 12 5
0408-0021 12
Wijcik McIntosh 4 61
Beauty of Bath 40 41
Priam 12 16
Northern Spy 4 9
Co-op 15 12 9
MN 1702 4 5
WA 2 12
WA 5 12 5
Pitmaston Pineapple 21 40
0411-0011 16 5
0411-0017 16 5
0411-0023 16 5
AE0250-086 12 4
AE0250-087 4 5
AE0250-089 12 4
AE0250-090 4 5
AE0250-092 4 5
AE0250-093 12 4
AE0250-094 12 4
AE0250-095 4 5
Sonya 14 5
Co-op 38 4 9
AE0250-096 4
AE0250-327 5 6
Co-op 30 12 16
Jonagrimes 4 6
AE0211-036 4 5
G-07-039 12 5
PRI 14-152 4 9
PRI 47-176 5 9
G-07-041 14 5
BC-8S-27-43 12 5
AE0250-091 4
AE0250-097 4
AE0250-325 4 41
AE0250-326 4
AE0250-329 4
AE0250-333 4 41
AE0250-334 4
AE0250-335 4
AE0250-336 4 41
AE0250-338 4
AE0250-341 4
AE0211-038 30 5
AE0211-043 30 5
AE0211-051 4 5
G-07-010 15 40
G-07-014 16 40
G-07-015 15 5
G-07-019 15 5
G-07-020 15 40
G-07-024 15 40
G-07-032 16 5
G-07-033 15 5
G-07-034 15 5
G-07-035 16 5
G-07-044 16 40
AE0211-053 4 5
AE0211-054 5
AE0250-088 4 5
AE0250-324 4 5
AE0250-328 4
AE0250-331 4
AE0250-332 4 5
AE0250-337 4
AE0250-339 4 5
Minnewashta 4 5
Autumn Crisp 14 4
G-14-066 4
Lu1-11-010 12 5
Lu1-11-013 14 5
Lu1-11-016 14 5
Lu1-11-017 14 5
Lu1-11-018 14 4
NJ 90 5 9
Lord Lambourne 14 40
Antonovka GH 4 41
Grimes Golden 2 4
Kidds Orange Red 12 14
Malus baccata Hansen #2 80 81
Malus baccata Jackii 82
Summerred 5 76
William's Pride 21 9
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-27Apple-RosBREED-3.9K-2019219.8920.43
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374757677787980818283
GDsnp01005BBBABBABBBBBBBB---ABBABBABBBBBBB--BBBBAB--BAAAABB-BBB--BABBABBB-BABABBBABAAA----B-
RosBREEDSNP_SNP_AG_11505111_Lg2_01005_MAF40_1655071_exon2--AAB--A--B-BAA----A--A-ABBAAAB-ABBABAAAAA---AA--ABAA----AAA-BAAAABAAAAAAAAB--BBBA
RosBREEDSNP_SNP_GA_11542218_Lg2_01005_MAF20_MDP0000234905_exon2--BBBBBABBB-BBBAB-BB--BBBBBBABB-----BBBB-B---BBBB---B--BB-BA--ABBBBBAABAABBB--BBAA
RosBREEDSNP_SNP_TC_11509973_Lg2_01005_MAF30_504806_exon3BAAAAAAABABAABAAAAABAAAAABAAAAAAABAA--AAAAAAAAAAA-ABBBAAAABABBBAAAB---BABAABBAAAAA
RosBREEDSNP_SNP_TC_11512294_Lg2_01005_MAF50_791189_exon1AAAAB--ABBBBBBBBB-AABA-A-BBAABA---BABABBAAABBABAB-BA---BBAAABBA-B--BAABAAABBABBBBA
RosBREEDSNP_SNP_TC_11544405_Lg2_01005_MAF10_1632826_exon1AAAAAAABAAAAAAABB-AAAAAAAAABABA-----AAAA-ABAAAAAA-AAA--AABBBAABAAAAAABAAAAAA--ABBB
RosBREEDSNP_SNP_TC_11546546_Lg2_01005_MAF30_1625890_exon1AAAAB--ABBBAAABAAAAABA-A---AAAAA--AA--BAAAABA-----AAA--ABAAABBA--BBBAA-AABAAABAAAA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:10315789..10367237. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation