Mdo-HB-01-35

Haplotype Block Overview
Name Mdo-HB-01-35
Species Malus x domestica
Stock Haplotype [view all 426]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 5
Rome Beauty Law 3 4
Jonafree 3 9
Redfree 20 4
Spartan 4 6
Wagener 4 5
Worcester Pearmain 2 4
Tsugaru 3 4
Golden Delicious 3 4
Fuji 4 6
Empire 4
Gala 3 4
Honeycrisp 3 4
Elstar 3 5
Marshall McIntosh 4
Cripps Pink 3 5
Granny Smith 3 8
Jonathan 3 4
Ralls Janet 2 4
Delicious 4 6
Discovery 3 4
Prima 3 9
821 4 9
Fiesta 3
Ingrid Marie 3 5
Idared 3 4
Esopus Spitzenburg 3
Braeburn 3 4
Sansa 4
Lodi 4
James Grieve 3
Cripps Red 3 5
Burgundy 3 4
Akane 4
Ambrosia 3 4
Aurora Golden Gala 3 4
Beacon 21 8
Ben Davis 3 4
Cameo 4
Chinook 4
Clivia 4 5
Co-op 17 9
Co-op 18 4 5
Dayton 3 4 9
Delorgue 3 4
Dolgo 4
Geheimrat Dr. Oldenburg 4 6
Duchess of Oldenburg 4
Early Cortland 3 4
Empress 4
F2 26829-2-2 3 9
Fantazja 4
Fireside 4 6
Fortune 3 4
Frostbite 4 5
Ginger Gold 4
GMAL 4327 3 4
GMAL 4328 20 4
GMAL 4329 20 4
GMAL 4332 3 4
Goodland 3 4
Haralson 4
Honeygold 4
Hudson 3 4
Jersey Black 2 4
Jonamac 4
Keepsake 3 4
Kerr 4
Lady Williams 3 5
Liberty 4 9
Linda 4
Liveland Raspberry 2 4
Longfield 3 4
Macoun 4
Malinda 4 5
Melba 2 4
MN 1627 3 4
MN 1628 3 4
MN 1691 3 6
MN 1706 4 9
MN 1708 3
MN 1760 4
MN 1764 4
MN 1789 3
MN 1802 4 5
MN 1836 3 4
MN 1837 3 4
MN 1839 3 4
MN 1888 4 6
MN 1899 4 6
MN 1940 4
MN 2016 4 6
AA-44 3 4
Monroe 3
Montgomery 4 5
Nicola 4
NJ 31 3
NJ 53 3 4
Oriole 4
PRI 14-126 3 9
PRI 14-510 3 9
PRI 16-144 9
PRI 1661-2 4 9
PRI 54-12 4 9
PRI 855-102 9
Primula 2 9
Raritan 3 4
Regent 4
Russian Seedling 20 5
Sawa 4 9
Sciros 3 4
Sharon 4
Silken 3 4
Wildung 4
Splendour 3 4
State Fair 3 4
NJ 55 3 5
Co-op 29 4 9
Sunrise 3 4
Sweet Sixteen 3 4
Topaz 4 5
Vista Bella 4
Wealthy 4
Winesap 4 6
Winter Banana 3 9
Yellow Newtown 3 5
Yellow Transparent 4
0407-0001 3 4
0407-0005 4
0407-0006 3 4
0407-0007 3
0407-0008 4
0408-0003 3
0408-0004 4 9
0408-0005 4 9
0408-0007 3 9
0408-0008 3 9
0408-0010 3
0408-0011 3
0408-0014 3 4
0408-0015 3 4
0409-0022 3 4
0409-0024 3 4
0409-0028 3
0409-0030 4
0409-0032 3
0409-0035 3 4
0409-0036 3 4
0409-0038 3 4
0409-0039 3 4
0409-0040 4
0409-0043 3 4
0409-0045 4
0410-0002 3 4
0410-0003 4 8
0410-0005 3 4
0410-0006 3
0410-0010 4 8
0410-0011 4 8
0410-0012 4 8
0410-0013 4 8
0410-0015 3 4
0410-0017 3 4
0410-0018 4 8
0414-0010 3
0414-0015 3 4
0414-0017 3 4
0414-0018 4 9
0414-0019 3
0414-0020 3
0414-0021 3 4
0415-0001 3
0415-0004 4 9
0415-0005 3 9
0415-0011 3 9
0415-0012 3 4
0415-0013 3 4
0415-0014 3
0415-0016 3 9
0415-0017 4 9
0415-0019 3 4
0415-0020 3
0415-0025 4 9
AE_HCxJonf-145 3
AE_HCXJonf-148 3
AE_HCxJonf-157 3
AE_HCXJonf-162 3 4
AE_HCXJonf-168 3 4
AE_HCxJonf-175 3 9
AE_HCxJonf-183 3 9
AE_HCxJonf-185 3
AE0118-237 3 4
AE0118-238 3 4
AE0118-239 4
AE0118-240 4
AE0118-243 4
AE0118-244 4
AE0118-245 3 4
AE0118-246 4
AE0118-249 3 4
AE0206-159 3 6
AE0206-160 3 6
AE0206-161 3 6
AE0206-162 4
AE0206-163 3 6
AE0206-164 4 6
AE0206-165 4 6
AE0206-167 3 4
AE0206-168 4
AE0206-169 4 6
AE0206-170 4 6
AE0210-146 3 4
AE0210-147 3 4
AE0210-149 20 3
AE0210-150 3 4
AE0210-151 20 3
AE0210-152 4
AE0210-153 20 3
AE0210-154 4
AE0210-157 4
AE0210-158 20 4
AE0210-159 20 4
AE0210-162 3 4
AE0210-163 20 4
AE0210-164 20 4
AE0210-165 20 3
AE0210-166 3 4
AE0210-168 20 3
AE0210-169 20 3
AE0210-170 3 4
AE0210-171 20 4
AE0210-172 20 4
AE0210-173 3 4
AE0210-174 4
AE0213-175 3 4
AE0213-176 3 4
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 4
AE0213-180 4
AE0213-181 3 4
AE0213-182 3 4
AE0213-183 4
AE0213-186 3 4
AE0213-187 3 4
AE0213-190 3 4
AE0213-193 4
AE0213-194 4
AE0213-195 3 4
AE0213-196 4
AE0213-197 4
AE0213-198 20 4
AE0213-199 3 4
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 4
AE0213-205 3 4
AE0213-206 4
AE0251-323 3 4
AE0251-325 3 4
AE0251-327 3
AE0251-329 3
AE0251-330 3 4
AE0251-331 3 4
AE0251-342 3 4
AE0251-343 3 4
AE0406-239 3
AE0406-254 4
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 4
AE0406-264 3
AE0406-266 4
AE0406-271 3 4
AE0406-274 3 4
AE0406-278 3 4
AE0406-281 3 4
AE0406-286 3 4
AE0406-288 3 4
AE0406-289 4
AE0406-294 3
AE0406-298 3 4
Minneiska 3 6
NJ 303955 5
Arlet 3 4
Co-op 39 3 9
Pinova 4 5
Scired 3
Scifresh 3 4
0409-0025 3 4
0409-0026 3
0409-0027 4
0409-0031 3
0409-0033 3
0409-0047 3 4
G-14-050 3 5
G-14-052 3 5
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 3 4
G-14-059 4
G-14-060 3 4
G-14-061 4 5
G-14-064 4
G-14-065 4
G-14-069 4
G-14-067 3 5
G-14-068 3 5
G-14-071 3 4
G-14-073 3 4
G-14-074 4 5
G-14-075 3 5
G-14-076 3 5
G-14-077 3 4
G-14-078 3 4
G-14-080 3 4
G-09-232 3 4
G-09-233 3 4
G-09-234 4
G-09-235 3 4
G-09-236 3 4
G-09-237 3 4
G-09-238 4
G-09-239 3 4
G-09-240 4
G-09-241 3 4
G-09-242 3 4
G-09-243 4
G-09-245 4
G-09-246 3 4
G-09-258 4
G-09-259 4
G-09-260 3 4
G-09-261 3 4
G-09-262 4
G-09-263 4
G-09-264 4
G-09-265 4
G-09-266 4
G-09-267 4
G-09-268 4
0408-0021 3 4
Wijcik McIntosh 4
Beauty of Bath 3
Priam 4 9
Northern Spy 3 4
Co-op 15 3 9
MN 1702 4 6
WA 2 4
WA 5 4 9
Pitmaston Pineapple 5 6
0411-0011 3 4
0411-0017 3 9
0411-0023 4 9
AE0250-086 3 4
AE0250-087 4
AE0250-089 4
AE0250-090 4
AE0250-092 3 4
AE0250-093 3 4
AE0250-094 3
AE0250-095 3 4
Sonya 4
Co-op 38 3 9
AE0250-096 3 9
AE0250-327 3 9
Co-op 30 3 9
Jonagrimes 3 4
AE0211-036 4
G-07-039 4
PRI 14-152 3 9
PRI 47-176 3
G-07-041 4 6
BC-8S-27-43 3 4
AE0250-091 3 4
AE0250-097 3 4
AE0250-325 3 4
AE0250-326 3
AE0250-329 3 4
AE0250-333 3 4
AE0250-334 3 4
AE0250-335 3
AE0250-336 3
AE0250-338 3 4
AE0250-341 3
AE0211-038 4
AE0211-043 20 4
AE0211-045 4
AE0211-051 20 4
G-07-014 4 8
G-07-015 4 8
G-07-019 4 8
G-07-020 3 4
G-07-024 4 8
G-07-032 3 4
G-07-033 3 4
G-07-034 3 4
G-07-035 4 8
G-07-044 4 8
AE0211-053 4
AE0211-054 4 6
AE0250-088 3 6
AE0250-324 4
AE0250-328 3 4
AE0250-331 4 6
AE0250-332 3 4
AE0250-337 3 4
AE0250-339 3 4
Minnewashta 4 6
Autumn Crisp 3
G-14-066 3 5
Lu1-11-010 4 6
Lu1-11-013 4
Lu1-11-016 4 5
Lu1-11-017 4 6
Lu1-11-018 5 6
NJ 90 4 6
Lord Lambourne 3 4
Antonovka GH 4
Grimes Golden 3
Kidds Orange Red 3 6
Malus baccata Hansen #2 20 3
Malus baccata Jackii 20 4
Summerred 3 4
William's Pride 25
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-35Apple-RosBREED-3.9K-2019144.3745.95
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526
GDsnp00782AABABBBB---BB-AB--AA--AB-
RosBREEDSNP_SNP_AC_30192576_Lg1_CXE4_MAF20_1677085_exon1-AAAB-AAAAA--AAAAAAA--AAA
RosBREEDSNP_SNP_AC_30246914_Lg1_CXE4_MAF50_MDP0000473154_exon2BBABAABA---AAB--ABAA--BAB
RosBREEDSNP_SNP_AC_30649040_Lg1_320448_MAF20_320448_exon1-AABA-AB-ABAB-AAABABAB--A
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:28033063..28597852. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation