Mdo-HB-01-19a

Haplotype Block Overview
Name Mdo-HB-01-19a
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 4 8
Jonafree 5 8
Redfree 16 20
Spartan 7 8
Wagener 4 5
Worcester Pearmain 3 7
Tsugaru 4 5
Golden Delicious 4
Fuji 5 8
Empire 4 7
Gala 4 8
Honeycrisp 4 5
Elstar 4
Marshall McIntosh 4 7
Cripps Pink 4 8
Granny Smith 4 5
Jonathan 4 5
Ralls Janet 3 5
Delicious 7 8
Discovery 4 7
Prima 4 5
821 5
Fiesta 4
Ingrid Marie 4
Idared 4 5
Braeburn 7
Sansa 5 8
Lodi 4
James Grieve 4
Cripps Red 4 8
Burgundy 4 5
Akane 5 7
Ambrosia 4 7
Aurora Golden Gala 4 7
Beacon 5 8
Ben Davis 4 7 8
Cameo 4 7
Chinook 7 8
Clivia 4 7
Co-op 17 4 7
Co-op 18 21 26
Dayton 4 5
Delblush 4 7
Delorgue 5 7
Dolgo 2 5
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 4 5
Early Cortland 4 7
Empress 7
F2 26829-2-2 4 5
Fantazja 5 7
Fireside 12 5
Fortune 4 7
Frostbite 5
Ginger Gold 4
GMAL 4327 4 8
GMAL 4328 21 5
GMAL 4329 16 20
GMAL 4332 21 5
Goodland 4 5
Haralson 4 7
Honeygold 4
Hudson 5 7
Jersey Black 4 9
Jonamac 4 7
Keepsake 5 7
Kerr 5 7
Lady Williams 5 8
Liberty 4 5
Linda 5
Liveland Raspberry 3 7
Longfield 4
Macoun 4 7
Malinda 4 7
Melba 3 7
Melrose 4 7
MN 1627 4
MN 1628 5
MN 1691 12 4
MN 1706 16 20
MN 1708 4 7
MN 1760 5
MN 1764 5
MN 1802 5 7
MN 1836 4 5
MN 1837 12 4
MN 1839 4
MN 1888 12 4
MN 1899 12 7
MN 1940 12 7
MN 2016 4
AA-44 5
Monroe 5 8
Montgomery 4
Nicola 4 7
NJ 31 8
NJ 53 4 7
Oriole 4 7
PRI 14-126 4 5
PRI 14-510 4 5
PRI 16-144 5
PRI 1661-2 5 7
PRI 54-12 5
PRI 855-102 5
Primula 3 5
Raritan 20 4
Regent 7
Rubin 4
Russian Seedling 16 20
Sawa 5
Sciros 4 8
Sharon 5 7
Silken 4
Wildung 12 5
Splendour 4 7
State Fair 4
NJ 55 4
Co-op 29 4 5
Sunrise 4
Sweet Sixteen 5 7
Topaz 4
Vanda 4
Vista Bella 7
Wealthy 4 5
Winesap 7 8
Winter Banana 5
Yellow Newtown 13 26
Yellow Transparent 4
0407-0001 4 7
0407-0005 4 7
0407-0006 4
0407-0007 4
0407-0008 4 7
0408-0003 4
0408-0004 5 7
0408-0005 5 7
0408-0007 4 5
0408-0008 4 5
0408-0010 4
0408-0011 4
0408-0014 4 7
0408-0015 4 7
0409-0022 4 7
0409-0024 5 7
0409-0028 5 7
0409-0030 5 7
0409-0032 5 7
0409-0035 4 5
0409-0036 5 7
0409-0038 5 7
0409-0039 4 5
0409-0040 4 7
0409-0043 4 5
0409-0045 5 7
0410-0002 5 7
0410-0003 4 7
0410-0005 5 7
0410-0006 4
0410-0010 5 7
0410-0011 5 7
0410-0012 4 7
0410-0013 4 7
0410-0015 5 7
0410-0017 4 7
0410-0018 4 7
0414-0010 4
0414-0015 4 5
0414-0018 4 5
0414-0019 4
0414-0020 4
0414-0021 4
0415-0001 4
0415-0004 5
0415-0005 4 5
0415-0011 4
0415-0012 4 5
0415-0013 4 5
0415-0014 4 5
0415-0016 4 5
0415-0017 5
0415-0019 4 5
0415-0020 4
0415-0025 4 5
AE_HCxJonf-145 4 5
AE_HCXJonf-148 4 8
AE_HCxJonf-157 5 8
AE_HCXJonf-162 5 8
AE_HCXJonf-168 4
AE_HCxJonf-175 4 5
AE_HCxJonf-183 4 5
AE_HCxJonf-185 4 8
AE0118-237 5 7
AE0118-238 4 7
AE0118-239 4 5
AE0118-240 5 7
AE0118-243 5 7
AE0118-244 5 7
AE0118-245 4 7
AE0118-246 4 7
AE0118-249 4 7
AE0206-159 12 7
AE0206-160 12 7
AE0206-161 12 7
AE0206-162 4 7
AE0206-163 12 8
AE0206-164 4 7
AE0206-165 4 7
AE0206-167 4 7
AE0206-168 12 7
AE0206-169 4 8
AE0206-170 4 8
AE0210-146 16 4
AE0210-147 16 4
AE0210-149 16 4
AE0210-150 16 4
AE0210-151 20 4
AE0210-152 4
AE0210-153 16 4
AE0210-154 16 4
AE0210-157 16 4
AE0210-158 20 4
AE0210-159 20 4
AE0210-162 16 4
AE0210-163 20 4
AE0210-164 20 4
AE0210-165 20 4
AE0210-166 16 4
AE0210-168 20 4
AE0210-169 20 4
AE0210-170 16 4
AE0210-171 20 4
AE0210-172 20 4
AE0210-173 16 4
AE0210-174 20 4
AE0213-175 4 5
AE0213-176 21 4
AE0213-177 21 4
AE0213-178 21 4
AE0213-179 4 5
AE0213-180 21 4
AE0213-181 21 4
AE0213-182 4 5
AE0213-183 4 5
AE0213-186 21 4
AE0213-187 4 5
AE0213-190 21 4
AE0213-193 21 4
AE0213-194 21 4
AE0213-195 21 4
AE0213-196 4 5
AE0213-197 4 5
AE0213-198 4
AE0213-199 4 5
AE0213-200 21 4
AE0213-201 21 4
AE0213-202 4 5
AE0213-205 21 4
AE0213-206 4 5
AE0251-323 7 8
AE0251-325 5 8
AE0251-327 5 7
AE0251-329 7
AE0251-330 5 7
AE0251-331 7
AE0251-342 5 7
AE0251-343 5 8
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 4 5
AE0406-264 4
AE0406-266 4
AE0406-271 4 5
AE0406-274 4 5
AE0406-278 4
AE0406-281 4
AE0406-286 4
AE0406-288 4
AE0406-289 4 5
AE0406-294 4
AE0406-298 4
Minneiska 4
NJ 303955 4
PRI 612-1 5 7
Arlet 4
Co-op 39 4
Pinova 4
Scired 4 8
Scifresh 7 8
0409-0025 5 7
0409-0026 4
0409-0027 5 7
0409-0031 4
0409-0033 4
0409-0047 4
G-14-050 4 5
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4 5
G-14-059 4 5
G-14-060 4 5
G-14-061 4 5
G-14-062 4 5
G-14-064 4 5
G-14-065 4 5
G-14-069 4 5
G-14-067 4 5
G-14-068 4 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4 5
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 4 5
G-09-232 4 7
G-09-233 4 7
G-09-234 4 7
G-09-235 4 7
G-09-236 4 7
G-09-237 4 7
G-09-238 4 7
G-09-239 4 7
G-09-240 4 7
G-09-241 4 7
G-09-242 4 7
G-09-243 4 7
G-09-245 4 7
G-09-246 4 7
G-09-258 4 7
G-09-259 4 7
G-09-260 4 7
G-09-261 4 7
G-09-262 4 7
G-09-263 4 7
G-09-264 4 7
G-09-265 4 7
G-09-266 4 7
G-09-267 4 7
G-09-268 4 7
0408-0021 4 7
Wijcik McIntosh 12 13
Beauty of Bath 4
Priam 5
Northern Spy 5 7
Co-op 15 5 7
MN 1702 12 5
WA 2 4 7
WA 5 5 7
Pitmaston Pineapple 5 7
0411-0011 4
0411-0017 4 5
0411-0023 4 5
AE0250-086 5 7
AE0250-087 7
AE0250-089 5 7
AE0250-090 5 7
AE0250-092 5 7
AE0250-093 7 8
AE0250-094 7 8
AE0250-095 5 8
Sonya 4 7
Co-op 38 4 7
AE0250-096 4
AE0250-327 4
Co-op 30 4 5
Jonagrimes 2 5
AE0211-036 4 5
G-07-039 5 8
PRI 14-152 4
PRI 47-176 4 5
G-07-041 5 8
BC-8S-27-43 7 8
AE0250-091 4 8
AE0250-097 4
AE0250-325 4 8
AE0250-326 4 8
AE0250-329 4 5
AE0250-333 4
AE0250-334 5 8
AE0250-335 5 8
AE0250-336 4 8
AE0250-338 4
AE0250-341 4 8
AE0211-038 4 5
AE0211-043 21 4
AE0211-045 4 5
AE0211-051 21 4
G-07-010 4 5
G-07-014 4 8
G-07-015 4 8
G-07-019 4 5
G-07-020 5 8
G-07-024 4 5
G-07-032 5
G-07-033 5
G-07-034 4 5
G-07-035 4 5
G-07-044 5
AE0211-053 4
AE0211-054 12 4
AE0250-088 12 4
AE0250-324 4 5
AE0250-328 12 4
AE0250-331 12 5
AE0250-332 4
AE0250-337 4
AE0250-339 4 5
Minnewashta 12 4
Autumn Crisp 4 5
G-14-066 4 5
Lu1-11-010 7 8
Lu1-11-013 5 7
Lu1-11-016 4 5
Lu1-11-017 5 7
Lu1-11-018 4 8
NJ 90 7
Lord Lambourne 4 7
Antonovka GH 25 7
Grimes Golden 2 4
Kidds Orange Red 4 8
Malus baccata Hansen #2 16 8
Malus baccata Jackii 5
Summerred 4
William's Pride 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-19aApple-RosBREED-3.9K-2019123.0223.02
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031
RosBREEDSNP_SNP_AG_18067488_Lg1_01783_MAF40_MDP0000211915_exon1BAAB-BABABBAABB-ABBAAB-AB--ABA
RosBREEDSNP_SNP_GT_18056530_Lg1_01783_MAF30_1629293_exon3--BA-BB-BABBBAAB--BB--BAAABABA
RosBREEDSNP_SNP_GT_18064090_Lg1_01783_MAF50_708296_exon1ABBABABABABA--A-BAAA--BBBAAABA
RosBREEDSNP_SNP_TC_17912183_Lg1_00440_MAF40_1634418_exon1AAAB-ABB--AAABAA--BB--ABBBAABB
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:22149046..22288417. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation