Mdo-HB-01-18a

Haplotype Block Overview
Name Mdo-HB-01-18a
Species Malus x domestica
Stock Haplotype [view all 434]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 4
Rome Beauty Law 3
Jonafree 15 3
Redfree 22 4
Spartan 3
Wagener 3 5
Worcester Pearmain 4
Tsugaru 3
Golden Delicious 3
Fuji 3 8
Empire 3 5
Gala 3
Honeycrisp 4 5
Elstar 3
Marshall McIntosh 3 5
Cripps Pink 3
Granny Smith 3 5
Jonathan 3 4
Ralls Janet 2 8
Delicious 3
Discovery 4 9
Prima 15 4
821 15
Fiesta 3 4
Ingrid Marie 3 4
Idared 4 5
Esopus Spitzenburg 3 4
Braeburn 3
Sansa 3 4
Lodi 3
James Grieve 4
Cripps Red 3
Burgundy 3 4
Akane 4
Ambrosia 3
Aurora Golden Gala 3
Beacon 25 26
Ben Davis 3 4
Cameo 3
Chinook 3
Clivia 3
Co-op 17 3 4
Co-op 18 22 3
Dayton 22 3 4
Delblush 3
Delcorf 3
Delorgue 3 4
Dolgo 17 3
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 4 5
Early Cortland 3
Empress 3
F2 26829-2-2 15 4
Fantazja 3 5
Fireside 3 4
Fortune 3
Frostbite 5 8
Ginger Gold 3
GMAL 4327 3 4
GMAL 4328 4 5
GMAL 4329 3
GMAL 4332 4 5
Goodland 5
Haralson 3 4
Honeygold 3 4
Hudson 3 5
Jersey Black 24 4
Jolana 3
Jonamac 3 4
Keepsake 3 5
Kerr 17 3
Lady Williams 3 5
Liberty 15 4
Linda 3 5
Longfield 3 4
Macoun 3 4
Malinda 3
Mantet 4
Melba 3
Melrose 3 4
MN 1627 3 4
MN 1628 5
MN 1691 4 5
MN 1706 17 29
MN 1708 3
MN 1760 3 5
MN 1764 3
MN 1789 3 4
MN 1802 3 8
MN 1836 4 5
MN 1837 4
MN 1839 3 4
MN 1888 4
MN 1899 3 4
MN 1940 3 4
MN 2016 4 5
AA-44 3 5
Monroe 3
Montgomery 3
Nicola 3
NJ 31 3
NJ 53 4
Oriole 3 4
PRI 14-126 15 3
PRI 14-510 15 3
PRI 16-144 15
PRI 1661-2 15 3
PRI 54-12 15 3
PRI 855-102 15
Primula 15 3
Raritan 3
Regent 3
Rubin 3 4
Russian Seedling 4
Sawa 15 5
Sciros 3
Sharon 3 5
Silken 3 4
Wildung 4 5
Splendour 3
State Fair 4
NJ 55 3
Co-op 29 16 3
Sunrise 3
Sweet Sixteen 3 5
Topaz 3 4
Vanda 3 4
Vista Bella 3 4
Wealthy 3 4
Winesap 3
Winter Banana 4 8
Yellow Newtown 35 36
Yellow Transparent 3
0407-0001 3 5
0407-0005 3
0407-0006 3
0407-0007 3 5
0407-0008 3 5
0408-0003 3 4
0408-0004 15 3
0408-0005 15 3
0408-0007 15 3
0408-0008 15 3
0408-0010 3 4
0408-0011 3 4
0408-0014 3 4
0408-0015 3 4
0409-0022 3 4
0409-0024 3 5
0409-0028 3 5
0409-0030 3 5
0409-0032 3 5
0409-0035 3 5
0409-0036 3 5
0409-0038 3 5
0409-0039 3 5
0409-0040 3 4
0409-0043 3 5
0409-0045 3 5
0410-0002 3 5
0410-0003 3
0410-0005 3 5
0410-0006 3
0410-0010 3 5
0410-0011 3 5
0410-0012 3
0410-0013 3
0410-0015 3 5
0410-0017 3
0410-0018 3
0414-0010 5
0414-0015 3 5
0414-0017 3 4
0414-0018 4 5
0414-0019 4 5
0414-0020 4
0414-0021 4 5
0415-0001 4
0415-0004 15 5
0415-0005 15 4
0415-0011 4
0415-0012 4 5
0415-0013 4 5
0415-0014 4 5
0415-0016 15 4
0415-0017 15 5
0415-0019 4 5
0415-0020 4
0415-0025 4 5
AE_HCxJonf-145 15 4
AE_HCXJonf-148 3 4
AE_HCxJonf-157 3 5
AE_HCXJonf-162 3 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 15 4
AE_HCxJonf-183 15 4
AE_HCxJonf-185 3 4
AE0118-237 3 5
AE0118-238 3 5
AE0118-239 3 5
AE0118-240 3 5
AE0118-243 3 5
AE0118-244 3 5
AE0118-245 3 4
AE0118-246 3 4
AE0118-249 3 4
AE0206-159 3 4
AE0206-160 3 4
AE0206-161 3 4
AE0206-162 3 4
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3 4
AE0206-167 3 4
AE0206-168 3 4
AE0206-169 3 4
AE0206-170 3 4
AE0210-146 3
AE0210-147 3
AE0210-149 3
AE0210-150 3
AE0210-151 3
AE0210-152 3 4
AE0210-153 3
AE0210-154 3
AE0210-157 3
AE0210-158 3
AE0210-159 3
AE0210-162 3
AE0210-163 3
AE0210-164 3
AE0210-165 3
AE0210-166 3
AE0210-168 3
AE0210-169 3
AE0210-170 3
AE0210-171 3
AE0210-172 3
AE0210-173 3
AE0210-174 3
AE0213-175 3 5
AE0213-176 3 4
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 3 5
AE0213-180 3 4
AE0213-181 3 4
AE0213-182 3 5
AE0213-183 3 5
AE0213-186 3 4
AE0213-187 3 5
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3 4
AE0213-196 3 5
AE0213-197 3 5
AE0213-198 3 4
AE0213-199 3 5
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 3 5
AE0213-205 3 4
AE0213-206 3 5
AE0251-323 3
AE0251-325 3 5
AE0251-327 3 5
AE0251-329 3
AE0251-330 3 5
AE0251-331 3
AE0251-342 3 5
AE0251-343 3 5
AE0406-239 3 4
AE0406-254 4
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 4 5
AE0406-264 3 4
AE0406-266 4
AE0406-271 3 5
AE0406-274 3 5
AE0406-278 3 4
AE0406-281 4
AE0406-286 4
AE0406-288 3 4
AE0406-289 4 5
AE0406-294 3 4
AE0406-298 4
Minneiska 4 5
NJ 303955 3
PRI 612-1 15 3
Arlet 3 5
Co-op 39 4
Pinova 3
Scired 3
Scifresh 3
0409-0025 3 5
0409-0026 3 4
0409-0027 3 5
0409-0031 3 4
0409-0033 3 4
0409-0047 3 4
G-14-050 3
G-14-052 3 8
G-14-054 3 8
G-14-055 3 8
G-14-056 3 8
G-14-057 3
G-14-059 3 8
G-14-060 3
G-14-061 3 8
G-14-062 3 8
G-14-064 3 8
G-14-065 3 8
G-14-069 3 8
G-14-067 3 8
G-14-068 3
G-14-071 3 8
G-14-073 3
G-14-074 3 8
G-14-075 3
G-14-076 3
G-14-077 3
G-14-078 3
G-14-080 3
G-09-232 3
G-09-233 3
G-09-234 3
G-09-235 3
G-09-236 3
G-09-237 3
G-09-238 3
G-09-239 3
G-09-240 3
G-09-241 3
G-09-242 3
G-09-243 3
G-09-245 3
G-09-246 3
G-09-258 3
G-09-259 3
G-09-260 3
G-09-261 3
G-09-262 3
G-09-263 3
G-09-264 3
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 3
0408-0021 3 4
Wijcik McIntosh 22 30
Beauty of Bath 9
Priam 15 3
Northern Spy 3 5
Co-op 15 17 3
MN 1702 4 5
WA 2 3
WA 5 17 3
Pitmaston Pineapple 3 5
0411-0011 4 5
0411-0017 15 5
0411-0023 15 5
AE0250-086 3 5
AE0250-087 3
AE0250-089 3 5
AE0250-090 3 5
AE0250-092 3 5
AE0250-093 3
AE0250-094 3
AE0250-095 3 5
Sonya 3
Co-op 38 3
AE0250-096 3 5
AE0250-327 3 5
Co-op 30 15 4
Jonagrimes 3 5
AE0211-036 3 5
G-07-039 22 3
PRI 14-152 3 4
G-07-041 3 4
BC-8S-27-43 3
AE0250-091 4
AE0250-097 3 4
AE0250-325 4
AE0250-326 4
AE0250-329 3 5
AE0250-333 3 4
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 4
AE0250-338 3 4
AE0250-341 4
AE0211-038 3 5
AE0211-043 3 4
AE0211-045 3 5
AE0211-051 3 4
G-07-010 3 4
G-07-014 3
G-07-015 3
G-07-019 3 4
G-07-020 3 5
G-07-024 3 4
G-07-032 4 5
G-07-033 4 5
G-07-034 3 4
G-07-035 3 4
G-07-044 4 5
AE0211-053 3 4
AE0211-054 3 4
AE0250-088 4
AE0250-324 4 5
AE0250-328 4
AE0250-331 4 5
AE0250-332 4
AE0250-337 4
AE0250-339 4 5
Minnewashta 4
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3
Lu1-11-013 3 8
Lu1-11-016 3 8
Lu1-11-017 3 8
Lu1-11-018 3
NJ 90 3
Lord Lambourne 4
Antonovka GH 4
Grimes Golden 3
Kidds Orange Red 3 4
Malus baccata Hansen #2 22 4
Malus baccata Jackii 16
Summerred 3
William's Pride 22 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-18aApple-RosBREED-3.9K-2019120.6620.66
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637
RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1AAAB--BAB----BBBAB--BBBBA-BAAAA-BBA-
RosBREEDSNP_SNP_CT_17245435_Lg1_RosCOS3372_MAF10_1674115_exon1BBBA--ABAABBABBBBAB-BAAAB--AABBBABA-
RosBREEDSNP_SNP_CT_17248573_Lg1_RosCOS3372_MAF40_MDP0000577125_exon3-BBBBBAB-BBBBBBBBBBBBB-BB-BBB--BBBB-
RosBREEDSNP_SNP_GA_17238705_Lg1_RosCOS3372_MAF10_180981_exon1BBBA--BBBAB--BBB--B-BAABA-AAABBBAAB-
RosBREEDSNP_SNP_TC_17274400_Lg1_RosCOS3372_MAF40_MDP0000637622_exon1-ABBBAB--BAABnull-AAB--B--BAABBABABABBB
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:21502954..21538084. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation