Mdo-HB-05-25

Haplotype Block Overview
Name Mdo-HB-05-25
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 7
Rome Beauty Law 10 7
Jonafree 10 26
Redfree 68 7
Spartan 15 5
Wagener 28 7
Worcester Pearmain 10 4
Tsugaru 25 4
Golden Delicious 4 5
Fuji 5 7
Empire 14 6
Gala 5 7
Honeycrisp 10 4
Elstar 4 5
Marshall McIntosh 14 15
Cripps Pink 5 7
Granny Smith 14 4
Jonathan 25 26
Ralls Janet 2 7
Delicious 5 6
Discovery 10
Prima 10 7
821 19
Fiesta 7
Ingrid Marie 10 5
Idared 25 7
Esopus Spitzenburg 10 25
Braeburn 5 7
Sansa 26 7
Lodi 4 6
James Grieve 10
Cripps Red 5 7
Burgundy 20 25
Akane 26 4
Ambrosia 5
Aurora Golden Gala 5
Beacon 10 6
Ben Davis 14 20 5 6
Cameo 5
Chinook 6 7
Clivia 10 5
Co-op 17 4 7
Co-op 18 10 26
Dayton 10 5 7
Delblush 14 5
Delcorf 6
Delorgue 4 6
Dolgo 22 6
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 6 7
Early Cortland 14 20 4
Empress 14 7
F2 26829-2-2 10 6
Fantazja 14 15
Fireside 10 26
Fortune 51 7
Frostbite 5 7
Ginger Gold 4
GMAL 4327 5 7
GMAL 4328 5 7
GMAL 4329 4 5
GMAL 4332 5 7
Goodland 7
Haralson 5 7
Honeygold 5 7
Hudson 10 6
Jersey Black 13 5
Jonamac 14 25
Keepsake 10 7
Kerr 5 6
Lady Williams 4 7
Liberty 15 6
Linda 15 7
Longfield 15 72
Macoun 15 5
Malinda 10 5
Mantet 37 7
Melba 15 54
Melrose 25 5
MN 1627 4 6
MN 1628 10 5
MN 1691 26 7
MN 1706 10 15
MN 1708 4 7
MN 1760 10 5
MN 1764 10 15
MN 1789 26 6
MN 1802 7
MN 1836 5 7
MN 1837 4 7
MN 1839 6
MN 1888 4 7
MN 1899 26 7
MN 1940 5 7
MN 2016 7
AA-44 25 7
Monroe 25 7
Montgomery 6
Nicola 5
NJ 31 10
NJ 53 49 7
Oriole 26 7
PRI 14-126 10 5
PRI 14-510 10
PRI 1661-2 15 6
PRI 54-12 6 7
PRI 855-102 26
Primula 10 15
Raritan 7
Regent 14 7
Russian Seedling 5
Sawa 14 15
Sciros 5
Sharon 14 7
Silken 4 5
Wildung 14 26
Splendour 5 6
State Fair 5 7
NJ 55 5 7
Co-op 29 15 5
Sunrise 15 4
Sweet Sixteen 10 5
Topaz 10 4
Vanda 10 4
Vista Bella 7
Wealthy 26 7
Winesap 14 6
Winter Banana 5 65
Yellow Newtown 68 70
Yellow Transparent 4 5
0407-0001 5 7
0407-0005 4 5
0407-0006 4 5
0407-0007 4 5
0407-0008 4 5
0408-0003 5 6
0408-0004 5 7
0408-0005 5 7
0408-0007 5 7
0408-0008 5 7
0408-0010 5 7
0408-0011 5 7
0408-0014 5 7
0408-0015 5 7
0409-0022 10 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 10 5
0409-0035 4 5
0409-0036 4 5
0409-0038 10 5
0409-0039 4 5
0409-0040 4 5
0409-0043 10 5
0409-0045 4 5
0410-0002 4 5
0410-0003 4 5
0410-0005 14 5
0410-0006 4 5
0410-0010 4 5
0410-0011 4 5
0410-0012 4 5
0410-0013 4 5
0410-0015 14 5
0410-0017 4 5
0410-0018 14 5
0414-0010 10 4
0414-0015 4
0414-0017 4
0414-0018 4 7
0414-0019 10 7
0414-0020 4 6
0414-0021 10 4
0415-0001 10 6
0415-0004 4 7
0415-0005 10 6
0415-0011 10 6
0415-0012 10 7
0415-0013 4 7
0415-0014 10 7
0415-0016 4 6
0415-0017 10 6
0415-0019 4 7
0415-0020 10 7
0415-0025 4 6
AE_HCxJonf-145 10
AE_HCXJonf-148 10 4
AE_HCxJonf-157 10 4
AE_HCXJonf-162 10 26
AE_HCXJonf-168 10 14
AE_HCxJonf-175 26 4
AE_HCxJonf-183 10 4
AE0118-237 14 4
AE0118-238 4 7
AE0118-239 10 6
AE0118-240 10 7
AE0118-243 4 7
AE0118-244 10 7
AE0118-245 4 7
AE0118-246 4 7
AE0118-249 10 7
AE0206-159 7
AE0206-160 7
AE0206-161 5
AE0206-162 5 7
AE0206-163 5
AE0206-164 5 7
AE0206-165 7
AE0206-167 5 7
AE0206-168 5 7
AE0206-169 5 7
AE0206-170 5 7
AE0210-146 15 5
AE0210-147 15 5
AE0210-149 15 5
AE0210-150 4 5
AE0210-151 4 5
AE0210-152 4 7
AE0210-153 15 4
AE0210-154 4 5
AE0210-157 15 5
AE0210-158 15 5
AE0210-159 15 4
AE0210-162 4
AE0210-163 4
AE0210-164 15 5
AE0210-165 15 4
AE0210-166 15 4
AE0210-168 15 4
AE0210-169 15 4
AE0210-170 4 5
AE0210-171 15 5
AE0210-172 4 5
AE0210-173 15 5
AE0210-174 4 5
AE0213-175 4 5
AE0213-176 4 7
AE0213-177 4 7
AE0213-178 4 5
AE0213-179 4 5
AE0213-180 4 7
AE0213-181 4 7
AE0213-182 4 5
AE0213-183 4 7
AE0213-186 4 7
AE0213-187 4 7
AE0213-190 4 5
AE0213-193 4 5
AE0213-194 4 5
AE0213-195 4 7
AE0213-196 4 7
AE0213-197 4 5
AE0213-198 4 5
AE0213-199 4 7
AE0213-200 4 7
AE0213-201 4 7
AE0213-202 4 7
AE0213-205 4 7
AE0213-206 4 7
AE0251-323 10 5
AE0251-325 5
AE0251-327 10 7
AE0251-329 10 7
AE0251-330 5 7
AE0251-331 5
AE0251-342 10 5
AE0251-343 10 5
AE0406-239 10 4
AE0406-254 10 5
AE0406-258 4
AE0406-259 4
AE0406-263 4 5
AE0406-264 10 4
AE0406-266 10 4
AE0406-271 10 7
AE0406-274 10 4
AE0406-278 4
AE0406-281 4
AE0406-286 4
AE0406-288 10 4
AE0406-289 10 4
AE0406-294 4
AE0406-298 4 5
Minneiska 10 7
NJ 303955 7
PRI 612-1 5 6
Arlet 4 7
Co-op 39 10 26
Pinova 10 5
Scired 6 7
Scifresh 5 7
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 10 5
0409-0033 10 5
0409-0047 10 5
G-14-050 5 7
G-14-052 10 7
G-14-054 10 25
G-14-055 10 25
G-14-056 5 7
G-14-057 25 5
G-14-059 25 5
G-14-060 10 7
G-14-061 10 7
G-14-062 10 25
G-14-064 10 25
G-14-065 10 7
G-14-069 25 5
G-14-067 10 7
G-14-068 10 25
G-14-071 10 7
G-14-073 10 7
G-14-074 10 7
G-14-075 10 7
G-14-076 25 5
G-14-077 5 7
G-14-078 5 7
G-14-080 10 25
G-09-232 4 7
G-09-233 4 7
G-09-234 4 7
G-09-235 4 7
G-09-236 4 5
G-09-237 4 5
G-09-238 4 7
G-09-239 4 7
G-09-240 4 5
G-09-241 4 5
G-09-242 4 7
G-09-243 4 7
G-09-245 4 7
G-09-246 4 5
G-09-258 4 5
G-09-259 4 5
G-09-260 4 7
G-09-261 4 5
G-09-262 4 5
G-09-263 4 7
G-09-264 4 5
G-09-265 4 5
G-09-266 4 5
G-09-267 4 7
G-09-268 4 7
0408-0021 5 7
Wijcik McIntosh 26 69
Priam 10 25
Northern Spy 10 5
Co-op 15 5 7
MN 1702 26 5
WA 2 5 7
WA 5 5 7
Pitmaston Pineapple 5
0411-0011 4 6
0411-0017 4 7
0411-0023 4 7
AE0250-086 5 7
AE0250-087 10 7
AE0250-089 5
AE0250-090 10 5
AE0250-092 10 5
AE0250-093 10 7
AE0250-094 5 7
AE0250-095 10 7
Sonya 5 7
Co-op 38 5 7
AE0250-096 10 7
AE0250-327 10 26
Co-op 30 6 7
Jonagrimes 4 6
AE0211-036 4 5
G-07-039 7
PRI 47-176 10 26
G-07-041 26 7
BC-8S-27-43 5 7
AE0250-091 10 5
AE0250-097 4 5
AE0250-325 4 7
AE0250-326 10 7
AE0250-329 4 5
AE0250-333 4 5
AE0250-334 4 7
AE0250-335 4 7
AE0250-336 10 7
AE0250-338 10 5
AE0250-341 4 5
AE0211-038 4 7
AE0211-043 4 5
AE0211-045 4 5
AE0211-051 4 7
G-07-010 26 4
G-07-014 14 26
G-07-015 14 7
G-07-019 14 26
G-07-020 4 7
G-07-024 26 4
G-07-032 4 7
G-07-033 4 7
G-07-034 26 4
G-07-035 14 7
G-07-044 14 26
AE0211-053 4 7
AE0211-054 4 7
AE0250-088 10 7
AE0250-324 4 7
AE0250-328 10 5
AE0250-331 10 5
AE0250-332 10 5
AE0250-337 4 7
AE0250-339 10 7
Minnewashta 5 7
Autumn Crisp 25 4
G-14-066 10 25
Lu1-11-010 5
Lu1-11-013 15 5
Lu1-11-016 5
Lu1-11-017 15 7
Lu1-11-018 15 7
NJ 90 14 15
Lord Lambourne 10
Antonovka GH 20 30
Grimes Golden 3 4
Kidds Orange Red 5 7
Malus baccata Hansen #2 4 73
Malus baccata Jackii 5
Summerred 9
William's Pride 25 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-05-25Apple-RosBREED-3.9K-2019552.5953.1
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879
RosBREEDSNP_SNP_CA_24525168_Lg5_01304_MAF30_1636386_exon1BBBBBA--BBBABBBA--BBBBABBABBBABBB-B-BBBBB-BBBB-BBBBBABBBBBBBAABBBAABBBAABABABB
RosBREEDSNP_SNP_CT_24392828_Lg5_AT11_MAF10_1662465_exon1--BBABABBAB-BBBBBBBABBBBBBB-BB---BBABBBABBB--B-BBBBBBB---BBBB--BBBBBBABB----BB
RosBREEDSNP_SNP_GA_24417621_Lg5_AT11_MAF30_MDP0000277380_exon1--BBBA--B---BA----ABBBABB---ABBBB-B---ABBBB--AB--BBAABBBBBBBBBAB-ABAABBABABAB-
RosBREEDSNP_SNP_GA_24528761_Lg5_01304_MAF40_1643253_exon1BABBABABAAABAAABABBAB--BABBABBBA----BB--AB-BAB-AABAAB-BAABBAABBAABBABBBBBB----
RosBREEDSNP_SNP_GT_24403609_Lg5_AT11_MAF20_1620320_exon1BABBBBBBABBBBBAB--BBBBBABBBBBB------BBBBBBBBAB-BBAABB-BABA--ABBAAABBABABBB----
RosBREEDSNP_SNP_TC_24622707_Lg5_01304_MAF50_1627174_exon3--BAABABB---AB----B--ABBBBA-AA----B--BBA--BAB--ABA---A------BBAABBBABABABBAB--
Alignments
Feature NameTypeLocationAnalysis
Chr05 chromosome Chr05:34588709..34910142. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation