Mdo-HB-02-15

Haplotype Block Overview
Name Mdo-HB-02-15
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 22
Rome Beauty Law 11 14
Jonafree 11 5
Redfree 11 7
Spartan 11 4
Wagener 11 7
Worcester Pearmain 11 4
Tsugaru 4 7
Golden Delicious 3 4
Fuji 11 13
Empire 11
Gala 11 4
Honeycrisp 3 4
Elstar 3 4
Marshall McIntosh 11 4
Cripps Pink 3
Granny Smith 11 4
Jonathan 4 7
Ralls Janet 13 2
Delicious 11 5
Discovery 11 4
Prima 11 4
Fiesta 11 22
Ingrid Marie 22 3
Idared 11 4
Esopus Spitzenburg 7 8
Braeburn 11 22
Sansa 4
Lodi 22 7
James Grieve 22
Cripps Red 3 4
Burgundy 11 3
Akane 4
Ambrosia 3 5
Aurora Golden Gala 11 5
Beacon 4 7
Ben Davis 4 5 8
Cameo 11 3
Chinook 11 5
Clivia 22 32
Co-op 17 11 5
Co-op 18 11 5
Dayton 11 4 7
Delblush 4 5
Delcorf 3 41
Delorgue 3 4
Dolgo 42 7
Geheimrat Dr. Oldenburg 32 4
Duchess of Oldenburg 4 5
Early Cortland 22 4 5
Empress 4 7
F2 26829-2-2 11 5
Fantazja 11
Fireside 3 7
Fortune 4
Frostbite 4 7
Ginger Gold 22 4
GMAL 4327 37 8
GMAL 4328 37 8
GMAL 4329 11 7
GMAL 4332 22 7
Goodland 11 4
Haralson 5 7
Honeygold 3 7
Hudson 11 3
Jersey Black 8
Jonamac 4
Keepsake 3 7
Kerr 5 7
Lady Williams 11 3
Liberty 4 7
Linda 11 7
Longfield 4 7
Macoun 4 8
Malinda 5 7
Melba 11 4
Melrose 11 4
MN 1628 3 4
MN 1691 4 7
MN 1706 22 4
MN 1708 4 7
MN 1760 7 8
MN 1764 4 8
MN 1789 4
MN 1802 7
MN 1836 3 7
MN 1837 4 7
MN 1839 3 4
MN 1888 4 7
MN 1899 3 4
MN 1940 4 7
MN 2016 3 7
AA-44 3 4
Monroe 11 7
Montgomery 4 7
Nicola 11 5
NJ 31 11
NJ 53 7
Oriole 4 5
PRI 14-126 4 5
PRI 14-510 4
PRI 16-144 5
PRI 1661-2 11 5
PRI 54-12 11 7
PRI 855-102 5
Primula 11 5
Raritan 37 4
Regent 4 7
Rubin 4
Russian Seedling 37 7
Sawa 11 5
Sciros 11 5
Sharon 4 5
Silken 7
Wildung 3 5
Splendour 4 5
State Fair 7
NJ 55 22 3
Co-op 29 4
Sunrise 11 7
Sweet Sixteen 3 4
Topaz 11 4
Vanda 11
Vista Bella 5 7
Wealthy 5 7
Winesap 10 5
Winter Banana 11 8
Yellow Newtown 4 8
Yellow Transparent 22 36
0407-0001 11 4
0407-0005 4 5
0407-0006 3 5
0407-0007 3 5
0407-0008 11 4
0408-0003 5
0408-0004 11 5
0408-0005 5
0408-0007 5 7
0408-0008 11 5
0408-0010 11 5
0408-0011 11 7
0408-0014 5 7
0408-0015 11 5
0409-0022 11 4
0409-0024 4 5
0409-0028 3 5
0409-0030 11 4
0409-0032 3 5
0409-0035 11 4
0409-0036 4 5
0409-0038 3 5
0409-0039 11 4
0409-0040 3 5
0409-0043 3 5
0409-0045 11 3
0410-0002 11
0410-0003 11
0410-0005 11 5
0410-0006 4 5
0410-0010 4 5
0410-0011 11 5
0410-0012 4 5
0410-0013 11
0410-0015 4 5
0410-0017 11
0410-0018 11 5
0414-0010 4
0414-0015 3 4
0414-0017 3
0414-0018 3 5
0414-0019 4
0414-0020 3 5
0414-0021 3 4
0415-0001 3 7
0415-0004 4 5
0415-0005 4 7
0415-0011 4 7
0415-0012 3 5
0415-0013 3 5
0415-0014 22 4
0415-0016 4 7
0415-0017 4 5
0415-0019 4 7
0415-0020 3 5
0415-0025 4 7
AE_HCxJonf-145 3 5
AE_HCXJonf-148 4 5
AE_HCxJonf-157 11 3
AE_HCXJonf-162 3 5
AE_HCXJonf-168 4
AE_HCxJonf-175 11 4
AE_HCxJonf-183 4 5
AE_HCxJonf-185 3 5
AE0118-237 4
AE0118-238 3 7
AE0118-239 3 4
AE0118-240 3 4
AE0118-243 4
AE0118-244 4 7
AE0118-245 4 7
AE0118-246 3 7
AE0118-249 3 7
AE0206-159 11 4
AE0206-160 11 4
AE0206-161 11 7
AE0206-162 11 7
AE0206-163 4
AE0206-164 11 4
AE0206-165 11 7
AE0206-167 11 7
AE0206-168 11 4
AE0206-169 4
AE0206-170 11 7
AE0210-146 11 7
AE0210-147 11 7
AE0210-149 11 7
AE0210-150 7
AE0210-151 11 7
AE0210-152 11 7
AE0210-153 11 7
AE0210-154 11
AE0210-157 7
AE0210-158 11 7
AE0210-159 11 7
AE0210-162 11 7
AE0210-163 11 7
AE0210-164 11
AE0210-165 11 7
AE0210-166 11 7
AE0210-168 11 7
AE0210-169 11 7
AE0210-170 11 7
AE0210-171 11
AE0210-172 7
AE0210-173 11 7
AE0210-174 7
AE0213-175 22 7
AE0213-176 22 7
AE0213-177 4 7
AE0213-178 4 7
AE0213-179 22 7
AE0213-180 22
AE0213-181 4 7
AE0213-182 22 7
AE0213-183 4 7
AE0213-186 22 4
AE0213-187 22
AE0213-190 22 4
AE0213-193 4 7
AE0213-194 4 7
AE0213-195 22
AE0213-196 4 7
AE0213-197 22 4
AE0213-198 22 4
AE0213-199 22 7
AE0213-200 4 7
AE0213-201 4 7
AE0213-202 4 7
AE0213-205 22 7
AE0213-206 4 7
AE0251-323 4
AE0251-325 4
AE0251-327 3 4
AE0251-329 3 4
AE0251-330 11 3
AE0251-331 3 4
AE0251-342 11 4
AE0251-343 3 4
AE0406-239 3 7
AE0406-254 4 7
AE0406-258 4 7
AE0406-259 4 7
AE0406-263 3 7
AE0406-264 4 7
AE0406-266 4 7
AE0406-271 3
AE0406-274 4 7
AE0406-278 4 7
AE0406-281 3 7
AE0406-286 3 7
AE0406-288 3 7
AE0406-289 4 7
AE0406-294 3 7
AE0406-298 3 7
Minneiska 3 7
NJ 303955 22
PRI 612-1 11 5
Arlet 3 4
Co-op 39 52 8
Pinova 22 3
Scired 11 4
Scifresh 22 4
0409-0025 11 4
0409-0026 3 5
0409-0027 11 4
0409-0031 11 3
0409-0033 11 3
0409-0047 11 3
G-14-050 11 3
G-14-052 11 3
G-14-054 11 22
G-14-055 11 22
G-14-056 11 3
G-14-057 11 3
G-14-059 11 22
G-14-060 11 3
G-14-061 11 22
G-14-062 11 3
G-14-064 11 22
G-14-065 11 3
G-14-069 11 3
G-14-067 3
G-14-068 22 3
G-14-071 3
G-14-073 11 22
G-14-074 3
G-14-075 22 3
G-14-076 22 3
G-14-077 11 3
G-14-078 3
G-14-080 3
G-09-232 22
G-09-233 22
G-09-234 22
G-09-235 11 22
G-09-236 22 4
G-09-237 22 4
G-09-238 11 22
G-09-239 22
G-09-240 22 4
G-09-241 11 22
G-09-242 22
G-09-243 11 4
G-09-245 22 4
G-09-246 22
G-09-258 22
G-09-259 22 4
G-09-260 11 4
G-09-261 22
G-09-262 11 4
G-09-263 22 4
G-09-264 22 4
G-09-265 11 4
G-09-266 22
G-09-267 11 4
G-09-268 11 4
0408-0021 5
Wijcik McIntosh 11 4
Beauty of Bath 11
Priam 5 7
Northern Spy 3 8
Co-op 15 11 5
MN 1702 3 4
WA 2 11 5
WA 5 4 5
Pitmaston Pineapple 32 4
0411-0011 4 7
0411-0017 4 7
0411-0023 4 5
AE0250-086 11 4
AE0250-087 4
AE0250-089 11 4
AE0250-090 3 4
AE0250-092 4
AE0250-093 11 3
AE0250-094 11 4
AE0250-095 4
Sonya 11
Co-op 38 3 5
AE0250-096 4
AE0250-327 4 7
Co-op 30 5 7
AE0211-036 22 36
G-07-039 11 4
G-07-041 13 4
BC-8S-27-43 11 4
AE0250-091 4 8
AE0250-097 4 8
AE0250-325 3 37
AE0250-326 4 8
AE0250-329 3 8
AE0250-333 3 37
AE0250-334 3 37
AE0250-335 3 8
AE0250-336 3 8
AE0250-338 3 8
AE0250-341 4 8
AE0211-038 37 4
AE0211-043 22 8
AE0211-045 4 8
AE0211-051 4 8
G-07-010 4
G-07-014 4
G-07-015 11 4
G-07-019 11 4
G-07-020 11 4
G-07-024 11 4
G-07-032 4
G-07-033 11 4
G-07-034 11 4
G-07-035 4
G-07-044 4
AE0211-053 4
AE0211-054 4 7
AE0250-088 3 7
AE0250-324 3 7
AE0250-328 4
AE0250-331 3 4
AE0250-332 3 7
AE0250-337 3 4
AE0250-339 3 4
Minnewashta 4 7
Autumn Crisp 3 7
G-14-066 3
Lu1-11-010 11
Lu1-11-013 11 13
Lu1-11-016 11 13
Lu1-11-017 11 13
Lu1-11-018 13 3
NJ 90 11 4
Lord Lambourne 11 22
Antonovka GH 13 3
Grimes Golden 3
Kidds Orange Red 11 22
Malus baccata Hansen #2 4 8
Malus baccata Jackii 4
Summerred 4
William's Pride 35
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-15Apple-RosBREED-3.9K-2019212.7212.72
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758
RosBREEDSNP_SNP_CA_5929140_Lg2_01663_MAF30_MDP0000144357_exon3-ABB-BABBB-AAB-BBBBAAA------BAB----BBB------BB---AB---BBB
RosBREEDSNP_SNP_CT_5864957_Lg2_01663_MAF20_MDP0000321546_exon2-BBABBBABB-B-----BABBBAB------BBBBAB------BB----BABBBABBA
RosBREEDSNP_SNP_GA_5926620_Lg2_01663_MAF30_1632302_exon1BBBBBBBBBAAABA-ABBBBBBBBB-----BB-BBABB--ABBABABABBBA--BBB
RosBREEDSNP_SNP_GA_5931646_Lg2_01663_MAF10_144193_exon1-ABB-BB--B-B---BBBBAB-BBB-----A--BBBB-ABBBBBBB---BABBB-BB
RosBREEDSNP_SNP_GT_5868090_Lg2_01663_MAF40_265196_exon1-BBBBABBAB-B---BBBBBABAB-BB---AABABAA---------BB-ABBBABBB
RosBREEDSNP_SNP_TC_15764608_Lg15_00273_MAF10_1659846_exon6-AABAAABAA-AAAA-----AAAAAABBAAAAAAAA-A----AA----AAAAAAABA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:6049871..6101308. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation