Mdo-HB-02-19

Haplotype Block Overview
Name Mdo-HB-02-19
Species Malus x domestica
Stock Haplotype [view all 433]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 17
Rome Beauty Law 14 6
Jonafree 14 9
Redfree 10 6
Spartan 11 13
Wagener 15 17
Worcester Pearmain 11 5
Tsugaru 5 9
Golden Delicious 4 5
Fuji 10 11
Empire 10 11
Gala 11 5
Honeycrisp 4 5
Elstar 4 5
Marshall McIntosh 10 13
Cripps Pink 4
Granny Smith 11
Jonathan 5 9
Ralls Janet 10
Delicious 11 9
Discovery 11 5
Prima 11 5
821 16
Fiesta 17
Ingrid Marie 17 4
Idared 17 5
Esopus Spitzenburg 10 9
Braeburn 11 17
Sansa 5
Lodi 11 4
James Grieve 14 17
Cripps Red 4 5
Burgundy 14 4
Akane 5
Ambrosia 4 9
Aurora Golden Gala 11 9
Beacon 10 9
Ben Davis 10 5 9
Cameo 11 4
Chinook 11 9
Clivia 14 17
Co-op 17 14 9
Co-op 18 14 9
Dayton 11 4 5
Delblush 5 9
Delcorf 33 4
Delorgue 4 5
Dolgo 6 8
Geheimrat Dr. Oldenburg 14 5
Duchess of Oldenburg 6
Early Cortland 11 13 9
Empress 5
F2 26829-2-2 14 9
Fantazja 10 11
Fireside 4 9
Fortune 11 5
Frostbite 5 9
Ginger Gold 11 5
GMAL 4327 10 11
GMAL 4328 10 11
GMAL 4329 17 6
GMAL 4332 17
Goodland 11 13
Haralson 6 9
Honeygold 4 9
Hudson 11 4
Jersey Black 4
Jonamac 13 5
Keepsake 4 9
Kerr 6
Lady Williams 11 4
Liberty 13 9
Linda 11 9
Liveland Raspberry 5 7
Longfield 21 9
Macoun 13 4
Malinda 5 6
Mantet 6
Melba 10 7
Melrose 11 5
MN 1627 5 6
MN 1628 4 5
MN 1691 13 9
MN 1706 10 6
MN 1708 6 9
MN 1760 10 9
MN 1764 10 5
MN 1789 13 5
MN 1802 9
MN 1836 4 6
MN 1837 6 9
MN 1839 4 5
MN 1888 6 9
MN 1899 13 4
MN 1940 5 9
MN 2016 4 9
AA-44 5 9
Monroe 14 9
Montgomery 4 5
Nicola 5 9
NJ 31 14
NJ 53 5 6
Oriole 5 6
PRI 14-126 5 9
PRI 14-510 5 9
PRI 16-144 9
PRI 1661-2 10 9
PRI 54-12 14 9
PRI 855-102 9
Primula 10 9
Raritan 11 5
Regent 13 9
Rubin 5
Russian Seedling 11 17
Sawa 11 9
Sciros 11 9
Sharon 13 6
Silken 6 9
Wildung 4 6
Splendour 5 9
State Fair 6 9
NJ 55 17 4
Co-op 29 13 5
Sunrise 10 6
Sweet Sixteen 4 5
Topaz 11 5
Vanda 11
Vista Bella 5 6
Wealthy 6 9
Winesap 9
Winter Banana 43 5
Yellow Newtown 10 11
Yellow Transparent 11 13
0407-0001 11 5
0407-0005 5 9
0407-0006 4 9
0407-0007 4 9
0407-0008 11 5
0408-0003 9
0408-0004 11 9
0408-0005 9
0408-0007 9
0408-0008 11 9
0408-0010 11 9
0408-0011 11 9
0408-0014 9
0408-0015 11 9
0409-0022 11 5
0409-0024 5 9
0409-0028 4 9
0409-0030 11 5
0409-0032 4 9
0409-0035 11 5
0409-0036 5 9
0409-0038 4 9
0409-0039 11 5
0409-0040 4 9
0409-0043 4 9
0409-0045 11 5
0410-0002 11
0410-0003 11
0410-0005 11 9
0410-0006 11 9
0410-0010 11 9
0410-0011 11 9
0410-0012 11 9
0410-0013 11
0410-0015 11 9
0410-0017 11
0410-0018 11 9
0414-0010 5
0414-0015 4 5
0414-0017 4
0414-0018 4 9
0414-0019 5
0414-0020 4 9
0414-0021 4 5
0415-0001 4 9
0415-0004 5 9
0415-0005 5 9
0415-0011 5 9
0415-0012 4 9
0415-0013 4 9
0415-0014 17 5
0415-0016 5 9
0415-0017 5 9
0415-0019 5 9
0415-0020 4 9
0415-0025 5 9
AE_HCxJonf-145 4 9
AE_HCXJonf-148 5 9
AE_HCxJonf-157 14 4
AE_HCXJonf-162 4 9
AE_HCXJonf-168 13 5
AE_HCxJonf-175 14 5
AE_HCxJonf-183 5 9
AE_HCxJonf-185 4 9
AE0118-237 13 5
AE0118-238 4 9
AE0118-239 4 5
AE0118-240 13 4
AE0118-243 13 5
AE0118-244 5 9
AE0118-245 5 9
AE0118-246 4 9
AE0118-249 4 9
AE0206-159 11 13
AE0206-160 11 13
AE0206-161 11 9
AE0206-162 11 9
AE0206-163 13 5
AE0206-164 11 13
AE0206-165 11 9
AE0206-167 11 9
AE0206-168 11 13
AE0206-169 13 5
AE0206-170 11 9
AE0210-146 6
AE0210-147 17 6
AE0210-149 17 6
AE0210-150 6
AE0210-151 17 6
AE0210-152 10 13
AE0210-153 10 6
AE0210-154 10 17
AE0210-157 6
AE0210-158 17 6
AE0210-159 10 6
AE0210-162 17 6
AE0210-163 10 6
AE0210-164 10 17
AE0210-165 10 6
AE0210-166 17 6
AE0210-168 17 6
AE0210-169 17 6
AE0210-170 10 6
AE0210-171 10 17
AE0210-172 6
AE0210-173 10 6
AE0210-174 6
AE0213-175 11 17
AE0213-176 11 17
AE0213-177 17 5
AE0213-178 17 5
AE0213-179 11 17
AE0213-180 11 17
AE0213-181 17 5
AE0213-182 11 17
AE0213-183 17 5
AE0213-186 17 5
AE0213-187 11 17
AE0213-190 17 5
AE0213-193 17 5
AE0213-194 17 5
AE0213-195 11 17
AE0213-196 17 5
AE0213-197 17 5
AE0213-198 11 5
AE0213-199 11 17
AE0213-200 17 5
AE0213-201 11 17
AE0213-202 17 5
AE0213-205 11 17
AE0213-206 17 5
AE0251-323 5
AE0251-325 5
AE0251-327 4 5
AE0251-329 4 5
AE0251-330 11 4
AE0251-331 4 5
AE0251-342 11 5
AE0251-343 4 5
AE0406-239 4 6
AE0406-254 5 6
AE0406-258 5 6
AE0406-259 5 6
AE0406-263 4 9
AE0406-264 5 9
AE0406-266 5 9
AE0406-271 4
AE0406-274 5 6
AE0406-278 5 9
AE0406-281 4 6
AE0406-286 4 6
AE0406-288 4 9
AE0406-289 5 6
AE0406-294 4 6
AE0406-298 4 9
Minneiska 4 9
NJ 303955 17
PRI 612-1 11 9
Arlet 4 5
Co-op 39 4 5
Pinova 17 4
Scired 11 5
Scifresh 17 5
0409-0025 11 5
0409-0026 4 9
0409-0027 11 5
0409-0031 11 4
0409-0033 11 4
0409-0047 11 4
G-14-050 11 4
G-14-052 11 4
G-14-054 11 17
G-14-055 11 17
G-14-056 11 17
G-14-057 11 4
G-14-059 11 17
G-14-060 11 4
G-14-061 11 4
G-14-062 11 4
G-14-064 11 17
G-14-065 11 4
G-14-069 11 4
G-14-067 4
G-14-068 17 4
G-14-071 11 4
G-14-073 11 17
G-14-074 4
G-14-075 17 4
G-14-076 17 4
G-14-077 11 4
G-14-078 4
G-14-080 4
G-09-232 11 17
G-09-233 11 17
G-09-234 11 17
G-09-235 11
G-09-236 17 5
G-09-237 17 5
G-09-238 11
G-09-239 11 17
G-09-240 11 5
G-09-241 11
G-09-242 11 17
G-09-243 11 5
G-09-245 17 5
G-09-246 11 17
G-09-258 11 17
G-09-259 17 5
G-09-260 11 5
G-09-261 11 17
G-09-262 11 5
G-09-263 17 5
G-09-264 17 5
G-09-265 11 5
G-09-266 11 17
G-09-267 11 5
G-09-268 11 5
0408-0021 9
Wijcik McIntosh 10 13
Beauty of Bath 11
Priam 9
Northern Spy 10 4
Co-op 15 14 9
MN 1702 4 9
WA 2 11 9
WA 5 5 9
Pitmaston Pineapple 14 5
0411-0011 5 9
0411-0017 5 9
0411-0023 5 9
AE0250-086 11 5
AE0250-087 5
AE0250-089 11 5
AE0250-090 4 5
AE0250-092 5
AE0250-093 11 4
AE0250-094 11 5
AE0250-095 5
Sonya 11
Co-op 38 4 9
AE0250-096 13 4
AE0250-327 5 9
Co-op 30 9
Jonagrimes 4 6
AE0211-036 11 13
G-07-039 11 5
G-07-041 10 5
BC-8S-27-43 11 5
AE0250-091 10 5
AE0250-097 10 5
AE0250-325 11 4
AE0250-326 10 5
AE0250-329 10 4
AE0250-333 11 4
AE0250-334 11 4
AE0250-335 10 4
AE0250-336 10 4
AE0250-338 10 4
AE0250-341 10 5
AE0211-038 11 5
AE0211-043 10 11
AE0211-045 10 5
AE0211-051 10 5
G-07-010 11 5
G-07-014 11 5
G-07-015 11 5
G-07-019 11 5
G-07-020 11 5
G-07-024 11 5
G-07-032 11 5
G-07-033 11 5
G-07-034 11 5
G-07-035 11 5
G-07-044 11 5
AE0211-053 13 5
AE0211-054 5 9
AE0250-088 4 9
AE0250-324 4 9
AE0250-328 13 5
AE0250-331 13 4
AE0250-332 4 9
AE0250-337 13 4
AE0250-339 13 4
Minnewashta 13 9
Autumn Crisp 14 4
G-14-066 4
Lu1-11-010 11 13
Lu1-11-013 10 13
Lu1-11-016 10 13
Lu1-11-017 10 13
Lu1-11-018 10 4
NJ 90 10 13
Lord Lambourne 11 17
Antonovka GH 21 6
Grimes Golden 2 4
Kidds Orange Red 11 17
Malus baccata Hansen #2 13 9
Malus baccata Jackii 9
Summerred 13 44
William's Pride 11 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-19Apple-RosBREED-3.9K-2019213.0913.11
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445
GDsnp00333--ABB--BBB-BBBBBB-BA---A--AB----AB-B-BBABBBB
GDsnp01162BAABAABABBAnullnull--B-BnullB-----BAB--ABABABB-ABBBAnull
RosBREEDSNP_SNP_GA_6573609_Lg2_00333_MAF30_220959_exon1ABBBAABBABBBAABBBBBBBB-BABBBAB----ABABBABAAB
RosBREEDSNP_SNP_TC_6567574_Lg2_00333_MAF20_MDP0000881125_exon1AAAAAAAAABAAAAAAAABABAAAABABAA----AAABBA-B--
RosBREEDSNP_SNP_TG_6570982_Lg2_00333_MAF20_636741_exon1--AAAAAAAAAAAAABB-AAAAAAA-----------AAAA-A--
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:6679633..6794139. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation