Mdo-HB-01-20

Haplotype Block Overview
Name Mdo-HB-01-20
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 5
Rome Beauty Law 4
Jonafree 10 4
Redfree 21
Spartan 5 8
Wagener 5 9
Worcester Pearmain 15 5
Tsugaru 13 5
Golden Delicious 4 5
Fuji 4 8
Empire 5 9
Gala 4 8
Honeycrisp 4 5
Elstar 4 5
Marshall McIntosh 5 9
Cripps Pink 4
Granny Smith 5 9
Jonathan 13 4
Ralls Janet 2 4
Delicious 5 8
Discovery 5
Prima 10 4
821 10 9
Fiesta 4 5
Ingrid Marie 4 5
Idared 4 9
Esopus Spitzenburg 4 5
Braeburn 5
Sansa 13 8
Lodi 5 9
James Grieve 4
Cripps Red 4 5
Burgundy 13 4
Akane 13 5
Ambrosia 4 5
Aurora Golden Gala 4 5
Beacon 4 9
Ben Davis 4 5
Cameo 5
Chinook 5 8
Clivia 13 5
Co-op 17 4 5
Co-op 18 19 9
Dayton 10 4
Delblush 5
Delcorf 5
Delorgue 13 5
Dolgo 9
Geheimrat Dr. Oldenburg 13 5
Duchess of Oldenburg 4 5
Early Cortland 4 5
Empress 5
F2 26829-2-2 10 4
Fantazja 5 9
Fireside 13
Fortune 5
Frostbite 4
Ginger Gold 4 5
GMAL 4327 5 8
GMAL 4328 8 9
GMAL 4329 9
GMAL 4332 8 9
Goodland 4 9
Haralson 5
Honeygold 5
Hudson 4 5
Jersey Black 4
Jonamac 4 5
Keepsake 4 5
Kerr 5 9
Lady Williams 4 9
Liberty 10 4
Linda 13 9
Longfield 5
Macoun 4 5
Malinda 5 9
Mantet 9
Melba 5 9
Melrose 4 5
MN 1628 4
MN 1691 13 9
MN 1706 4 5
MN 1708 5
MN 1760 13 4
MN 1764 13
MN 1789 13 5
MN 1802 4 5
MN 1836 4 5
MN 1837 13 5
MN 1839 5
MN 1888 13 5
MN 1899 13 5
MN 1940 13 5
MN 2016 4 5
AA-44 13 9
Monroe 13 4
Montgomery 5 9
Nicola 4 5
NJ 31 4
NJ 53 9
Oriole 5
PRI 14-126 10 4
PRI 14-510 10
PRI 16-144 10
PRI 1661-2 10 5
PRI 54-12 10 13
PRI 855-102 10
Primula 10 9
Raritan 4 5
Regent 5
Rubin 4
Russian Seedling 8 9
Sawa 10 9
Sciros 4 8
Sharon 4 5
Silken 5
Wildung 13 4
Splendour 4 5
State Fair 5 9
NJ 55 4 5
Co-op 29 10 5
Sunrise 4 5
Sweet Sixteen 4 5
Topaz 4
Vanda 4
Vista Bella 5 9
Wealthy 13 5
Winesap 5 8
Winter Banana 4 9
Yellow Newtown 4 9
Yellow Transparent 5
0407-0001 4 5
0407-0005 5
0407-0006 4 5
0407-0007 4
0407-0008 4 5
0408-0003 4
0408-0004 10 5
0408-0005 10 5
0408-0007 10 4
0408-0008 10 4
0408-0010 4
0408-0011 4
0408-0014 4 5
0408-0015 4 5
0409-0022 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4
0409-0036 4 5
0409-0038 4 5
0409-0039 4
0409-0040 5
0409-0043 4
0409-0045 4 5
0410-0002 5 9
0410-0003 5
0410-0005 5 9
0410-0006 4 5
0410-0010 5 9
0410-0011 5 9
0410-0012 5
0410-0013 5
0410-0015 5 9
0410-0017 5
0410-0018 5
0414-0010 4 5
0414-0015 4 5
0414-0017 4 5
0414-0018 4
0414-0019 4 5
0414-0020 4 5
0414-0021 4 5
0415-0001 4 5
0415-0004 10 4
0415-0005 10 5
0415-0011 4 5
0415-0012 4
0415-0013 4
0415-0014 4
0415-0016 10 5
0415-0017 10 4
0415-0019 4
0415-0020 4 5
0415-0025 4
AE_HCxJonf-145 10 5
AE_HCXJonf-148 4 5
AE_HCxJonf-157 4
AE_HCXJonf-162 4
AE_HCXJonf-168 5 9
AE_HCxJonf-175 10 5
AE_HCxJonf-183 10 5
AE_HCxJonf-185 4 5
AE0118-237 4 5
AE0118-238 5
AE0118-239 4 5
AE0118-240 4 5
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 5
AE0118-246 5
AE0118-249 5
AE0206-159 13 5
AE0206-160 13 5
AE0206-161 13 5
AE0206-162 5
AE0206-163 13 8
AE0206-164 5
AE0206-165 5
AE0206-167 5
AE0206-168 13 5
AE0206-169 5 8
AE0206-170 5 8
AE0210-146 4 9
AE0210-147 4 9
AE0210-149 5 9
AE0210-150 4 9
AE0210-151 5 9
AE0210-152 5
AE0210-153 4 9
AE0210-154 5 9
AE0210-157 5 9
AE0210-158 4 9
AE0210-159 5 9
AE0210-162 4 9
AE0210-163 5 9
AE0210-164 5 9
AE0210-165 4 9
AE0210-166 4 9
AE0210-168 4 9
AE0210-169 4 9
AE0210-170 4 9
AE0210-171 5 9
AE0210-172 5 9
AE0210-173 4 9
AE0210-174 5 9
AE0213-175 4 9
AE0213-176 4 8
AE0213-177 5 8
AE0213-178 5 8
AE0213-179 5 9
AE0213-180 5 8
AE0213-181 5 8
AE0213-182 5 9
AE0213-183 5 9
AE0213-186 4 8
AE0213-187 5 9
AE0213-190 5 8
AE0213-193 5 8
AE0213-194 5 8
AE0213-195 4 8
AE0213-196 5 9
AE0213-197 5 9
AE0213-198 4
AE0213-199 5 9
AE0213-200 5 8
AE0213-201 4 8
AE0213-202 5 9
AE0213-205 4 8
AE0213-206 4 9
AE0251-323 5 8
AE0251-325 4 8
AE0251-327 4 5
AE0251-329 5
AE0251-330 4 5
AE0251-331 5
AE0251-342 4 5
AE0251-343 4 8
AE0406-239 5
AE0406-254 5
AE0406-258 5
AE0406-259 5
AE0406-263 4 5
AE0406-264 5
AE0406-266 5
AE0406-271 4 5
AE0406-274 4 5
AE0406-278 5
AE0406-281 5
AE0406-286 5
AE0406-288 5
AE0406-289 4 5
AE0406-294 5
AE0406-298 5
Minneiska 5
NJ 303955 5
PRI 612-1 10 5
Arlet 4 5
Co-op 39 4
Pinova 5
Scired 4 8
Scifresh 5 8
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 13 5
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 13 5
G-14-059 4 5
G-14-060 13 5
G-14-061 4 5
G-14-062 4 5
G-14-064 4 5
G-14-065 4 5
G-14-069 4 5
G-14-067 13 5
G-14-068 13 5
G-14-071 4 5
G-14-073 13 5
G-14-074 4 5
G-14-075 13 5
G-14-076 13 5
G-14-077 13 5
G-14-078 13 5
G-14-080 13 5
G-09-232 5
G-09-233 4 5
G-09-234 4 5
G-09-235 4 5
G-09-236 4 5
G-09-237 5
G-09-238 5
G-09-239 4 5
G-09-240 4 5
G-09-241 4 5
G-09-242 4 5
G-09-243 5
G-09-245 5
G-09-246 5
G-09-258 4 5
G-09-259 4 5
G-09-260 4 5
G-09-261 4 5
G-09-262 4 5
G-09-263 4 5
G-09-264 5
G-09-265 4 5
G-09-266 4 5
G-09-267 4 5
G-09-268 5
0408-0021 4 5
Wijcik McIntosh 5 9
Beauty of Bath 6
Priam 10 13
Northern Spy 4 5
Co-op 15 10 5
MN 1702 13 4
WA 2 4 5
WA 5 10 5
Pitmaston Pineapple 5 9
0411-0011 4
0411-0017 10 4
0411-0023 10 4
AE0250-086 4 5
AE0250-087 5
AE0250-089 4 5
AE0250-090 4 5
AE0250-092 4 5
AE0250-093 5 8
AE0250-094 5 8
AE0250-095 4 8
Sonya 4 5
Co-op 38 5
AE0250-096 4 9
AE0250-327 4 9
Co-op 30 10 4
AE0211-036 4 9
G-07-039 8 9
PRI 14-152 4 5
G-07-041 13 8
BC-8S-27-43 5 8
AE0250-091 5 8
AE0250-097 5
AE0250-325 5 8
AE0250-326 5 8
AE0250-329 4 5
AE0250-333 5
AE0250-334 4 8
AE0250-335 4 8
AE0250-336 5 8
AE0250-338 5
AE0250-341 5 8
AE0211-038 5 9
AE0211-043 5 8
AE0211-051 5 8
G-07-010 13 5
G-07-014 5 8
G-07-015 5 8
G-07-019 13 5
G-07-020 8 9
G-07-024 13 5
G-07-032 13 9
G-07-033 13 9
G-07-034 13 5
G-07-035 13 5
G-07-044 13 9
AE0211-053 4 5
AE0211-054 13 4
AE0250-088 13 5
AE0250-324 4 5
AE0250-328 13 5
AE0250-331 13 4
AE0250-332 5
AE0250-337 5
AE0250-339 4 5
Minnewashta 13 5
Autumn Crisp 13 4
G-14-066 13 5
Lu1-11-010 5 8
Lu1-11-013 4 5
Lu1-11-016 4 5
Lu1-11-017 4 5
Lu1-11-018 5 8
NJ 90 5
Lord Lambourne 4 5
Antonovka GH 22 5
Grimes Golden 2 4
Kidds Orange Red 4 8
Malus baccata Hansen #2 4 9
Malus baccata Jackii 9
Summerred 15 5
William's Pride 10 9
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-20Apple-RosBREED-3.9K-2019123.5423.56
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122
GDsnp01783ABBA-AABnull-nullAABABAnull--B
RosBREEDSNP_SNP_GA_18093819_Lg1_01783_MAF10_1653849_exon8BBBBBAABBBBB-----B-BA
RosBREEDSNP_SNP_TC_18084371_Lg1_01783_MAF20_1683854_exon4--AAA-ABB--B--AABAABA
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:22310292..25531252. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation