Mdo-HB-02-21

Haplotype Block Overview
Name Mdo-HB-02-21
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10
Rome Beauty Law 10 15
Jonafree 10 4
Redfree 11 6
Spartan 4
Wagener 19 5
Worcester Pearmain 11 5
Tsugaru 5 9
Golden Delicious 4 5
Fuji 10 4
Empire 4 6
Gala 4 5
Honeycrisp 4 5
Elstar 4 5
Marshall McIntosh 4 6
Cripps Pink 4 6
Granny Smith 11 12
Jonathan 5 9
Ralls Janet 10 2
Delicious 4
Discovery 5
Prima 5 9
Fiesta 10 5
Ingrid Marie 10 4
Idared 5
Esopus Spitzenburg 6 9
Braeburn 10 4
Sansa 5
Lodi 11
James Grieve 10
Cripps Red 5 6
Burgundy 10 4
Akane 5
Ambrosia 4
Aurora Golden Gala 4
Beacon 4 5
Ben Davis 4 5 6
Cameo 4
Chinook 4
Clivia 10 11
Co-op 17 10 4
Co-op 18 32 33
Dayton 4 5 9
Delblush 4 5
Delorgue 4 5
Dolgo 11
Geheimrat Dr. Oldenburg 11 5
Duchess of Oldenburg 4 6
Early Cortland 11 4
Empress 5
F2 26829-2-2 10 4
Fantazja 11 6
Fireside 4 6
Fortune 11 5
Frostbite 4 9
Ginger Gold 11 5
GMAL 4327 10 6
GMAL 4328 10 6
GMAL 4329 12 5
GMAL 4332 11 5
Goodland 4 5
Haralson 5 9
Honeygold 4 9
Hudson 4
Jersey Black 11
Jonamac 4 5
Keepsake 4 9
Kerr 11 5
Lady Williams 11 6
Liberty 4 9
Linda 11 6
Longfield 11 5
Macoun 11 4
Malinda 5
Melba 11 6
Melrose 4 5
MN 1627 4 5
MN 1628 4
MN 1691 4 6
MN 1706 19 4
MN 1708 4 9
MN 1760 11 20
MN 1764 4 6
MN 1789 4 5
MN 1802 9
MN 1836 11 4
MN 1837 4 6
MN 1839 4 5
MN 1888 4 6
MN 1899 4
MN 1940 5 9
MN 2016 4 9
AA-44 5 9
Monroe 10 9
Montgomery 11 21
Nicola 4 5
NJ 31 10
NJ 53 11 5
Oriole 11 6
PRI 14-126 4 5
PRI 14-510 5
PRI 16-144 4
PRI 1661-2 4 6
PRI 855-102 4
Primula 4
Raritan 35 4
Regent 4 9
Rubin 5
Russian Seedling 11 9
Sawa 11 4
Sciros 4
Sharon 4 6
Silken 11 9
Wildung 4 6
Splendour 4 5
State Fair 11 9
NJ 55 10 4
Co-op 29 4 5
Sunrise 11 6
Sweet Sixteen 4
Topaz 11 5
Vanda 11
Vista Bella 11 5
Wealthy 6 9
Winesap 4 9
Winter Banana 4 9
Yellow Newtown 5 6
Yellow Transparent 11
0407-0001 4
0407-0005 4 5
0407-0006 4
0407-0007 4
0407-0008 4 5
0408-0003 4
0408-0004 4
0408-0005 4
0408-0007 4 9
0408-0008 4
0408-0010 4
0408-0011 4
0408-0014 4 9
0408-0015 4
0409-0022 4 5
0409-0024 4 5
0409-0028 4
0409-0030 4 5
0409-0032 4
0409-0035 4 5
0409-0036 4 5
0409-0038 4
0409-0039 4 5
0409-0040 4
0409-0043 4
0409-0045 4 5
0410-0002 11 4
0410-0003 11 4
0410-0005 11 4
0410-0006 12 4
0410-0010 12 4
0410-0011 11 4
0410-0012 12 4
0410-0013 11 4
0410-0015 12 4
0410-0017 11 4
0410-0018 11 4
0414-0010 5
0414-0015 4 5
0414-0017 4 5
0414-0018 4
0414-0019 5
0414-0020 4
0414-0021 4 5
0415-0001 4 9
0415-0004 5 9
0415-0005 5 9
0415-0011 5 9
0415-0012 4
0415-0013 4
0415-0014 10 5
0415-0016 5 9
0415-0017 4 5
0415-0019 5 9
0415-0020 4
0415-0025 5 9
AE_HCxJonf-145 4
AE_HCxJonf-157 10 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4 5
AE_HCxJonf-175 10 5
AE_HCxJonf-183 10 5
AE_HCxJonf-185 4
AE0118-237 4 5
AE0118-238 4 9
AE0118-239 4 5
AE0118-240 4 9
AE0118-243 4 5
AE0118-244 5 9
AE0118-245 5 9
AE0118-246 4 9
AE0118-249 4 9
AE0206-159 4
AE0206-160 4
AE0206-161 4 9
AE0206-162 4 9
AE0206-163 4 5
AE0206-164 4
AE0206-165 4 9
AE0206-167 4
AE0206-168 4
AE0206-169 4 5
AE0206-170 4 9
AE0210-146 11 12
AE0210-147 11 5
AE0210-149 11 5
AE0210-150 11 12
AE0210-151 11 5
AE0210-152 4 6
AE0210-153 12 6
AE0210-154 5 6
AE0210-157 11 12
AE0210-158 11 5
AE0210-159 12 6
AE0210-162 11 5
AE0210-163 12 6
AE0210-164 5 6
AE0210-165 12 6
AE0210-166 11 5
AE0210-168 11 5
AE0210-169 11 5
AE0210-170 12 6
AE0210-171 11 5
AE0210-172 11 12
AE0210-173 12 6
AE0210-174 11 12
AE0213-175 11
AE0213-176 11
AE0213-177 11
AE0213-178 11
AE0213-179 11
AE0213-180 11 5
AE0213-181 11
AE0213-182 11
AE0213-183 11 5
AE0213-186 5
AE0213-187 11 5
AE0213-190 5
AE0213-193 11 5
AE0213-194 11 5
AE0213-195 11 5
AE0213-196 11 5
AE0213-197 11 5
AE0213-198 11 14
AE0213-199 11
AE0213-200 11 5
AE0213-201 11
AE0213-202 11 5
AE0213-205 11
AE0213-206 11 5
AE0251-323 4 5
AE0251-325 4
AE0251-327 4 5
AE0251-329 4 5
AE0251-330 4
AE0251-331 4 5
AE0251-342 4
AE0251-343 4 5
AE0406-239 11 5
AE0406-254 11 5
AE0406-258 11 5
AE0406-259 11 5
AE0406-263 4 9
AE0406-264 5 9
AE0406-266 5 9
AE0406-271 4
AE0406-274 11 5
AE0406-278 5 9
AE0406-281 11 4
AE0406-286 11 4
AE0406-288 4 9
AE0406-289 11 5
AE0406-294 11 4
AE0406-298 4 9
Minneiska 4 9
NJ 303955 10
PRI 612-1 4
Arlet 4 5
Co-op 39 4 5
Pinova 10 4
Scired 4 5
Scifresh 10 5
0409-0025 4 5
0409-0026 4
0409-0027 4 5
0409-0031 4
0409-0033 4
0409-0047 4
G-14-050 4
G-14-052 4
G-14-054 10 4
G-14-055 10 4
G-14-056 10 4
G-14-057 4
G-14-059 10 4
G-14-060 4
G-14-061 4
G-14-062 4
G-14-064 10 4
G-14-065 4
G-14-069 4
G-14-067 4
G-14-068 10 4
G-14-071 4
G-14-073 10 4
G-14-074 4
G-14-075 10 4
G-14-076 10 4
G-14-077 4
G-14-078 4
G-14-080 4
G-09-232 10 11
G-09-233 10 11
G-09-234 10 11
G-09-235 11 4
G-09-236 10 5
G-09-237 10 5
G-09-238 11 4
G-09-239 11 4
G-09-240 4 5
G-09-241 11 4
G-09-242 10 11
G-09-243 4 5
G-09-245 10 5
G-09-246 10 11
G-09-258 10 11
G-09-259 10 5
G-09-260 4 5
G-09-261 10 11
G-09-262 11 4
G-09-263 10 11
G-09-264 10 5
G-09-265 4 5
G-09-266 10 11
G-09-267 4 5
G-09-268 4 5
0408-0021 4
Wijcik McIntosh 4 6
Beauty of Bath 15
Priam 4 9
Northern Spy 4 6
Co-op 15 12 4
MN 1702 4 9
WA 2 4
WA 5 4 5
Pitmaston Pineapple 11 5
0411-0011 5 9
0411-0017 5 9
0411-0023 4 5
AE0250-086 4
AE0250-087 4 5
AE0250-089 4
AE0250-090 4 5
AE0250-092 4 5
AE0250-093 4
AE0250-094 4
AE0250-095 4 5
Sonya 4
Co-op 38 4
AE0250-096 4
AE0250-327 5 6
Co-op 30 4 9
Jonagrimes 4 6
AE0211-036 11 5
G-07-039 4 5
G-07-041 10 5
BC-8S-27-43 4 5
AE0250-091 5 6
AE0250-097 5 6
AE0250-325 10 4
AE0250-326 5 6
AE0250-329 4 6
AE0250-333 10 4
AE0250-334 10 4
AE0250-335 4 6
AE0250-336 4 6
AE0250-338 4 6
AE0250-341 5 6
AE0211-038 10 5
AE0211-043 11 6
AE0211-045 5 6
AE0211-051 5 6
G-07-010 12 5
G-07-014 12 5
G-07-015 11 5
G-07-019 11 5
G-07-020 11 5
G-07-024 11 5
G-07-032 12 5
G-07-033 11 5
G-07-034 11 5
G-07-035 12 5
G-07-044 12 5
AE0211-053 4 5
AE0211-054 5 9
AE0250-088 4 9
AE0250-324 4 9
AE0250-328 4 5
AE0250-331 4
AE0250-332 4 9
AE0250-337 4
AE0250-339 4 9
Minnewashta 4 9
Autumn Crisp 10 4
G-14-066 4
Lu1-11-010 4
Lu1-11-013 10 4
Lu1-11-016 10 4
Lu1-11-017 10 4
Lu1-11-018 10 4
NJ 90 4 6
Lord Lambourne 10 11
Antonovka GH 4
Grimes Golden 2 4
Kidds Orange Red 10 4
Malus baccata Hansen #2 4
Malus baccata Jackii 4
Summerred 4
William's Pride 11
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-21Apple-RosBREED-3.9K-2019215.7416.45
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536
RosBREEDSNP_SNP_CA_26366233_Lg15_01850_MAF20_MDP0000264232_exon5--BBBBBABABBB--BBABBA-BBBAA--ABBAAA
RosBREEDSNP_SNP_GA_26369038_Lg15_01850_MAF30_1673051_exon3--BBBBBBABABBBAA-BB-----BB-BBAABABA
RosBREEDSNP_SNP_GA_7279497_Lg2_00505_MAF20_MDP0000886637_exon4ABBBA--BBBBABBBBBAABBBBB-BBBBABBAAB
RosBREEDSNP_SNP_GT_26336623_Lg15_01850_MAF30_MDP0000392859_exon4--BBBBBBABBBBBAA-BBBBB--BB-BBABAABB
RosBREEDSNP_SNP_TC_26371625_Lg15_01850_MAF50_1639406_exon1--BABBAAABA----BABAAB--B---ABABA-AA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:7637707..7939162. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation