Mdo-HB-01-1

Haplotype Block Overview
Name Mdo-HB-01-1
Species Malus x domestica
Stock Haplotype [view all 426]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 8
Rome Beauty Law 4 6
Jonafree 4 6
Redfree 5 6
Spartan 4 5
Wagener 6 8
Worcester Pearmain 6
Tsugaru 4 6
Golden Delicious 4
Fuji 4 8
Empire 5 6
Gala 4
Honeycrisp 5 6
Elstar 4 8
Marshall McIntosh 5 6
Cripps Pink 4 5
Granny Smith 6
Jonathan 5 6
Ralls Janet 8
Delicious 4 5
Discovery 6
Prima 6 8
821 4
Fiesta 5 8
Ingrid Marie 6 8
Idared 5 6
Esopus Spitzenburg 5 8
Braeburn 5
Sansa 4 5
Lodi 4 6
James Grieve 26 8
Cripps Red 4 5
Burgundy 6
Akane 5 6
Ambrosia 4 5
Aurora Golden Gala 4 5
Beacon 4 5
Ben Davis 4 6
Cameo 4 5
Chinook 4 5
Clivia 6 8
Co-op 17 6
Co-op 18 4 6
Dayton 5 6
Delblush 4 6
Delorgue 4 5
Dolgo 3 5
Geheimrat Dr. Oldenburg 6
Duchess of Oldenburg 4 5
Early Cortland 4 5 6
Empress 5 8
F2 26829-2-2 6
Fantazja 5 6
Fireside 6
Fortune 4 8
Frostbite 4 6
Ginger Gold 4 6
GMAL 4327 6
GMAL 4328 4 6
GMAL 4329 6
GMAL 4332 4 6
Goodland 4 6
Haralson 4
Honeygold 4
Hudson 4 5
Jersey Black 2 8
Jonamac 5
Keepsake 5 6
Kerr 4 5
Lady Williams 5 6
Liberty 6 8
Linda 6
Longfield 4 6
Macoun 6 8
Malinda 4
Melba 4 5
MN 1627 4 5
MN 1628 4
MN 1691 6
MN 1706 4
MN 1708 5
MN 1760 4
MN 1764 4 5
MN 1789 4 6
MN 1802 5 6
MN 1836 4 6
MN 1837 5 6
MN 1839 4
MN 1888 5 6
MN 1899 4 6
MN 1940 5 6
MN 2016 4 6
AA-44 6 8
Monroe 4 6
Montgomery 4 8
Nicola 4 5
NJ 31 4
NJ 53 4 8
Oriole 4
PRI 14-126 4 6
PRI 14-510 4 6
PRI 16-144 4 6
PRI 1661-2 6
PRI 54-12 6
PRI 855-102 6
Primula 4 6
Raritan 4 5
Regent 4 5
Russian Seedling 6
Sawa 5 6
Sciros 4
Sharon 5
Silken 4
Wildung 5 6
Splendour 4 5
State Fair 4
NJ 55 4 8
Co-op 29 4 5
Sunrise 4 5
Sweet Sixteen 5 6
Topaz 6 8
Vista Bella 4 8
Wealthy 4 6
Winesap 4 6
Winter Banana 16 5
Yellow Newtown 6
Yellow Transparent 4 6
0407-0001 5 6
0407-0005 5 6
0407-0006 5 6
0407-0007 4
0407-0008 5 6
0408-0003 4 5
0408-0004 4 6
0408-0005 5
0408-0007 4 6
0408-0008 4 6
0408-0010 4 6
0408-0011 5
0408-0014 5 6
0408-0015 5 6
0409-0022 4 5
0409-0024 5 6
0409-0028 5 6
0409-0030 5
0409-0032 5 6
0409-0035 5 6
0409-0036 5 6
0409-0038 5 6
0409-0039 5 6
0409-0040 5
0409-0043 4 6
0409-0045 5 6
0410-0002 4 6
0410-0003 5 6
0410-0005 5 6
0410-0006 4 6
0410-0010 5 6
0410-0011 5 6
0410-0012 5 6
0410-0013 4 6
0410-0015 5 6
0410-0017 5 6
0410-0018 4 6
0414-0010 6
0414-0015 4 6
0414-0017 4 5
0414-0018 5 6
0414-0019 5 6
0414-0020 5 6
0414-0021 5 6
0415-0001 5 6
0415-0004 6
0415-0005 5 6
0415-0011 5
0415-0012 5 6
0415-0013 5 6
0415-0014 5 6
0415-0016 6
0415-0017 5 6
0415-0019 5 6
0415-0020 5
0415-0025 5 6
AE_HCxJonf-145 6
AE_HCXJonf-148 5 6
AE_HCxJonf-157 4 6
AE_HCXJonf-162 4 6
AE_HCXJonf-168 5 6
AE_HCxJonf-175 6
AE_HCxJonf-183 4 6
AE_HCxJonf-185 4 5
AE0118-237 4 6
AE0118-238 5 6
AE0118-239 4 6
AE0118-240 4 6
AE0118-243 5 6
AE0118-244 5 6
AE0118-245 4 5
AE0118-246 4 5
AE0118-249 4 5
AE0206-159 5 6
AE0206-160 5 6
AE0206-161 5 6
AE0206-162 4 5
AE0206-163 5 6
AE0206-164 4
AE0206-165 4 5
AE0206-167 4 6
AE0206-168 4 6
AE0206-169 4
AE0206-170 4
AE0210-146 4 6
AE0210-147 4 6
AE0210-149 5 6
AE0210-150 4 6
AE0210-151 5 6
AE0210-152 4 5
AE0210-153 4 6
AE0210-154 5 6
AE0210-157 5 6
AE0210-158 4 6
AE0210-159 4 6
AE0210-162 4 6
AE0210-163 5 6
AE0210-164 5 6
AE0210-165 5 6
AE0210-166 4 6
AE0210-168 4 6
AE0210-169 4 6
AE0210-170 5 6
AE0210-171 5 6
AE0210-172 5 6
AE0210-173 5 6
AE0210-174 5 6
AE0213-176 4 6
AE0213-177 6
AE0213-178 4
AE0213-179 4 6
AE0213-180 6
AE0213-181 6
AE0213-182 4 6
AE0213-183 4 6
AE0213-186 4 6
AE0213-187 4 6
AE0213-190 4
AE0213-193 4 6
AE0213-194 4 6
AE0213-195 6
AE0213-196 6
AE0213-197 6
AE0213-198 4
AE0213-199 4 6
AE0213-200 6
AE0213-201 4
AE0213-202 4 6
AE0213-205 4 6
AE0213-206 4
AE0251-323 4 5
AE0251-327 5 6
AE0251-329 4 6
AE0251-330 5 6
AE0251-331 5 6
AE0251-342 5
AE0251-343 4 5
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 6
AE0406-264 4 5
AE0406-266 4 5
AE0406-271 4 6
AE0406-274 4 6
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 6
AE0406-294 4 5
AE0406-298 4 5
Minneiska 4 6
NJ 303955 8
PRI 612-1 4 6
Arlet 4 6
Co-op 39 17 8
Pinova 4 8
Scired 4
Scifresh 4 5
0409-0025 5 6
0409-0026 5
0409-0027 5 6
0409-0031 4 5
0409-0033 4 6
0409-0047 4 5
G-14-050 4 6
G-14-052 8
G-14-054 8
G-14-055 8
G-14-056 4 8
G-14-057 4 6
G-14-059 4 8
G-14-060 4 6
G-14-061 8
G-14-062 8
G-14-064 4 6
G-14-065 4 8
G-14-069 4 8
G-14-067 8
G-14-068 4 6
G-14-071 8
G-14-073 4 6
G-14-074 8
G-14-075 6 8
G-14-076 6 8
G-14-077 6 8
G-14-078 4 6
G-14-080 4 8
G-09-232 5 6
G-09-233 5 6
G-09-234 4 5
G-09-235 4 5
G-09-236 5 6
G-09-237 5 6
G-09-238 4 5
G-09-239 4 5
G-09-240 4 5
G-09-241 4 5
G-09-242 4 5
G-09-243 5 6
G-09-245 4 5
G-09-246 4 5
G-09-258 4 5
G-09-259 4 5
G-09-260 4 5
G-09-261 4 5
G-09-262 4 5
G-09-263 4 5
G-09-264 5 6
G-09-265 4 5
G-09-266 4 5
G-09-267 4 5
G-09-268 5 6
0408-0021 4 5
Wijcik McIntosh 23 24
Beauty of Bath 6 8
Priam 6
Northern Spy 4 5
Co-op 15 5 6
MN 1702 4 6
WA 2 4 5
WA 5 5 6
Pitmaston Pineapple 6
0411-0011 5 6
0411-0017 4 6
0411-0023 6
AE0250-086 5 6
AE0250-089 5
AE0250-090 5 6
AE0250-092 4 6
AE0250-093 4 5
AE0250-094 4 5
AE0250-095 5 6
Sonya 4 5
Co-op 38 4 6
AE0250-096 5 6
AE0250-327 6
Co-op 30 5 6
Jonagrimes 3 5
AE0211-036 4
G-07-039 4
PRI 14-152 4 6
PRI 47-176 5 6
G-07-041 4 5
BC-8S-27-43 4 5
AE0250-091 5 6
AE0250-097 5 6
AE0250-325 5 6
AE0250-326 5 6
AE0250-329 5 6
AE0250-333 5 6
AE0250-334 5 6
AE0250-335 6
AE0250-336 6
AE0250-338 5 6
AE0250-341 5 6
AE0211-038 4 6
AE0211-043 4 6
AE0211-045 4
AE0211-051 6
G-07-010 5 6
G-07-014 4 6
G-07-015 5 6
G-07-019 5 6
G-07-020 4 6
G-07-024 5 6
G-07-032 5 6
G-07-033 5 6
G-07-034 5 6
G-07-035 5 6
G-07-044 5 6
AE0211-053 4
AE0211-054 4 6
AE0250-088 4 6
AE0250-324 4 5
AE0250-328 6
AE0250-331 6
AE0250-332 5 6
AE0250-337 4 6
AE0250-339 4 6
Minnewashta 4 6
Autumn Crisp 4 6
G-14-066 6 8
Lu1-11-010 4 6
Lu1-11-013 6 8
Lu1-11-016 4 6
Lu1-11-017 6 8
Lu1-11-018 4 8
NJ 90 5
Lord Lambourne 6 8
Antonovka GH 6
Grimes Golden 3 4
Kidds Orange Red 4 8
Malus baccata Hansen #2 4
Malus baccata Jackii 4
Summerred 4
William's Pride 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-01-1Apple-RosBREED-3.9K-2019100
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627
RosBREEDSNP_SNP_AC_121548_Lg1_00288_MAF30_MDP0000151845_exon1ABAABAAABAA--BAB--BABBA---
RosBREEDSNP_SNP_AC_180528_Lg1_00288_MAF40_302606_exon1ABAABAA--A-A-BABBABBAABA--
RosBREEDSNP_SNP_CT_154698_Lg1_00288_MAF50_285078_exon1--BBA-ABABBB-AABAAAAAABBAB
RosBREEDSNP_SNP_TC_3094248_Lg1_02894_MAF50_285661_exon1AAABABBAA-BAA-AAABBBABAB--
Alignments
Feature NameTypeLocationAnalysis
Chr01 chromosome Chr01:7584179..7625019. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation