Mdo-HB-05-37

Haplotype Block Overview
Name Mdo-HB-05-37
Species Malus x domestica
Stock Haplotype [view all 419]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 9
Rome Beauty Law 12 3
Jonafree 3
Redfree 103 46
Spartan 12
Wagener 36 4
Worcester Pearmain 79 9
Tsugaru 25 3
Golden Delicious 3 4
Fuji 13 3
Empire 12
Gala 3 4
Honeycrisp 3
Elstar 13 3
Marshall McIntosh 12
Cripps Pink 13 4
Granny Smith 12 4
Jonathan 25 3
Ralls Janet 14 3
Delicious 12 13
Discovery 15 79
Prima 13 99
821 13 18
Fiesta 3 36
Ingrid Marie 13 9
Idared 25 36
Esopus Spitzenburg 25 5
Braeburn 12 13
Sansa 3
Lodi 13 3
James Grieve 13 9
Cripps Red 13 4
Burgundy 3
Akane 3 79
Ambrosia 13 4
Aurora Golden Gala 3 4
Beacon 13
Ben Davis 12 13 4
Cameo 13 3
Chinook 3 4
Clivia 13 9
Co-op 17 25 4
Co-op 18 3
Dayton 3 4
Delblush 12 4
Delcorf 3 78
Delorgue 3 79
Dolgo 36
Geheimrat Dr. Oldenburg 13 79
Duchess of Oldenburg 5 9
Early Cortland 12 13
Empress 12 58
F2 26829-2-2 13 4
Fantazja 12 3
Fireside 25 46
Fortune 3 4
Frostbite 3 9
Ginger Gold 13 3
GMAL 4327 13 9
GMAL 4328 65 9
GMAL 4329 13 3
GMAL 4332 3 65
Haralson 12 9
Honeygold 4 9
Hudson 10 12
Jersey Black 3
Jonamac 12 25
Keepsake 10 3
Kerr 12 36
Lady Williams 13 4
Liberty 12 13
Linda 25 3
Longfield 110
Macoun 12 3
Mantet 13
Melba 12 55
Melrose 12 25
MN 1628 10 3
MN 1691 25 9
MN 1706 84 85
MN 1708 10 3
MN 1760 13 3
MN 1764 3 98
MN 1802 12 58
MN 1836 13 3
MN 1837 25 3
MN 1839 13 9
MN 1888 3 9
MN 1899 25 9
MN 1940 12 58
MN 2016 25 36
AA-44 12 9
Monroe 12 3
Montgomery 13 3
Nicola 4
NJ 31 3
NJ 53 12 58
PRI 14-126 13 3
PRI 14-510 13 3
PRI 1661-2 12
PRI 855-102 3
Primula 12 13
Raritan 101 102
Regent 12 9
Russian Seedling 104 85
Sawa 12
Sciros 4
Sharon 12 58
Silken 3 4
Wildung 12 25
Splendour 12 4
State Fair 12 13
NJ 55 12 4
Co-op 29 12 4
Sunrise 12 3
Sweet Sixteen 10 3
Topaz 3 9
Vista Bella 58 9
Wealthy 25 9
Winesap 12
Winter Banana 3 4
Yellow Newtown 106 107
Yellow Transparent 13 65
0407-0001 3 36
0407-0005 3 4
0407-0006 36 4
0407-0007 3 36
0407-0008 3 4
0408-0003 12 3
0408-0004 12 3
0408-0005 12 4
0408-0007 12 4
0408-0008 12 4
0408-0010 12 3
0408-0011 12 4
0408-0014 12 3
0408-0015 12 3
0409-0022 3
0409-0024 3 4
0409-0028 3
0409-0030 3 4
0409-0032 3
0409-0035 3 4
0409-0036 3
0409-0038 3 4
0409-0039 3 4
0409-0040 3
0409-0043 3
0409-0045 3 4
0410-0002 3 4
0410-0003 3 4
0410-0005 12 3
0410-0006 3 4
0410-0010 4
0410-0011 3 4
0410-0012 4
0410-0013 12 4
0410-0015 12 3
0410-0017 3 4
0410-0018 3 4
0414-0010 3 36
0414-0015 3
0414-0017 3
0414-0018 12 3
0414-0019 3 36
0414-0020 12 3
0414-0021 3 36
0415-0001 12 3
0415-0004 12 3
0415-0005 12 3
0415-0011 12 3
0415-0012 12 3
0415-0013 12 3
0415-0014 3
0415-0016 12 3
0415-0017 12 3
0415-0019 12 3
0415-0020 12 3
0415-0025 12 3
AE_HCxJonf-145 3
AE_HCXJonf-148 3
AE_HCxJonf-157 3
AE_HCXJonf-162 3
AE_HCXJonf-168 12 3
AE_HCxJonf-175 3
AE_HCxJonf-183 3
AE_HCxJonf-185 3
AE0118-237 12 3
AE0118-238 3 9
AE0118-239 13 3
AE0118-240 3 9
AE0118-243 3 9
AE0118-244 12 3
AE0118-245 3 9
AE0118-246 3 9
AE0118-249 12 3
AE0206-159 12 3
AE0206-160 12 3
AE0206-161 12 4
AE0206-162 12 4
AE0206-163 12 4
AE0206-164 12 3
AE0206-165 25 3
AE0206-167 25 4
AE0206-168 12 3
AE0206-169 25 4
AE0206-170 25 3
AE0210-146 12 3
AE0210-147 13 3
AE0210-149 12 13
AE0210-150 13 3
AE0210-151 12 13
AE0210-152 25 3
AE0210-153 12 13
AE0210-154 12 13
AE0210-157 12 3
AE0210-158 12 13
AE0210-159 13 3
AE0210-162 3
AE0210-163 3
AE0210-164 12 13
AE0210-165 12 3
AE0210-166 12 3
AE0210-168 12 3
AE0210-169 12 3
AE0210-170 13 3
AE0210-172 13 3
AE0210-173 12 13
AE0210-174 3
AE0213-175 13 65
AE0213-176 3
AE0213-177 13 65
AE0213-178 3 65
AE0213-179 13 3
AE0213-180 3
AE0213-181 13 65
AE0213-182 3 65
AE0213-183 3
AE0213-186 3 65
AE0213-187 13 65
AE0213-190 3 65
AE0213-193 3 65
AE0213-194 3 65
AE0213-195 13 65
AE0213-196 13 3
AE0213-197 3 65
AE0213-198 13 3
AE0213-199 13 3
AE0213-200 13 3
AE0213-201 3
AE0213-202 3
AE0213-205 13 65
AE0213-206 13 3
AE0251-323 10 4
AE0251-325 10 4
AE0251-327 3
AE0251-329 10 3
AE0251-330 3
AE0251-331 3 4
AE0251-342 10 4
AE0251-343 10 3
AE0406-239 3 4
AE0406-254 3 4
AE0406-258 3
AE0406-259 3
AE0406-263 3 4
AE0406-264 3
AE0406-266 3
AE0406-271 3 9
AE0406-274 3
AE0406-278 3
AE0406-281 3
AE0406-286 3
AE0406-288 3
AE0406-289 3
AE0406-294 3
AE0406-298 3 4
Minneiska 25 3
NJ 303955 12
PRI 612-1 12 3
Arlet 3 36
Co-op 39 94 95
Pinova 13 4
Scired 3 4
Scifresh 12 4
0409-0025 3 4
0409-0026 3
0409-0027 3 4
0409-0031 3 4
0409-0033 3
0409-0047 3
G-14-050 13 3
G-14-052 13 3
G-14-054 13 3
G-14-055 13 3
G-14-056 3 4
G-14-057 3 4
G-14-059 3 4
G-14-060 3 4
G-14-061 13 3
G-14-062 13 3
G-14-064 13 3
G-14-065 13 3
G-14-069 3 4
G-14-067 13 3
G-14-068 13 3
G-14-071 3 4
G-14-073 13 3
G-14-074 13 3
G-14-075 13 3
G-14-076 13 3
G-14-077 3 4
G-14-078 3 4
G-14-080 13 3
G-09-232 12 3
G-09-233 12 3
G-09-234 12 3
G-09-235 12 3
G-09-236 13
G-09-237 13
G-09-238 13
G-09-239 12 13
G-09-240 13 3
G-09-241 13
G-09-242 12 13
G-09-243 12 13
G-09-245 12 13
G-09-246 13 3
G-09-258 12 13
G-09-259 13
G-09-260 12 3
G-09-261 13
G-09-262 13 3
G-09-263 12 13
G-09-264 13
G-09-265 13
G-09-266 13 3
G-09-267 12 3
G-09-268 12 13
0408-0021 12 3
Wijcik McIntosh 12
Beauty of Bath 15
Priam 13 25
Northern Spy 10 4
Co-op 15 3 9
MN 1702 25 3
WA 2 12 3
WA 5 4 9
Pitmaston Pineapple 13 25
0411-0011 12 3
0411-0017 12 3
0411-0023 12 3
AE0250-086 3
AE0250-087 10 3
AE0250-089 3 4
AE0250-090 10 4
AE0250-092 3 4
AE0250-093 10 3
AE0250-095 10 3
Sonya 12 4
Co-op 38 25 4
AE0250-096 4 9
Co-op 30 12
AE0211-036 13 63
G-07-039 3
PRI 14-152 4
G-07-041 3
BC-8S-27-43 3 4
AE0250-091 13 3
AE0250-097 13 3
AE0250-325 13 3
AE0250-326 13 3
AE0250-329 13 3
AE0250-333 3 9
AE0250-334 3 9
AE0250-335 3 9
AE0250-336 3 9
AE0250-338 13 3
AE0250-341 13 3
AE0211-038 3 9
AE0211-043 3 65
AE0211-051 3 9
G-07-010 3 4
G-07-014 12 3
G-07-015 12 3
G-07-019 12 3
G-07-020 12 3
G-07-024 3 4
G-07-032 3 4
G-07-033 3 4
G-07-034 3 4
G-07-035 12 3
G-07-044 12 3
AE0211-053 12 13
AE0211-054 25 3
AE0250-088 25 3
AE0250-324 25 3
AE0250-328 12 3
AE0250-331 12 3
AE0250-332 12 3
AE0250-337 25 3
AE0250-339 25 3
Minnewashta 12 25
Autumn Crisp 3
G-14-066 13 3
Lu1-11-010 13 4
Lu1-11-013 12 13
Lu1-11-016 13 4
Lu1-11-017 12 3
Lu1-11-018 12 13
NJ 90 12
Lord Lambourne 13 9
Antonovka GH 13 3
Grimes Golden 3
Kidds Orange Red 13 3
Malus baccata Hansen #2 13 3
Malus baccata Jackii 13
Summerred 4 42
William's Pride 36 92
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-05-37Apple-RosBREED-3.9K-2019529.8832.36
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115
GDsnp01304BBABBBBBBBBBABBBBBA--BABBBBBABABABBBBBBB-BABBBB---BBBBBBBB--BBBBBBBBBBBBBBB--BBBBBBBBBABBBBBABBBBBBBBBBBBBAABABBBB
RosBREEDSNP_SNP_AG_11286204_Lg8_RosCOS936_MAF30_MDP0000165239_exon1-AAAB--BA-BA-A-BA-AAAABB--------ABB-----BBABAB-BA-BAABA-AB--AB-BAB--AAABABA--AB---BAAAAA--AAABAAABAABBBAABBAAA-ABA
RosBREEDSNP_SNP_AG_11298510_Lg8_RosCOS936_MAF20_950609_exon1-AAAAAAAABBA-ABBA-AAAABBABABAAAAABABAAAAAAABAB-BA-AAAABBAAABABBB----AAABABA--A----ABBAAAABBABAAAAAAAABAAABBA-AA--A
RosBREEDSNP_SNP_CT_15277675_Lg8_00354_MAF10_1648872_exon2-BBBBBBBBBBB-BBBBBBBBBAABBBBBBBBBABABBBBBBBBBBBBBBBABBBABBBBBBBBBB--BBBBBAB--BB-ABBBABBB--BABABBBBBBBBBBABBBBBBBBB
RosBREEDSNP_SNP_GA_15274311_Lg8_00354_MAF30_148978_exon1-BBAAABABBBB-BBB---BBBAABBABBABABABABBBBAABBBBBB-BBABBBAABBBBBBBBBABAAABAAA--AA-ABBBAB--BABABAABAABBABAABABBBBBABA
RosBREEDSNP_SNP_GA_24545181_Lg5_01304_MAF30_MDP0000610390_exon1-BB----AABBB-BBBBBBBBBAAB---BABAB-BABBBBAABBBBBBB-AB-BB-ABBBBBBBBB---ABABAB--BA-ABBB--BBBABABABBAABBABBABABBB-BAB-
RosBREEDSNP_SNP_GT_11338203_Lg8_RosCOS936_MAF50_MDP0000274626_exon5-BBAAABABAAB-BAAB-BBBABABAAABA--BAAAAA--AA--AB-AB-ABBBAAABBABAAABAABBBAA--B--BA---BAABBB--BAABB-B--ABBBABAABBBBAAB
RosBREEDSNP_SNP_TC_11303456_Lg8_RosCOS936_MAF50_MDP0000280399_exon1-AAnullnullnullAnullnull-nullnull--null-null-AAnullAnullnull-nullnullnullAnullAnull-nullnullnullnull-nullAnull-Anullnullnull-null--nullnullAnullnullnullnullAAnullAAnullnull----nullnullnullnullnullnullnullAnullA-null--nullAnullnull----AAAnull-AAnullnullAnullAAAnullAnullnullnullAAnullnullA
Alignments
Feature NameTypeLocationAnalysis
Chr05 chromosome Chr05:25714928..26982903. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation