Mdo-HB-05-26

Haplotype Block Overview

Name	Mdo-HB-05-26
Species	Malus x domestica
Stock Haplotype	[view all 419]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	17 6
Rome Beauty Law	17 6
Jonafree	17 6
Redfree	16
Spartan	4
Worcester Pearmain	17 26
Golden Delicious	3 4
Fuji	4 6
Empire	3 5
Gala	4 6
Honeycrisp	3 9
Elstar	3
Marshall McIntosh	3 4
Cripps Pink	4 6
Granny Smith	3 4
Jonathan	6 9
Ralls Janet	13 6
Delicious	4 5
Discovery	17
Prima	16 17
821	17 3
Fiesta	6
Ingrid Marie	17 3
Idared	6 9
Esopus Spitzenburg	17 9
Braeburn	4 6
Sansa	6
Lodi	4 5
James Grieve	17
Cripps Red	4 6
Burgundy	4 9
Akane	26 6
Ambrosia	4
Aurora Golden Gala	4
Beacon	3 37
Ben Davis	3 4 5
Cameo	4
Chinook	5 6
Clivia	17 4
Co-op 17	3 6
Co-op 18	17 6
Dayton	17 4 6
Delblush	3 4
Delcorf	5
Delorgue	26 5
Dolgo	27 5
Geheimrat Dr. Oldenburg	26 4
Duchess of Oldenburg	5 6
Early Cortland	3 4
Empress	3 6
F2 26829-2-2	17 5
Fantazja	3 4
Fireside	6 9
Fortune	4 6
Frostbite	4 6
Ginger Gold	3 4
GMAL 4327	20 3
GMAL 4328	3 6
GMAL 4329	3 4
GMAL 4332	3 6
Goodland	16 6
Haralson	3 6
Honeygold	4 6
Hudson	5 9
Jersey Black	3 35
Jonamac	3 9
Keepsake	6 9
Kerr	3 5
Lady Williams	4 6
Liberty	4 5
Linda	4 6
Longfield	3 4
Macoun	3 4
Malinda	17 3
Mantet	34 6
Melba	4 6
Melrose	4 9
MN 1627	3 5
MN 1628	4 9
MN 1691	6
MN 1706	26 3
MN 1760	17 4
MN 1764	17 4
MN 1789	5 6
MN 1802	6
MN 1836	3 6
MN 1839	5
MN 1888	3 6
MN 1899	6
MN 1940	3 6
MN 2016	6
AA-44	6 9
Monroe	6 9
Montgomery	5
Nicola	4
NJ 31	17
NJ 53	3 6
Oriole	6
PRI 14-126	17 4
PRI 14-510	17
PRI 1661-2	4 5
PRI 54-12	5 6
PRI 855-102	6
Primula	17 4
Raritan	16
Regent	3 6
Russian Seedling	3
Sawa	3 4
Sciros	4
Sharon	3 6
Silken	3 4
Wildung	3 6
Splendour	4 5
State Fair	3 6
NJ 55	4 6
Co-op 29	4
Sunrise	3 4
Sweet Sixteen	4 9
Topaz	17 3
Vista Bella	6
Wealthy	6
Winesap	3 5
Winter Banana	3 4
Yellow Newtown	6 9
Yellow Transparent	3 4
0407-0001	4 6
0407-0005	3 4
0407-0006	3 4
0407-0007	4 6
0407-0008	3 4
0408-0003	4 5
0408-0004	4 6
0408-0005	4 6
0408-0007	4 6
0408-0008	4 6
0408-0010	4 6
0408-0011	4 6
0408-0014	4 6
0408-0015	4 6
0409-0022	4 9
0409-0024	3 4
0409-0028	3 4
0409-0030	3 4
0409-0032	4 9
0409-0035	3 4
0409-0036	3 4
0409-0038	4 9
0409-0039	3 4
0409-0040	3 4
0409-0043	4 9
0409-0045	3 4
0410-0002	4
0410-0003	4
0410-0005	3 4
0410-0006	4
0410-0010	4
0410-0011	4
0410-0012	4
0410-0013	4
0410-0015	3 4
0410-0017	4
0410-0018	3 4
0414-0010	6 9
0414-0015	3
0414-0017	3
0414-0018	3 6
0414-0019	6 9
0414-0020	3 5
0414-0021	3 9
0415-0001	5 9
0415-0004	3 6
0415-0005	5 9
0415-0011	5 9
0415-0012	6 9
0415-0013	3 6
0415-0014	6 9
0415-0016	3 5
0415-0017	5 9
0415-0019	3 6
0415-0020	6 9
0415-0025	3 5
AE_HCxJonf-145	17 9
AE_HCXJonf-148	17 3
AE_HCXJonf-162	6 9
AE_HCXJonf-168	3 9
AE_HCxJonf-175	3 6
AE_HCxJonf-183	17 3
AE_HCxJonf-185	17 9
AE0118-237	3
AE0118-238	3 6
AE0118-239	5 9
AE0118-240	6 9
AE0118-243	3 6
AE0118-244	6 9
AE0118-245	3 6
AE0118-246	3 6
AE0118-249	6 9
AE0206-159	6
AE0206-160	6
AE0206-161	3 4
AE0206-162	4 6
AE0206-163	3 4
AE0206-164	3 6
AE0206-165	6
AE0206-167	4 6
AE0206-168	3 6
AE0206-169	4 6
AE0206-170	4 6
AE0210-146	3 4
AE0210-147	3 4
AE0210-149	3 4
AE0210-150	3
AE0210-151	3
AE0210-152	3 6
AE0210-153	4
AE0210-154	3
AE0210-157	3 4
AE0210-158	3 4
AE0210-159	4
AE0210-162	3 4
AE0210-163	3 4
AE0210-164	3 4
AE0210-165	4
AE0210-166	4
AE0210-168	4
AE0210-169	4
AE0210-170	3
AE0210-171	3 4
AE0210-172	3
AE0210-173	3 4
AE0210-174	3
AE0213-175	3 4
AE0213-176	3 6
AE0213-177	3 6
AE0213-178	3
AE0213-179	3 4
AE0213-180	3 6
AE0213-181	3 6
AE0213-182	3
AE0213-183	3 6
AE0213-186	3
AE0213-187	4 6
AE0213-190	3 4
AE0213-193	3
AE0213-194	3
AE0213-195	4 6
AE0213-196	3 6
AE0213-197	3
AE0213-198	3
AE0213-199	3 6
AE0213-200	4 6
AE0213-201	3 6
AE0213-202	3 6
AE0213-205	4 6
AE0213-206	4 6
AE0251-323	4 9
AE0251-327	6 9
AE0251-329	6 9
AE0251-330	4 6
AE0251-331	4
AE0251-342	4 9
AE0251-343	4 9
AE0406-239	3 9
AE0406-254	4 9
AE0406-258	3
AE0406-259	3
AE0406-263	3 4
AE0406-264	3 9
AE0406-266	3 9
AE0406-271	6 9
AE0406-274	3 9
AE0406-278	3
AE0406-281	3
AE0406-286	3 9
AE0406-288	3 9
AE0406-289	3 9
AE0406-294	3
AE0406-298	3 4
Minneiska	6 9
NJ 303955	6
PRI 612-1	4 5
Arlet	3 6
Co-op 39	17 6
Pinova	17 4
Scired	5 6
Scifresh	4 6
0409-0025	3 4
0409-0026	3 4
0409-0027	3 4
0409-0031	4 9
0409-0033	4 9
0409-0047	4 9
G-14-050	4 6
G-14-052	17 6
G-14-054	17 9
G-14-055	17 9
G-14-056	4 6
G-14-057	4 9
G-14-059	4 9
G-14-060	17 6
G-14-061	17 6
G-14-062	17 9
G-14-064	17 9
G-14-065	17 6
G-14-069	4 9
G-14-067	17 6
G-14-068	17 9
G-14-071	17 6
G-14-073	17 6
G-14-074	17 6
G-14-075	17 6
G-14-076	4 9
G-14-077	4 6
G-14-078	4 6
G-14-080	17 9
G-09-232	3 6
G-09-233	3 6
G-09-234	3 6
G-09-235	3 6
G-09-236	4
G-09-237	4
G-09-238	4 6
G-09-239	4 6
G-09-240	3 4
G-09-241	4
G-09-242	4 6
G-09-243	4 6
G-09-245	4 6
G-09-246	3 4
G-09-258	4
G-09-259	4
G-09-260	3 6
G-09-262	3 4
G-09-263	4 6
G-09-264	4
G-09-265	4
G-09-266	3 4
G-09-267	3 6
G-09-268	4 6
0408-0021	4 6
Wijcik McIntosh	3 4
Beauty of Bath	17 43
Priam	17 9
Northern Spy	4 9
Co-op 15	4 6
MN 1702	4 6
WA 2	4 6
WA 5	4 6
Pitmaston Pineapple	3 4
0411-0011	3 5
0411-0017	3 6
0411-0023	3 6
AE0250-086	4 6
AE0250-087	6 9
AE0250-089	4
AE0250-090	4 9
AE0250-092	4 9
AE0250-093	6 9
AE0250-094	4 6
AE0250-095	6 9
Sonya	4 6
Co-op 38	4 6
AE0250-327	17 6
Co-op 30	5 6
Jonagrimes	3 5
AE0211-036	3
G-07-039	16 6
G-07-041	6
BC-8S-27-43	4 6
AE0250-091	3 9
AE0250-097	3
AE0250-325	20 3
AE0250-326	20 9
AE0250-329	3
AE0250-333	3
AE0250-334	20 3
AE0250-335	20 3
AE0250-336	20 9
AE0250-338	3 9
AE0250-341	3
AE0211-038	3 6
AE0211-043	3 4
AE0211-051	4 6
G-07-010	4 6
G-07-014	3 6
G-07-015	3 6
G-07-019	3 6
G-07-020	4 6
G-07-024	4 6
G-07-032	4 6
G-07-033	4 6
G-07-035	3 6
G-07-044	3 6
AE0211-053	4 6
AE0211-054	3 6
AE0250-088	6 9
AE0250-324	3 6
AE0250-328	3 9
AE0250-331	3 9
AE0250-332	3 9
AE0250-337	3 6
AE0250-339	6 9
Minnewashta	3 6
Autumn Crisp	3 9
G-14-066	17 9
Lu1-11-010	4
Lu1-11-013	4
Lu1-11-016	4
Lu1-11-017	4 6
Lu1-11-018	4 6
NJ 90	3 4
Lord Lambourne	17
Antonovka GH	4 9
Grimes Golden	3
Kidds Orange Red	4 6
Malus baccata Hansen #2	19 20
Malus baccata Jackii	46
Summerred	3 48
William's Pride	3 9

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-05-26	Apple-RosBREED-3.9K-2019	5	51.71	51.82

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52
GDsnp01616	B	B	A	B	null	-	-	B	B	B	-	-	null	B	null	B	-	null	B	A	null	A	-	-	A	null	-	-	-	-	-	B	-	B	A	B	A	B	B	null	B	null	null	-	null	B	null	A	A	A	null
RosBREEDSNP_SNP_AG_15491385_Lg5_01616_MAF40_1680720_exon1	A	A	A	A	B	A	A	B	A	A	B	A	-	-	B	A	-	A	B	A	B	A	A	A	B	A	-	B	-	A	B	-	-	B	B	A	A	-	B	A	A	B	-	B	A	A	B	-	-	-	-
RosBREEDSNP_SNP_GA_15533911_Lg5_01616_MAF20_162946_exon1	-	B	B	A	B	A	B	B	A	B	-	-	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	A	-	-	A	-	-	B	A	-	-	B	B	B	-	-	B	B	-	-
RosBREEDSNP_SNP_TC_15472298_Lg5_01616_MAF30_1682170_exon2	-	A	A	A	B	-	-	A	-	-	-	-	B	A	-	B	-	A	B	-	A	B	A	A	A	B	A	B	B	B	A	B	-	-	-	B	-	A	-	A	B	A	-	-	-	A	B	-	A	A	B

Alignments

Feature Name	Type	Location	Analysis
Chr05	chromosome	Chr05:34091392..34147620.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation