Mdo-HB-01-17

Haplotype Block Overview
Name Mdo-HB-01-17
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3
Rome Beauty Law 3 4
Jonafree 3 6
Redfree 3 6
Spartan 3
Wagener 4 7
Worcester Pearmain 3
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3 7
Empire 3 6
Gala 3
Honeycrisp 4
Elstar 3
Marshall McIntosh 3 6
Cripps Pink 3 7
Granny Smith 3 4
Jonathan 3
Ralls Janet 2 7
Delicious 3
Discovery 3
Prima 3 6
821 6
Fiesta 3
Ingrid Marie 3
Idared 3 4
Esopus Spitzenburg 3
Braeburn 3
Sansa 3
Lodi 4 9
James Grieve 3 6
Cripps Red 4 7
Burgundy 3
Akane 3
Ambrosia 3
Aurora Golden Gala 3
Beacon 3 4
Ben Davis 3 7
Cameo 3 4
Chinook 3
Clivia 3
Co-op 17 3 7
Co-op 18 3 6
Dayton 3 6
Delblush 3 4
Delorgue 3
Dolgo 3 7
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 3 4
Early Cortland 3 4
Empress 3
F2 26829-2-2 6 7
Fantazja 3 4
Fireside 3
Fortune 3 4
Frostbite 4 6
Ginger Gold 3 4
GMAL 4327 4 6
GMAL 4328 3 4
GMAL 4329 3
GMAL 4332 3 4
Goodland 4 6
Haralson 3
Honeygold 3 4
Hudson 3 7
Jersey Black 12 3
Jonamac 3
Keepsake 3 4
Kerr 3 7
Lady Williams 4 7
Liberty 3 6
Linda 3 4
Longfield 3
Macoun 3
Malinda 11 3
Mantet 3
Melba 3
Melrose 3
MN 1628 4 7
MN 1691 3 6
MN 1706 6 9
MN 1708 3 4
MN 1760 3 4
MN 1764 3
MN 1789 3 4
MN 1802 3 6
MN 1836 3 4
MN 1837 3 4
MN 1839 3 4
MN 1888 3 4
MN 1899 3
MN 1940 3 6
MN 2016 3 4
AA-44 3 4
Monroe 3
Montgomery 3 9
Nicola 3
NJ 31 3
NJ 53 3
Oriole 3
PRI 14-126 3 6
PRI 14-510 6
PRI 16-144 6
PRI 1661-2 3 6
PRI 54-12 3 6
PRI 855-102 6
Primula 3 6
Raritan 3
Regent 3
Rubin 3
Russian Seedling 6
Sawa 4 6
Sciros 3
Sharon 3 4
Silken 3 4
Wildung 3 4
Splendour 3
State Fair 3
NJ 55 3
Co-op 29 3 6
Sunrise 3 4
Sweet Sixteen 3 6
Topaz 3
Vanda 3
Vista Bella 3
Wealthy 3
Winesap 3
Winter Banana 3 7
Yellow Newtown 11 6
Yellow Transparent 3 4
0407-0001 3 4
0407-0005 3 4
0407-0006 3 4
0407-0007 3 4
0407-0008 3 4
0408-0003 3
0408-0004 3 6
0408-0005 3 6
0408-0007 3 6
0408-0008 3 6
0408-0010 3 6
0408-0011 3
0408-0014 3 6
0408-0015 3 6
0409-0022 3 4
0409-0024 3 4
0409-0028 3 4
0409-0030 3 4
0409-0032 3 4
0409-0035 3 4
0409-0036 3 4
0409-0038 3 4
0409-0039 3 4
0409-0040 3 4
0409-0043 3 4
0409-0045 3 4
0410-0002 3 4
0410-0003 3
0410-0005 3 4
0410-0006 3
0410-0010 3 4
0410-0011 3 4
0410-0012 3
0410-0013 3
0410-0015 3 4
0410-0017 3
0410-0018 3
0414-0010 4
0414-0015 4
0414-0017 4
0414-0018 3 4
0414-0019 4
0414-0020 3 4
0414-0021 4
0415-0001 3 4
0415-0004 4 6
0415-0005 4 6
0415-0011 3 4
0415-0012 3 4
0415-0013 3 4
0415-0014 3 4
0415-0016 4 6
0415-0017 4 6
0415-0019 3 4
0415-0020 3 4
0415-0025 3 4
AE_HCxJonf-145 4 6
AE_HCXJonf-148 3 4
AE_HCxJonf-157 3 4
AE_HCXJonf-162 3 4
AE_HCXJonf-168 4 6
AE_HCxJonf-175 4 6
AE_HCxJonf-183 4 6
AE_HCxJonf-185 3 4
AE0118-237 3 4
AE0118-238 3 4
AE0118-239 4
AE0118-240 3 4
AE0118-243 3 4
AE0118-244 3 4
AE0118-245 3 4
AE0118-246 3 4
AE0118-249 3 4
AE0206-159 3 6
AE0206-160 3 6
AE0206-161 3 6
AE0206-162 3
AE0206-163 3 6
AE0206-164 3
AE0206-165 3
AE0206-167 3
AE0206-168 3 6
AE0206-169 3
AE0206-170 3
AE0210-146 3
AE0210-147 3
AE0210-149 3 4
AE0210-150 3
AE0210-151 3 4
AE0210-152 3 4
AE0210-153 3
AE0210-154 3 4
AE0210-157 3 4
AE0210-158 3
AE0210-159 3 4
AE0210-162 3
AE0210-163 3 4
AE0210-164 3 4
AE0210-165 3 4
AE0210-166 3
AE0210-168 3
AE0210-169 3
AE0210-170 3
AE0210-171 3 4
AE0210-172 3 4
AE0210-173 3
AE0210-174 3 4
AE0213-175 3 4
AE0213-176 3
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 4
AE0213-180 3 4
AE0213-181 3 4
AE0213-182 4
AE0213-183 4
AE0213-186 3
AE0213-187 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3
AE0213-196 4
AE0213-197 4
AE0213-198 3
AE0213-199 4
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 4
AE0213-205 3
AE0213-206 3 4
AE0251-323 3
AE0251-325 3 6
AE0251-327 3 6
AE0251-329 3
AE0251-330 3 6
AE0251-331 3
AE0251-342 3 6
AE0251-343 3 6
AE0406-239 4
AE0406-254 3 4
AE0406-258 4
AE0406-259 4
AE0406-263 3 4
AE0406-264 4
AE0406-266 3 4
AE0406-271 4
AE0406-274 4
AE0406-278 4
AE0406-281 3 4
AE0406-286 3 4
AE0406-288 4
AE0406-289 3 4
AE0406-294 4
AE0406-298 3 4
Minneiska 3 4
NJ 303955 3
PRI 612-1 3 6
Arlet 4
Co-op 39 3 7
Pinova 3 4
Scired 3
Scifresh 3
0409-0025 3 4
0409-0026 3 4
0409-0027 3 4
0409-0031 3 4
0409-0033 3 4
0409-0047 3 4
G-14-050 3
G-14-052 3 7
G-14-054 4 7
G-14-055 4 7
G-14-056 4 7
G-14-057 3 4
G-14-059 4 7
G-14-060 3 4
G-14-061 3 7
G-14-062 3 7
G-14-064 4 7
G-14-065 4 7
G-14-069 4 7
G-14-067 3 7
G-14-068 3 4
G-14-071 4 7
G-14-073 3 4
G-14-074 3 7
G-14-075 3
G-14-076 3
G-14-077 3
G-14-078 3 4
G-14-080 4 7
G-09-232 3 4
G-09-233 3
G-09-234 3
G-09-235 3
G-09-236 3
G-09-237 3 4
G-09-238 3
G-09-239 3
G-09-240 3
G-09-241 3
G-09-242 3
G-09-243 3 4
G-09-245 3 4
G-09-246 3 4
G-09-258 3
G-09-259 3
G-09-260 3
G-09-261 3
G-09-262 3
G-09-263 3
G-09-264 3 4
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 3 4
0408-0021 3
Wijcik McIntosh 3 6
Beauty of Bath 3
Priam 3 6
Northern Spy 3 7
Co-op 15 3 6
MN 1702 3 4
WA 2 3
WA 5 3 6
Pitmaston Pineapple 3 4
0411-0011 3 4
0411-0017 4 6
0411-0023 4 6
AE0250-086 3 6
AE0250-087 3
AE0250-089 3 6
AE0250-090 3 6
AE0250-092 3 6
AE0250-093 3
AE0250-094 3
AE0250-095 3 6
Sonya 3
Co-op 38 3 4
AE0250-096 3 6
AE0250-327 3 6
Co-op 30 3 6
Jonagrimes 3 4
AE0211-036 3 4
G-07-039 3
G-07-041 3
BC-8S-27-43 3
AE0250-091 4 6
AE0250-097 4
AE0250-325 4 6
AE0250-326 4 6
AE0250-329 4
AE0250-333 4
AE0250-334 4 6
AE0250-335 4 6
AE0250-336 4 6
AE0250-338 4
AE0250-341 4 6
AE0211-038 4
AE0211-043 3 4
AE0211-045 3 4
AE0211-051 3 4
G-07-010 3
G-07-014 3
G-07-015 3
G-07-019 3
G-07-020 3 4
G-07-024 3
G-07-032 3 4
G-07-033 3 4
G-07-034 3
G-07-035 3
G-07-044 3 4
AE0211-053 3
AE0211-054 3 6
AE0250-088 3 4
AE0250-324 3 4
AE0250-328 4 6
AE0250-331 4 6
AE0250-332 4 6
AE0250-337 3 4
AE0250-339 4 6
Minnewashta 3 6
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3
Lu1-11-013 3 7
Lu1-11-016 3 7
Lu1-11-017 3 7
Lu1-11-018 3
NJ 90 3
Lord Lambourne 3
Antonovka GH 6 7
Grimes Golden 3
Kidds Orange Red 3
Malus baccata Hansen #2 6
Malus baccata Jackii 6
Summerred 2 4
William's Pride 4 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-17Apple-RosBREED-3.9K-2019117.6318.53
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718
GDsnp02538BBA-AAABABAABAB--
RosBREEDSNP_SNP_AG_16519052_Lg1_00107_MAF10_1644262_exon1-AAAAB-BAA-BA--AA
RosBREEDSNP_SNP_GA_16501559_Lg1_00107_MAF30_1618955_exon2BBA-BBBB-AA----AB
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:20844626..21043490. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation