Mdo-HB-01-6

Haplotype Block Overview
Name Mdo-HB-01-6
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 16 18
Rome Beauty Law 10 18
Jonafree 18
Redfree 10
Spartan 10 16
Wagener 10 18
Worcester Pearmain 16
Tsugaru 18 5
Golden Delicious 4 5
Fuji 16 18
Empire 17 5
Gala 16 4
Honeycrisp 10 7
Elstar 16 4
Marshall McIntosh 10 5
Cripps Pink 17 4
Granny Smith 16 18
Jonathan 18 19
Ralls Janet 18
Delicious 16 17
Discovery 16
Prima 10 18
Fiesta 18 19
Ingrid Marie 16 5
Idared 10 19
Esopus Spitzenburg 19 23
Braeburn 17
Sansa 16 19
Lodi 10 41
James Grieve 16 23
Cripps Red 17 5
Burgundy 18 5
Akane 16 19
Ambrosia 17 4
Aurora Golden Gala 17 4
Beacon 5 7
Ben Davis 23 4 5
Cameo 17 5
Chinook 16 17
Clivia 18 23
Co-op 17 23 5
Co-op 18 18
Dayton 10 18 19
Delblush 23 5
Delcorf 4 56
Delorgue 19 4
Dolgo 41 59
Geheimrat Dr. Oldenburg 17 23
Duchess of Oldenburg 6 7
Early Cortland 10 5
Empress 10 16
F2 26829-2-2 10 23
Fantazja 10
Fireside 10 18
Fortune 17 23
Frostbite 10 6
Ginger Gold 10 4
GMAL 4327 10
GMAL 4328 10
GMAL 4329 10
GMAL 4332 10
Goodland 5 6
Haralson 10 6
Honeygold 5 6
Hudson 17 6
Jersey Black 16
Jonamac 10 19
Kerr 10 41
Lady Williams 16 17
Liberty 10 16
Linda 10 18
Liveland Raspberry 16 41
Longfield 16 23
Macoun 16 5
Malinda 10 43
Mantet 5
Melba 10 41
Melrose 17 19
MN 1627 5 7
MN 1628 6
MN 1691 18 5
MN 1706 28 46
MN 1760 43 6
MN 1764 18 43
MN 1789 18 5
MN 1802 10 17
MN 1836 10 5
MN 1837 18 7
MN 1839 5
MN 1899 10
MN 1940 10 5
MN 2016 10 6
AA-44 10 41
Monroe 18
Montgomery 17 41
Nicola 16 17
NJ 31 18 6
NJ 53 16 5
Oriole 16 6
PRI 14-126 10 5
PRI 14-510 10
PRI 1661-2 10 5
PRI 54-12 18
PRI 855-102 18
Primula 18 41
Raritan 10 16
Regent 10
Rubin 16
Russian Seedling 16 23
Sawa 10 18
Sciros 16 4
Sharon 10 7
Silken 4 6
Wildung 10 7
Splendour 17 4
State Fair 5 6
NJ 55 18 4
Co-op 29 10 4
Sunrise 10 4
Sweet Sixteen 10 17
Topaz 16 18
Vanda 18
Vista Bella 16
Wealthy 18 6
Winesap 16 23
Winter Banana 5 83
Yellow Newtown 10 7
Yellow Transparent 10
0407-0001 10 17
0407-0005 10 17
0407-0006 10 4
0407-0007 4 5
0407-0008 10 17
0408-0003 19 4
0408-0004 10 4
0408-0005 17 19
0408-0007 10 4
0408-0008 10 4
0408-0010 10 4
0408-0011 17 19
0408-0014 10 17
0408-0015 10 17
0409-0022 4 7
0409-0024 10 17
0409-0028 10 17
0409-0030 17 7
0409-0032 10 17
0409-0035 10 17
0409-0036 10 17
0409-0038 10 17
0409-0039 10 17
0409-0040 17 7
0409-0043 10 4
0409-0045 10 17
0410-0002 16 17
0410-0003 17 18
0410-0005 17
0410-0006 18 4
0410-0010 16 17
0410-0011 16 17
0410-0012 16 17
0410-0013 18 4
0410-0015 16 17
0410-0017 17 18
0410-0018 17 18
0414-0010 10
0414-0015 10 5
0414-0017 5 7
0414-0018 10 19
0414-0019 10 7
0414-0020 10 7
0414-0021 10 7
0415-0001 10 19
0415-0004 10
0415-0005 19 7
0415-0011 19 7
0415-0012 10 19
0415-0013 10 19
0415-0014 10 19
0415-0016 10
0415-0017 10
0415-0019 10 7
0415-0020 19 7
0415-0025 10 19
AE_HCxJonf-145 18 7
AE_HCXJonf-148 18 7
AE_HCxJonf-157 10 18
AE_HCXJonf-162 10 18
AE_HCXJonf-168 7
AE_HCxJonf-175 18 7
AE_HCxJonf-183 10 18
AE_HCxJonf-185 18 7
AE0118-237 10
AE0118-238 10
AE0118-239 10 5
AE0118-240 10
AE0118-243 10
AE0118-244 10
AE0118-245 10 7
AE0118-246 10 7
AE0118-249 10 7
AE0206-159 17 5
AE0206-160 17 5
AE0206-161 17 5
AE0206-162 17 6
AE0206-163 17 5
AE0206-164 17 6
AE0206-165 17 6
AE0206-167 16 5
AE0206-168 17 5
AE0206-169 16 6
AE0206-170 16 6
AE0210-146 10 4
AE0210-147 10 4
AE0210-149 10
AE0210-150 10 4
AE0210-151 10
AE0210-152 10 6
AE0210-153 10 4
AE0210-154 10 4
AE0210-157 10
AE0210-158 10 4
AE0210-159 10 4
AE0210-162 10 4
AE0210-163 10
AE0210-164 10
AE0210-165 10
AE0210-166 10 4
AE0210-168 10 4
AE0210-169 10 4
AE0210-170 10
AE0210-171 10
AE0210-172 10
AE0210-173 10
AE0210-174 10
AE0213-175 10 4
AE0213-176 10 4
AE0213-177 10
AE0213-178 10 4
AE0213-179 10
AE0213-180 10
AE0213-181 10
AE0213-182 10
AE0213-183 10
AE0213-186 10 4
AE0213-187 10
AE0213-190 10 4
AE0213-193 10
AE0213-194 10
AE0213-195 10
AE0213-196 10
AE0213-197 10
AE0213-198 4 50
AE0213-199 10
AE0213-200 10
AE0213-201 10 4
AE0213-202 10
AE0213-205 10 4
AE0213-206 10 4
AE0251-323 16 17
AE0251-327 10 17
AE0251-329 10 16
AE0251-330 10 17
AE0251-331 10 17
AE0251-342 10 17
AE0251-343 10 16
AE0406-239 4 7
AE0406-254 4 7
AE0406-258 4 7
AE0406-259 4 7
AE0406-263 10 4
AE0406-264 6 7
AE0406-266 6 7
AE0406-271 10 5
AE0406-274 10 6
AE0406-278 4 7
AE0406-281 6 7
AE0406-286 6 7
AE0406-288 4 7
AE0406-289 10 6
AE0406-294 6 7
AE0406-298 6 7
Minneiska 10 6
NJ 303955 18
PRI 612-1 10 16
Arlet 10 5
Co-op 39 77 78
Pinova 18 5
Scired 16 4
Scifresh 16 17
0409-0025 10 17
0409-0026 17 7
0409-0027 10 17
0409-0031 4 7
0409-0033 10 4
0409-0047 4 7
G-14-050 18 5
G-14-052 18
G-14-054 18
G-14-055 18
G-14-056 18 5
G-14-057 18 5
G-14-059 18 5
G-14-060 18 5
G-14-061 18
G-14-062 18
G-14-064 18 5
G-14-065 18 5
G-14-069 18 5
G-14-067 18
G-14-068 18 5
G-14-071 18 5
G-14-073 18 5
G-14-074 18
G-14-075 18
G-14-076 18
G-14-077 18
G-14-078 18 5
G-14-080 18 5
G-09-232 10 17
G-09-234 17 4
G-09-235 17 4
G-09-236 10 17
G-09-237 10 17
G-09-238 17 4
G-09-239 17 4
G-09-240 17 4
G-09-241 17 4
G-09-242 17 4
G-09-243 10 17
G-09-245 17 4
G-09-246 17 4
G-09-258 17 4
G-09-259 17 4
G-09-260 17 4
G-09-261 17 4
G-09-262 17 4
G-09-263 17 4
G-09-264 10 17
G-09-265 17 4
G-09-266 17 4
G-09-267 17 4
G-09-268 10 17
0408-0021 17 19
Wijcik McIntosh 10 5
Beauty of Bath 16 75
Priam 10 18
Northern Spy 17 6
Co-op 15 10
MN 1702 10 6
WA 2 17 4
WA 5 10 17
Pitmaston Pineapple 10 18
0411-0011 10 19
0411-0017 10 5
0411-0023 10
AE0250-086 10 17
AE0250-087 17
AE0250-089 17
AE0250-090 10 17
AE0250-092 10 16
AE0250-093 16 17
AE0250-094 16 17
AE0250-095 10 16
Sonya 17 4
Co-op 38 5
AE0250-096 19 5
AE0250-327 18 5
Co-op 30 10 19
AE0211-036 10 4
G-07-039 16 5
G-07-041 16 19
BC-8S-27-43 16 17
AE0250-091 10 7
AE0250-097 10 7
AE0250-325 10 7
AE0250-326 10 7
AE0250-329 10 7
AE0250-333 10 7
AE0250-334 10
AE0250-335 10
AE0250-336 10
AE0250-338 10 7
AE0250-341 10 7
AE0211-038 10
AE0211-043 10
AE0211-045 10 4
AE0211-051 10
G-07-010 18 19
G-07-014 16 18
G-07-015 18 19
G-07-019 18 19
G-07-020 16
G-07-024 18 19
G-07-032 16 19
G-07-033 16 19
G-07-034 18 19
G-07-035 16 19
G-07-044 16 19
AE0211-053 4 6
AE0211-054 4 5
AE0250-088 10 6
AE0250-324 6 7
AE0250-328 10 5
AE0250-331 10 5
AE0250-332 10 5
AE0250-337 10 6
AE0250-339 10 6
Minnewashta 5 6
Autumn Crisp 18 4
G-14-066 18
Lu1-11-010 16 5
Lu1-11-013 18 5
Lu1-11-016 16 18
Lu1-11-017 18 5
Lu1-11-018 16 18
NJ 90 10 19
Lord Lambourne 16
Antonovka GH 16 5
Grimes Golden 3 4
Kidds Orange Red 16
Malus baccata Hansen #2 87
Malus baccata Jackii 87
Summerred 5
William's Pride 10 41
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-6Apple-RosBREED-3.9K-201914.27.26
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091
GDsnp02580BABAAAAAAAAAAAAAAAAAAAAAABABA--BAA---AAAAB-AA-AAAAAAAA--AA----AAAABAAABAAAAAAAAAAAB--AAAAB
RosBREEDSNP_SNP_AG_9497464_Lg1_02580_MAF40_1622059_exon2--AAAAAAABABAAABABAAAA---AA----ABAA----AAAAAAAAAAAA--A--AA------AAA-----A--ABAAAAAA--A---A
RosBREEDSNP_SNP_CA_9907051_Lg1_RosCOS404_MAF20_MDP0000384319_exon1--BBBAABBBBB--BBABBA-BBBBBBBBBBBBBBBAABB-B-ABB--B-BBB-BBBBBA----ABB-BA--BBBBBBBABAB--BBABB
RosBREEDSNP_SNP_CT_115045_Lg2_328024_MAF50_328024_exon1--BBBAABABABBAABBAAB-B-ABBABBBBBBB-----BAA-BB-BAABB-----------ABA-------BBAAB-ABABABABBABB
RosBREEDSNP_SNP_CT_9505772_Lg1_02580_MAF30_MDP0000570507_exon19--BBAB--BB----BABA---B-AABB---BBA-B----BBB-BBB--BBAAB-ABBB------ABB------BBABB--BBBBA-BBBB
RosBREEDSNP_SNP_CT_9899146_Lg1_RosCOS404_MAF20_1682965_exon1--BBBBBBBBBB--ABBB---A-BBBBBBBBBBB-----BBB-BBB--BBBBA-BBBAABAB--B---BBBBAAABAAABABB--BBBBB
RosBREEDSNP_SNP_TC_16672691_Lg13_00890_MAF10_401178_exon1--BAAAAAAAAAAAAAAA---AAAABABA----A-----AAAAAA-AAAAAAAA--AA----AAA--AAABAA--AAAAAAAB--A-AAA
RosBREEDSNP_SNP_TC_9490105_Lg1_02580_MAF40_282950_exon1--AABA--ABABAAABAB---A-BB------ABBA--ABBAB---A--BA---A----------AAA-----AAABAA---BA--AA--B
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:14276947..15315910. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation