Mdo-HB-02-12

Haplotype Block Overview

Name	Mdo-HB-02-12
Species	Malus x domestica
Stock Haplotype	[view all 426]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	6
Rome Beauty Law	2 5
Jonafree	2 5
Redfree	5 6
Spartan	2
Wagener	2 5
Worcester Pearmain	2 3
Tsugaru	2 3
Golden Delicious	2 3
Fuji	2 5
Empire	2 5
Gala	2 3
Honeycrisp	2 3
Elstar	2 3
Marshall McIntosh	2 5
Cripps Pink	2
Granny Smith	5 6
Jonathan	2 3
Ralls Janet	2 5
Delicious	2
Discovery	3 5
Prima	3 5
821	3
Fiesta	5 6
Ingrid Marie	2 6
Idared	3 5
Esopus Spitzenburg	2
Braeburn	2 6
Sansa	3
Lodi	6
James Grieve	5 6
Cripps Red	2 3
Burgundy	2 5
Akane	3
Ambrosia	2
Aurora Golden Gala	2
Beacon	3 6
Ben Davis	2 3
Cameo	2
Clivia	2 6
Co-op 17	2 5
Co-op 18	18 6
Dayton	3 5 6
Delblush	2 3
Delorgue	2 3
Dolgo	3 6
Geheimrat Dr. Oldenburg	2 3
Duchess of Oldenburg	2 3
Early Cortland	2 6
Empress	3 6
F2 26829-2-2	2 5
Fantazja	5 6
Fireside	2 6
Fortune	2 3
Frostbite	2 3
Ginger Gold	3 6
GMAL 4327	15 5
GMAL 4328	15 5
GMAL 4329	15 2
GMAL 4332	5 6
Goodland	2
Haralson	2 6
Honeygold	2
Hudson	2
Jersey Black	2 6
Jonamac	2 3
Keepsake	2
Kerr	6
Lady Williams	2 5
Liberty	2 5
Linda	2 6
Liveland Raspberry	3 6
Longfield	2 3
Macoun	2 5
Malinda	6
Melba	5 6
Melrose	2 3
MN 1628	2 3
MN 1691	2
MN 1706	2 6
MN 1708	2 3
MN 1760	2
MN 1764	2 3
MN 1789	2 3
MN 1802	2
MN 1836	2 6
MN 1837	2 3
MN 1839	3 6
MN 1888	2 3
MN 1899	2 6
MN 1940	2 3
MN 2016	2
AA-44	2 3
Monroe	2 5
Montgomery	3 6
Nicola	2
NJ 31	5
NJ 53	6
Oriole	2 3
PRI 14-126	2 3
PRI 14-510	2 3
PRI 16-144	2
PRI 1661-2	2 5
PRI 54-12	2 5
PRI 855-102	2
Primula	2 5
Raritan	5 6
Regent	2
Rubin	3
Russian Seedling	5 6
Sawa	2 6
Sciros	2
Sharon	2
Silken	2 6
Wildung	2 6
Splendour	2 3
State Fair	2 6
NJ 55	2 6
Co-op 29	2 3
Sunrise	5 6
Sweet Sixteen	2 3
Topaz	2 3
Vanda	2
Vista Bella	2 6
Wealthy	2
Winesap	2
Winter Banana	18 6
Yellow Newtown	13 2
Yellow Transparent	2 6
0407-0001	2 3
0407-0005	2 3
0407-0006	2
0407-0007	2
0407-0008	2 3
0408-0003	2
0408-0004	2
0408-0005	2
0408-0007	2
0408-0008	2
0408-0010	2
0408-0011	2
0408-0014	2
0408-0015	2
0409-0022	2 3
0409-0024	2 3
0409-0028	2
0409-0030	2
0409-0032	2
0409-0035	2 3
0409-0036	2 3
0409-0038	2
0409-0039	2 3
0409-0040	2
0409-0043	2
0409-0045	2
0410-0002	2 6
0410-0003	2 5
0410-0005	2 5
0410-0006	2 6
0410-0010	2 6
0410-0011	2 5
0410-0012	2 6
0410-0013	2 5
0410-0015	2 6
0410-0017	2 5
0410-0018	2 5
0414-0010	3
0414-0015	2 3
0414-0017	2
0414-0018	2
0414-0019	3
0414-0020	2
0414-0021	3
0415-0001	2
0415-0004	2 3
0415-0005	2 3
0415-0011	2 3
0415-0012	2
0415-0013	2
0415-0014	3 6
0415-0016	2 3
0415-0017	2 3
0415-0019	2 3
0415-0020	2
0415-0025	2 3
AE_HCxJonf-145	2
AE_HCXJonf-148	2
AE_HCxJonf-157	2 5
AE_HCXJonf-162	2
AE_HCXJonf-168	2 3
AE_HCxJonf-175	3 5
AE_HCxJonf-183	2 3
AE_HCxJonf-185	2
AE0118-237	2 3
AE0118-238	2
AE0118-239	2 3
AE0118-240	2
AE0118-243	2 3
AE0118-244	2 3
AE0118-245	2 3
AE0118-246	2
AE0118-249	2
AE0206-159	2
AE0206-160	2
AE0206-161	2
AE0206-162	2
AE0206-163	2 3
AE0206-164	2
AE0206-165	2
AE0206-167	2 3
AE0206-168	2
AE0206-169	2 3
AE0206-170	2
AE0210-147	15 6
AE0210-149	15 6
AE0210-150	2 6
AE0210-151	15 6
AE0210-152	2 5
AE0210-153	2 5
AE0210-157	2 6
AE0210-158	15 6
AE0210-159	2 5
AE0210-162	15 6
AE0210-163	2 5
AE0210-164	2 5
AE0210-165	2 5
AE0210-166	15 6
AE0210-168	15 6
AE0210-169	15 6
AE0210-170	2 6
AE0210-172	2 6
AE0210-173	2 5
AE0210-174	2 6
AE0213-175	5 6
AE0213-176	5 6
AE0213-177	3 5
AE0213-178	3 5
AE0213-179	5 6
AE0213-180	6
AE0213-181	3 5
AE0213-182	5 6
AE0213-183	3 5
AE0213-186	3 6
AE0213-187	6
AE0213-190	3 6
AE0213-193	3 5
AE0213-194	3 5
AE0213-195	6
AE0213-196	3 5
AE0213-197	3 6
AE0213-198	6
AE0213-199	5 6
AE0213-200	3 5
AE0213-201	3 5
AE0213-202	3 5
AE0213-205	5 6
AE0213-206	3 5
AE0251-323	3
AE0251-325	3
AE0251-327	2 3
AE0251-329	2 3
AE0251-330	2
AE0251-331	2 3
AE0251-342	2 3
AE0251-343	2 3
AE0406-239	2 6
AE0406-254	3 6
AE0406-258	3 6
AE0406-259	3 6
AE0406-264	2 3
AE0406-266	2 3
AE0406-271	2
AE0406-274	3 6
AE0406-278	2 3
AE0406-286	2 6
AE0406-288	2
AE0406-289	3 6
AE0406-294	2
AE0406-298	2
Minneiska	2
NJ 303955	6
PRI 612-1	2
Arlet	2 3
Co-op 39	2 3
Pinova	2 6
Scired	2 3
Scifresh	3 6
0409-0025	2 3
0409-0026	2
0409-0027	2 3
0409-0031	2
0409-0033	2
0409-0047	2
G-14-050	2
G-14-052	2
G-14-054	2 6
G-14-055	2 6
G-14-056	2
G-14-057	2 6
G-14-059	2 6
G-14-060	2
G-14-061	2 6
G-14-062	2
G-14-064	2 6
G-14-065	2
G-14-069	2
G-14-067	2
G-14-068	2
G-14-071	2
G-14-073	2 6
G-14-074	2
G-14-075	2 6
G-14-076	2 6
G-14-077	2
G-14-078	2
G-14-080	2 6
G-09-232	6
G-09-233	2 6
G-09-234	6
G-09-235	2 6
G-09-236	3 6
G-09-237	3 6
G-09-238	2 6
G-09-239	6
G-09-240	3 6
G-09-241	2 6
G-09-242	6
G-09-243	2 3
G-09-245	3 6
G-09-246	6
G-09-258	6
G-09-259	3 6
G-09-260	2 3
G-09-261	6
G-09-262	2 3
G-09-263	3 6
G-09-264	3 6
G-09-265	2 6
G-09-266	6
G-09-267	2 3
G-09-268	2 3
0408-0021	2
Wijcik McIntosh	2 5
Beauty of Bath	3 5
Priam	2
Northern Spy	2
Co-op 15	2 5
MN 1702	3 6
WA 2	2
WA 5	2 3
Pitmaston Pineapple	2 3
0411-0011	2 3
0411-0017	2 3
0411-0023	2 3
AE0250-086	2 3
AE0250-087	3
AE0250-089	3
AE0250-090	2 3
AE0250-092	3
AE0250-093	2
AE0250-094	2 3
AE0250-095	3
Sonya	2
Co-op 38	2
AE0250-096	2 3
AE0250-327	2 3
Co-op 30	2
Jonagrimes	2
AE0211-036	2 6
G-07-039	2 3
PRI 14-152	3 5
PRI 47-176	3 5
G-07-041	3 5
BC-8S-27-43	2 3
AE0250-091	15 3
AE0250-097	15 3
AE0250-325	2 5
AE0250-326	15 3
AE0250-329	15 2
AE0250-333	2 5
AE0250-334	2 5
AE0250-335	15 2
AE0250-336	15 2
AE0250-338	2 5
AE0250-341	15 3
AE0211-038	3 5
AE0211-043	15 6
AE0211-045	15 3
AE0211-051	15 3
G-07-010	3 6
G-07-014	3 6
G-07-015	3 5
G-07-019	3 5
G-07-020	3 5
G-07-024	3 5
G-07-032	3 6
G-07-033	3 5
G-07-034	3 5
G-07-035	3 6
G-07-044	3 6
AE0211-053	2 3
AE0211-054	2 3
AE0250-088	2
AE0250-324	2
AE0250-328	2 3
AE0250-331	2
AE0250-332	2
AE0250-337	2
AE0250-339	2
Minnewashta	2
Autumn Crisp	2
G-14-066	2
Lu1-11-010	2 5
Lu1-11-013	5
Lu1-11-016	5
Lu1-11-017	5
Lu1-11-018	2 5
NJ 90	2 5
Lord Lambourne	2 6
Antonovka GH	2 3
Grimes Golden	2
Kidds Orange Red	2 6
Malus baccata Hansen #2	3
Malus baccata Jackii	3
Summerred	2 3
William's Pride	6

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-02-12	Apple-RosBREED-3.9K-2019	2	8.86	8.86

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21
RosBREEDSNP_SNP_AC_4873695_Lg2_RosCOS3565_MAF30_1663792_exon1	A	A	A	B	B	B	A	A	A	B	B	B	-	A	-	-	A	-	-	B
RosBREEDSNP_SNP_GA_4554201_Lg2_MDP0000519575_MAF20_MDP0000519575_exon1	A	B	-	B	B	-	-	A	B	B	-	A	-	B	A	B	A	B	A	A
RosBREEDSNP_SNP_GA_4554251_Lg2_MDP0000519575_MAF30_MDP0000519575_exon1	B	B	B	A	B	-	-	-	-	-	A	B	B	A	-	-	A	B	A	A

Alignments

Feature Name	Type	Location	Analysis
Chr02	chromosome	Chr02:4660806..5036446.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation