Mdo-HB-01-18a

Haplotype Block Overview
Name Mdo-HB-01-18a
Species Malus x domestica
Stock Haplotype [view all 434]
Haplotype [view all]
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 4
Rome Beauty Law 3
Jonafree 15 3
Redfree 22 4
Spartan 3
Wagener 3 5
Worcester Pearmain 4
Tsugaru 3
Golden Delicious 3
Fuji 3 8
Empire 3 5
Gala 3
Honeycrisp 4 5
Elstar 3
Marshall McIntosh 3 5
Cripps Pink 3
Granny Smith 3 5
Jonathan 3 4
Ralls Janet 2 8
Delicious 3
Discovery 4 9
Prima 15 4
821 15
Fiesta 3 4
Ingrid Marie 3 4
Idared 4 5
Esopus Spitzenburg 3 4
Braeburn 3
Sansa 3 4
Lodi 3
James Grieve 4
Cripps Red 3
Burgundy 3 4
Akane 4
Ambrosia 3
Aurora Golden Gala 3
Beacon 25 26
Ben Davis 3 4
Cameo 3
Chinook 3
Clivia 3
Co-op 17 3 4
Co-op 18 22 3
Dayton 22 3 4
Delblush 3
Delcorf 3
Delorgue 3 4
Dolgo 17 3
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 4 5
Early Cortland 3
Empress 3
F2 26829-2-2 15 4
Fantazja 3 5
Fireside 3 4
Fortune 3
Frostbite 5 8
Ginger Gold 3
GMAL 4327 3 4
GMAL 4328 4 5
GMAL 4329 3
GMAL 4332 4 5
Goodland 5
Haralson 3 4
Honeygold 3 4
Hudson 3 5
Jersey Black 24 4
Jolana 3
Jonamac 3 4
Keepsake 3 5
Kerr 17 3
Lady Williams 3 5
Liberty 15 4
Linda 3 5
Longfield 3 4
Macoun 3 4
Malinda 3
Mantet 4
Melba 3
Melrose 3 4
MN 1627 3 4
MN 1628 5
MN 1706 17 29
MN 1708 3
MN 1760 3 5
MN 1764 3
MN 1789 3 4
MN 1802 3 8
MN 1836 4 5
MN 1837 4
MN 1839 3 4
MN 1888 4
MN 1899 3 4
MN 1940 3 4
MN 2016 4 5
AA-44 3 5
Monroe 3
Montgomery 3
Nicola 3
NJ 31 3
NJ 53 4
Oriole 3 4
PRI 14-126 15 3
PRI 14-510 15 3
PRI 16-144 15
PRI 1661-2 15 3
PRI 54-12 15 3
PRI 855-102 15
Primula 15 3
Raritan 3
Regent 3
Rubin 3 4
Russian Seedling 4
Sawa 15 5
Sciros 3
Sharon 3 5
Silken 3 4
Wildung 4 5
Splendour 3
State Fair 4
NJ 55 3
Co-op 29 16 3
Sunrise 3
Sweet Sixteen 3 5
Topaz 3 4
Vanda 3 4
Vista Bella 3 4
Wealthy 3 4
Winesap 3
Winter Banana 4 8
Yellow Newtown 35 36
Yellow Transparent 3
0407-0001 3 5
0407-0005 3
0407-0006 3
0407-0007 3 5
0407-0008 3 5
0408-0003 3 4
0408-0004 15 3
0408-0005 15 3
0408-0007 15 3
0408-0008 15 3
0408-0010 3 4
0408-0011 3 4
0408-0014 3 4
0408-0015 3 4
0409-0022 3 4
0409-0024 3 5
0409-0028 3 5
0409-0030 3 5
0409-0032 3 5
0409-0035 3 5
0409-0036 3 5
0409-0038 3 5
0409-0039 3 5
0409-0040 3 4
0409-0043 3 5
0409-0045 3 5
0410-0002 3 5
0410-0003 3
0410-0005 3 5
0410-0006 3
0410-0010 3 5
0410-0011 3 5
0410-0012 3
0410-0013 3
0410-0015 3 5
0410-0017 3
0410-0018 3
0414-0010 5
0414-0015 3 5
0414-0017 3 4
0414-0018 4 5
0414-0019 4 5
0414-0020 4
0414-0021 4 5
0415-0001 4
0415-0004 15 5
0415-0005 15 4
0415-0011 4
0415-0012 4 5
0415-0013 4 5
0415-0014 4 5
0415-0016 15 4
0415-0017 15 5
0415-0019 4 5
0415-0020 4
0415-0025 4 5
AE_HCxJonf-145 15 4
AE_HCXJonf-148 3 4
AE_HCxJonf-157 3 5
AE_HCXJonf-162 3 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 15 4
AE_HCxJonf-183 15 4
AE_HCxJonf-185 3 4
AE0118-237 3 5
AE0118-238 3 5
AE0118-239 3 5
AE0118-240 3 5
AE0118-243 3 5
AE0118-244 3 5
AE0118-245 3 4
AE0118-246 3 4
AE0118-249 3 4
AE0206-159 3 4
AE0206-160 3 4
AE0206-161 3 4
AE0206-162 3 4
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3 4
AE0206-167 3 4
AE0206-168 3 4
AE0206-169 3 4
AE0206-170 3 4
AE0210-146 3
AE0210-147 3
AE0210-149 3
AE0210-150 3
AE0210-151 3
AE0210-152 3 4
AE0210-153 3
AE0210-154 3
AE0210-157 3
AE0210-158 3
AE0210-159 3
AE0210-162 3
AE0210-163 3
AE0210-164 3
AE0210-165 3
AE0210-166 3
AE0210-168 3
AE0210-169 3
AE0210-170 3
AE0210-171 3
AE0210-172 3
AE0210-173 3
AE0210-174 3
AE0213-175 3 5
AE0213-176 3 4
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 3 5
AE0213-180 3 4
AE0213-181 3 4
AE0213-182 3 5
AE0213-183 3 5
AE0213-186 3 4
AE0213-187 3 5
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3 4
AE0213-196 3 5
AE0213-197 3 5
AE0213-198 3 4
AE0213-199 3 5
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 3 5
AE0213-205 3 4
AE0213-206 3 5
AE0251-323 3
AE0251-325 3 5
AE0251-327 3 5
AE0251-329 3
AE0251-330 3 5
AE0251-331 3
AE0251-342 3 5
AE0251-343 3 5
AE0406-239 3 4
AE0406-254 4
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 4 5
AE0406-264 3 4
AE0406-266 4
AE0406-271 3 5
AE0406-274 3 5
AE0406-278 3 4
AE0406-281 4
AE0406-286 4
AE0406-288 3 4
AE0406-289 4 5
AE0406-294 3 4
AE0406-298 4
Minneiska 4 5
NJ 303955 3
MN 1691 4 5
PRI 612-1 15 3
Arlet 3 5
Co-op 39 4
Pinova 3
Scired 3
Scifresh 3
0409-0025 3 5
0409-0026 3 4
0409-0027 3 5
0409-0031 3 4
0409-0033 3 4
0409-0047 3 4
G-14-050 3
G-14-052 3 8
G-14-054 3 8
G-14-055 3 8
G-14-056 3 8
G-14-057 3
G-14-059 3 8
G-14-060 3
G-14-061 3 8
G-14-062 3 8
G-14-064 3 8
G-14-065 3 8
G-14-069 3 8
G-14-067 3 8
G-14-068 3
G-14-071 3 8
G-14-073 3
G-14-074 3 8
G-14-075 3
G-14-076 3
G-14-077 3
G-14-078 3
G-14-080 3
G-09-232 3
G-09-233 3
G-09-234 3
G-09-235 3
G-09-236 3
G-09-237 3
G-09-238 3
G-09-239 3
G-09-240 3
G-09-241 3
G-09-242 3
G-09-243 3
G-09-245 3
G-09-246 3
G-09-258 3
G-09-259 3
G-09-260 3
G-09-261 3
G-09-262 3
G-09-263 3
G-09-264 3
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 3
0408-0021 3 4
Wijcik McIntosh 22 30
Beauty of Bath 9
Priam 15 3
Northern Spy 3 5
Co-op 15 17 3
MN 1702 4 5
WA 2 3
WA 5 17 3
Pitmaston Pineapple 3 5
0411-0011 4 5
0411-0017 15 5
0411-0023 15 5
AE0250-086 3 5
AE0250-087 3
AE0250-089 3 5
AE0250-090 3 5
AE0250-092 3 5
AE0250-093 3
AE0250-094 3
AE0250-095 3 5
Sonya 3
Co-op 38 3
AE0250-096 3 5
AE0250-327 3 5
Co-op 30 15 4
Jonagrimes 3 5
AE0211-036 3 5
G-07-039 22 3
PRI 14-152 3 4
G-07-041 3 4
BC-8S-27-43 3
AE0250-091 4
AE0250-097 3 4
AE0250-325 4
AE0250-326 4
AE0250-329 3 5
AE0250-333 3 4
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 4
AE0250-338 3 4
AE0250-341 4
AE0211-038 3 5
AE0211-043 3 4
AE0211-045 3 5
AE0211-051 3 4
G-07-010 3 4
G-07-014 3
G-07-015 3
G-07-019 3 4
G-07-020 3 5
G-07-024 3 4
G-07-032 4 5
G-07-033 4 5
G-07-034 3 4
G-07-035 3 4
G-07-044 4 5
AE0211-053 3 4
AE0211-054 3 4
AE0250-088 4
AE0250-324 4 5
AE0250-328 4
AE0250-331 4 5
AE0250-332 4
AE0250-337 4
AE0250-339 4 5
Minnewashta 4
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3
Lu1-11-013 3 8
Lu1-11-016 3 8
Lu1-11-017 3 8
Lu1-11-018 3
NJ 90 3
Lord Lambourne 4
Antonovka GH 4
Grimes Golden 3
Kidds Orange Red 3 4
Malus baccata Hansen #2 22 4
Malus baccata Jackii 16
Summerred 3
William's Pride 22 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-18aApple-RosBREED-3.9K-2019120.6620.66
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637
RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1AAAB--BAB----BBBAB--BBBBA-BAAAA-BBA-
RosBREEDSNP_SNP_CT_17245435_Lg1_RosCOS3372_MAF10_1674115_exon1BBBA--ABAABBABBBBAB-BAAAB--AABBBABA-
RosBREEDSNP_SNP_CT_17248573_Lg1_RosCOS3372_MAF40_MDP0000577125_exon3-BBBBBAB-BBBBBBBBBBBBB-BB-BBB--BBBB-
RosBREEDSNP_SNP_GA_17238705_Lg1_RosCOS3372_MAF10_180981_exon1BBBA--BBBAB--BBB--B-BAABA-AAABBBAAB-
RosBREEDSNP_SNP_TC_17274400_Lg1_RosCOS3372_MAF40_MDP0000637622_exon1-ABBBAB--BAABnull-AAB--B--BAABBABABABBB
Relationships

This haplotype_block contains the following genetic_marker feature(s):

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1Malus x domesticagenetic_marker
RosBREEDSNP_SNP_GA_17238705_Lg1_RosCOS3372_MAF10_180981_exon1RosBREEDSNP_SNP_GA_17238705_Lg1_RosCOS3372_MAF10_180981_exon1Malus x domesticagenetic_marker
RosBREEDSNP_SNP_TC_17274400_Lg1_RosCOS3372_MAF40_MDP0000637622_exon1RosBREEDSNP_SNP_TC_17274400_Lg1_RosCOS3372_MAF40_MDP0000637622_exon1Malus x domesticagenetic_marker
RosBREEDSNP_SNP_CT_17248573_Lg1_RosCOS3372_MAF40_MDP0000577125_exon3RosBREEDSNP_SNP_CT_17248573_Lg1_RosCOS3372_MAF40_MDP0000577125_exon3Malus x domesticagenetic_marker
RosBREEDSNP_SNP_CT_17245435_Lg1_RosCOS3372_MAF10_1674115_exon1RosBREEDSNP_SNP_CT_17245435_Lg1_RosCOS3372_MAF10_1674115_exon1Malus x domesticagenetic_marker


The following haplotype feature(s) are a variant of this haplotype_block:

Feature NameUnique NameSpeciesType
2Mdo-HB-01-18a_2Malus x domesticahaplotype
3Mdo-HB-01-18a_3Malus x domesticahaplotype
4Mdo-HB-01-18a_4Malus x domesticahaplotype
5Mdo-HB-01-18a_5Malus x domesticahaplotype
6Mdo-HB-01-18a_6Malus x domesticahaplotype
7Mdo-HB-01-18a_7Malus x domesticahaplotype
8Mdo-HB-01-18a_8Malus x domesticahaplotype
9Mdo-HB-01-18a_9Malus x domesticahaplotype
10Mdo-HB-01-18a_10Malus x domesticahaplotype
11Mdo-HB-01-18a_11Malus x domesticahaplotype
12Mdo-HB-01-18a_12Malus x domesticahaplotype
13Mdo-HB-01-18a_13Malus x domesticahaplotype
14Mdo-HB-01-18a_14Malus x domesticahaplotype
15Mdo-HB-01-18a_15Malus x domesticahaplotype
16Mdo-HB-01-18a_16Malus x domesticahaplotype
17Mdo-HB-01-18a_17Malus x domesticahaplotype
18Mdo-HB-01-18a_18Malus x domesticahaplotype
19Mdo-HB-01-18a_19Malus x domesticahaplotype
20Mdo-HB-01-18a_20Malus x domesticahaplotype
21Mdo-HB-01-18a_21Malus x domesticahaplotype
22Mdo-HB-01-18a_22Malus x domesticahaplotype
23Mdo-HB-01-18a_23Malus x domesticahaplotype
24Mdo-HB-01-18a_24Malus x domesticahaplotype
25Mdo-HB-01-18a_25Malus x domesticahaplotype
26Mdo-HB-01-18a_26Malus x domesticahaplotype
27Mdo-HB-01-18a_27Malus x domesticahaplotype
28Mdo-HB-01-18a_28Malus x domesticahaplotype
29Mdo-HB-01-18a_29Malus x domesticahaplotype
30Mdo-HB-01-18a_30Malus x domesticahaplotype
31Mdo-HB-01-18a_31Malus x domesticahaplotype
32Mdo-HB-01-18a_32Malus x domesticahaplotype
33Mdo-HB-01-18a_33Malus x domesticahaplotype
34Mdo-HB-01-18a_34Malus x domesticahaplotype
35Mdo-HB-01-18a_35Malus x domesticahaplotype
36Mdo-HB-01-18a_36Malus x domesticahaplotype
37Mdo-HB-01-18a_37Malus x domesticahaplotype
38Mdo-HB-01-18a_38Malus x domesticahaplotype
39Mdo-HB-01-18a_39Malus x domesticahaplotype
40Mdo-HB-01-18a_40Malus x domesticahaplotype
41Mdo-HB-01-18a_41Malus x domesticahaplotype
42Mdo-HB-01-18a_42Malus x domesticahaplotype
43Mdo-HB-01-18a_43Malus x domesticahaplotype
44Mdo-HB-01-18a_44Malus x domesticahaplotype
45Mdo-HB-01-18a_45Malus x domesticahaplotype
46Mdo-HB-01-18a_46Malus x domesticahaplotype
47Mdo-HB-01-18a_47Malus x domesticahaplotype
48Mdo-HB-01-18a_48Malus x domesticahaplotype
49Mdo-HB-01-18a_49Malus x domesticahaplotype
50Mdo-HB-01-18a_50Malus x domesticahaplotype
51Mdo-HB-01-18a_51Malus x domesticahaplotype
52Mdo-HB-01-18a_52Malus x domesticahaplotype
53Mdo-HB-01-18a_53Malus x domesticahaplotype
54Mdo-HB-01-18a_54Malus x domesticahaplotype
55Mdo-HB-01-18a_55Malus x domesticahaplotype
56Mdo-HB-01-18a_56Malus x domesticahaplotype
57Mdo-HB-01-18a_57Malus x domesticahaplotype
58Mdo-HB-01-18a_58Malus x domesticahaplotype
59Mdo-HB-01-18a_59Malus x domesticahaplotype
60Mdo-HB-01-18a_60Malus x domesticahaplotype
61Mdo-HB-01-18a_61Malus x domesticahaplotype
62Mdo-HB-01-18a_62Malus x domesticahaplotype
63Mdo-HB-01-18a_63Malus x domesticahaplotype
64Mdo-HB-01-18a_64Malus x domesticahaplotype
65Mdo-HB-01-18a_65Malus x domesticahaplotype
66Mdo-HB-01-18a_66Malus x domesticahaplotype
67Mdo-HB-01-18a_67Malus x domesticahaplotype
68Mdo-HB-01-18a_68Malus x domesticahaplotype
69Mdo-HB-01-18a_69Malus x domesticahaplotype
70Mdo-HB-01-18a_70Malus x domesticahaplotype
71Mdo-HB-01-18a_71Malus x domesticahaplotype
72Mdo-HB-01-18a_72Malus x domesticahaplotype
73Mdo-HB-01-18a_73Malus x domesticahaplotype
74Mdo-HB-01-18a_74Malus x domesticahaplotype
75Mdo-HB-01-18a_75Malus x domesticahaplotype
76Mdo-HB-01-18a_76Malus x domesticahaplotype
77Mdo-HB-01-18a_77Malus x domesticahaplotype
78Mdo-HB-01-18a_78Malus x domesticahaplotype
79Mdo-HB-01-18a_79Malus x domesticahaplotype
80Mdo-HB-01-18a_80Malus x domesticahaplotype
81Mdo-HB-01-18a_81Malus x domesticahaplotype
82Mdo-HB-01-18a_82Malus x domesticahaplotype
83Mdo-HB-01-18a_83Malus x domesticahaplotype
84Mdo-HB-01-18a_84Malus x domesticahaplotype
85Mdo-HB-01-18a_85Malus x domesticahaplotype
86Mdo-HB-01-18a_86Malus x domesticahaplotype
87Mdo-HB-01-18a_87Malus x domesticahaplotype
88Mdo-HB-01-18a_88Malus x domesticahaplotype
89Mdo-HB-01-18a_89Malus x domesticahaplotype
90Mdo-HB-01-18a_90Malus x domesticahaplotype
91Mdo-HB-01-18a_91Malus x domesticahaplotype
92Mdo-HB-01-18a_92Malus x domesticahaplotype
93Mdo-HB-01-18a_93Malus x domesticahaplotype
94Mdo-HB-01-18a_94Malus x domesticahaplotype
95Mdo-HB-01-18a_95Malus x domesticahaplotype
96Mdo-HB-01-18a_96Malus x domesticahaplotype
97Mdo-HB-01-18a_97Malus x domesticahaplotype
98Mdo-HB-01-18a_98Malus x domesticahaplotype
99Mdo-HB-01-18a_99Malus x domesticahaplotype
100Mdo-HB-01-18a_100Malus x domesticahaplotype
101Mdo-HB-01-18a_101Malus x domesticahaplotype
102Mdo-HB-01-18a_102Malus x domesticahaplotype
103Mdo-HB-01-18a_103Malus x domesticahaplotype
104Mdo-HB-01-18a_104Malus x domesticahaplotype
105Mdo-HB-01-18a_105Malus x domesticahaplotype
106Mdo-HB-01-18a_106Malus x domesticahaplotype
107Mdo-HB-01-18a_107Malus x domesticahaplotype
108Mdo-HB-01-18a_108Malus x domesticahaplotype
109Mdo-HB-01-18a_109Malus x domesticahaplotype
110Mdo-HB-01-18a_110Malus x domesticahaplotype
111Mdo-HB-01-18a_111Malus x domesticahaplotype
112Mdo-HB-01-18a_112Malus x domesticahaplotype
113Mdo-HB-01-18a_113Malus x domesticahaplotype
114Mdo-HB-01-18a_114Malus x domesticahaplotype
115Mdo-HB-01-18a_115Malus x domesticahaplotype
116Mdo-HB-01-18a_116Malus x domesticahaplotype
117Mdo-HB-01-18a_117Malus x domesticahaplotype
118Mdo-HB-01-18a_118Malus x domesticahaplotype
119Mdo-HB-01-18a_119Malus x domesticahaplotype
120Mdo-HB-01-18a_120Malus x domesticahaplotype
121Mdo-HB-01-18a_121Malus x domesticahaplotype
122Mdo-HB-01-18a_122Malus x domesticahaplotype
123Mdo-HB-01-18a_123Malus x domesticahaplotype
124Mdo-HB-01-18a_124Malus x domesticahaplotype
125Mdo-HB-01-18a_125Malus x domesticahaplotype
126Mdo-HB-01-18a_126Malus x domesticahaplotype
127Mdo-HB-01-18a_127Malus x domesticahaplotype
128Mdo-HB-01-18a_128Malus x domesticahaplotype
129Mdo-HB-01-18a_129Malus x domesticahaplotype
130Mdo-HB-01-18a_130Malus x domesticahaplotype
131Mdo-HB-01-18a_131Malus x domesticahaplotype
132Mdo-HB-01-18a_132Malus x domesticahaplotype
133Mdo-HB-01-18a_133Malus x domesticahaplotype
134Mdo-HB-01-18a_134Malus x domesticahaplotype
135Mdo-HB-01-18a_135Malus x domesticahaplotype
136Mdo-HB-01-18a_136Malus x domesticahaplotype
137Mdo-HB-01-18a_137Malus x domesticahaplotype
138Mdo-HB-01-18a_138Malus x domesticahaplotype
139Mdo-HB-01-18a_139Malus x domesticahaplotype
140Mdo-HB-01-18a_140Malus x domesticahaplotype
141Mdo-HB-01-18a_141Malus x domesticahaplotype
142Mdo-HB-01-18a_142Malus x domesticahaplotype
143Mdo-HB-01-18a_143Malus x domesticahaplotype
144Mdo-HB-01-18a_144Malus x domesticahaplotype
145Mdo-HB-01-18a_145Malus x domesticahaplotype
146Mdo-HB-01-18a_146Malus x domesticahaplotype
147Mdo-HB-01-18a_147Malus x domesticahaplotype
148Mdo-HB-01-18a_148Malus x domesticahaplotype
149Mdo-HB-01-18a_149Malus x domesticahaplotype
150Mdo-HB-01-18a_150Malus x domesticahaplotype
151Mdo-HB-01-18a_151Malus x domesticahaplotype
152Mdo-HB-01-18a_152Malus x domesticahaplotype
153Mdo-HB-01-18a_153Malus x domesticahaplotype
154Mdo-HB-01-18a_154Malus x domesticahaplotype
155Mdo-HB-01-18a_155Malus x domesticahaplotype
156Mdo-HB-01-18a_156Malus x domesticahaplotype
157Mdo-HB-01-18a_157Malus x domesticahaplotype
158Mdo-HB-01-18a_158Malus x domesticahaplotype
159Mdo-HB-01-18a_159Malus x domesticahaplotype
160Mdo-HB-01-18a_160Malus x domesticahaplotype
161Mdo-HB-01-18a_161Malus x domesticahaplotype
162Mdo-HB-01-18a_162Malus x domesticahaplotype
163Mdo-HB-01-18a_163Malus x domesticahaplotype
164Mdo-HB-01-18a_164Malus x domesticahaplotype
165Mdo-HB-01-18a_165Malus x domesticahaplotype


Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:21502954..21538084. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation