Mdo-HB-05-14

Haplotype Block Overview

Name	Mdo-HB-05-14
Species	Malus x domestica
Stock Haplotype	[view all 422]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	20 21
Rome Beauty Law	3 9
Jonafree	5 9
Redfree	5 6
Spartan	4 9
Wagener	3 5
Worcester Pearmain	3
Tsugaru	3 5
Golden Delicious	3 4
Fuji	3 4
Empire	4 9
Gala	21 4
Honeycrisp	3 4
Elstar	3 5
Marshall McIntosh	3 9
Cripps Pink	3 4
Granny Smith	4 9
Jonathan	5 9
Ralls Janet	3
Delicious	4
Discovery	3 5
Prima	3 6
821	15
Fiesta	21 3
Ingrid Marie	20 5
Idared	3 9
Esopus Spitzenburg	20 9
Braeburn	21 4
Sansa	21 5
Lodi	26 3
James Grieve	20 4
Cripps Red	3 4
Burgundy	3
Akane	3 5
Ambrosia	4
Aurora Golden Gala	4
Beacon	6
Ben Davis	3 4 5
Cameo	4
Chinook	21 4
Clivia	20 21
Co-op 17	3 9
Co-op 18	13 66
Dayton	3 4 6 9
Delblush	3 4
Delcorf	40 5
Delorgue	5
Dolgo	3 47
Geheimrat Dr. Oldenburg	21 3
Duchess of Oldenburg	5 6
Early Cortland	3 5 9
Empress	6 9
F2 26829-2-2	4 9
Fantazja	66 9
Fireside	4 5
Fortune	21 4
Frostbite	6 9
Ginger Gold	26 3
GMAL 4327	3 5
GMAL 4328	3 5
GMAL 4329	3 5
GMAL 4332	3 5
Goodland	6
Haralson	3 6
Honeygold	4 6
Hudson	4
Jersey Black	3 36
Jonamac	9
Keepsake	4 6
Kerr	3
Lady Williams	3 9
Liberty	3 4
Linda	5 66
Liveland Raspberry	3 57
Longfield	20 81
Macoun	3
Malinda	3
Mantet	32 5
Melba	3 57
MN 1627	3 6
MN 1691	5 6
MN 1706	3 4
MN 1708	3 6
MN 1760	3
MN 1764	3
MN 1789	6
MN 1802	6
MN 1836	3 6
MN 1837	3 6
MN 1839	5 6
MN 1888	3 6
MN 1899	4 9
MN 1940	3 6
MN 2016	3 6
AA-44	3 9
Monroe	3 9
Montgomery	3
Nicola	4
NJ 31	9
NJ 53	3 5
Oriole	3 6
PRI 14-126	4 9
PRI 14-510	3 9
PRI 1661-2	3 4
PRI 54-12	4 6
PRI 855-102	5
Primula	3 9
Raritan	18 76
Regent	3 9
Russian Seedling	3 5
Sawa	3 9
Sciros	4
Sharon	6 9
Silken	3 6
Wildung	5 9
Splendour	4
State Fair	3 5
NJ 55	21 4
Co-op 29	4 9
Sunrise	3 9
Sweet Sixteen	4 9
Topaz	3 4
Vista Bella	3 6
Wealthy	5 6
Winesap	3 4
Winter Banana	3 77
Yellow Newtown	3 9
Yellow Transparent	26 39
0407-0001	3 4
0407-0005	3 4
0407-0006	3 4
0407-0007	3 4
0407-0008	3 4
0408-0003	3 4
0408-0004	3 4
0408-0005	3 4
0408-0007	3 4
0408-0008	3 4
0408-0010	3 4
0408-0011	3 4
0408-0014	4
0408-0015	3 4
0409-0022	4
0409-0024	3 4
0409-0028	3 4
0409-0030	3 4
0409-0032	4
0409-0035	3 4
0409-0036	3 4
0409-0038	4
0409-0039	3 4
0409-0040	4
0409-0043	4
0409-0045	3 4
0410-0002	4 9
0410-0003	4 9
0410-0005	4 9
0410-0006	4 9
0410-0010	4 9
0410-0011	4 9
0410-0012	4 9
0410-0013	4 9
0410-0015	4
0410-0017	4
0410-0018	4
0414-0010	3 4
0414-0015	3
0414-0017	3
0414-0018	3
0414-0019	3 4
0414-0020	3 4
0414-0021	3 4
0415-0001	4
0415-0004	3
0415-0005	4
0415-0011	4
0415-0012	3
0415-0013	3 4
0415-0014	21 4
0415-0016	3 4
0415-0017	4
0415-0019	3
0415-0020	3 4
0415-0025	3 4
AE_HCxJonf-145	4 9
AE_HCXJonf-148	3 9
AE_HCXJonf-162	4 5
AE_HCXJonf-168	4 9
AE_HCxJonf-175	3 9
AE_HCxJonf-183	3 9
AE0118-237	3
AE0118-238	3 4
AE0118-239	4 5
AE0118-240	3 4
AE0118-243	3 4
AE0118-244	3 4
AE0118-245	3
AE0118-246	3
AE0118-249	3 4
AE0206-159	21 6
AE0206-160	21 6
AE0206-161	4 6
AE0206-162	4 6
AE0206-163	3 4
AE0206-164	21 6
AE0206-165	21 6
AE0206-167	3 4
AE0206-168	21 3
AE0206-169	21 6
AE0206-170	4 6
AE0210-146	5 9
AE0210-147	5 9
AE0210-149	5 9
AE0210-150	3 5
AE0210-151	3
AE0210-152	3 6
AE0210-153	3 9
AE0210-154	3
AE0210-157	5 9
AE0210-158	3 5
AE0210-159	3 9
AE0210-162	3 5
AE0210-163	3
AE0210-164	5 9
AE0210-165	3 9
AE0210-166	3
AE0210-168	3 9
AE0210-169	3 9
AE0210-170	5 9
AE0210-171	5 9
AE0210-172	3 5
AE0210-173	5 9
AE0210-174	3 5
AE0213-176	26 5
AE0213-177	3 5
AE0213-178	3
AE0213-180	3 5
AE0213-181	3 5
AE0213-182	3
AE0213-183	3 5
AE0213-186	3 5
AE0213-187	26 5
AE0213-193	3
AE0213-194	3
AE0213-195	26 5
AE0213-196	3 5
AE0213-197	3
AE0213-198	3
AE0213-199	3 5
AE0213-200	26 5
AE0213-201	3 5
AE0213-202	3
AE0213-205	26 5
AE0213-206	26 5
AE0251-323	4 9
AE0251-325	4 9
AE0251-327	21 4
AE0251-329	4
AE0251-330	21 9
AE0251-331	4
AE0251-342	21 4
AE0251-343	4
AE0406-239	3 4
AE0406-254	4 6
AE0406-258	3
AE0406-259	3
AE0406-264	3 4
AE0406-266	3 4
AE0406-271	4
AE0406-274	3 4
AE0406-278	3
AE0406-281	3
AE0406-286	3 6
AE0406-288	3 4
AE0406-289	3 4
AE0406-294	3
AE0406-298	3 6
Minneiska	4 6
NJ 303955	21
PRI 612-1	4
Arlet	3
Co-op 39	67 68
Pinova	20 4
Scired	21 4
Scifresh	21 4
0409-0025	3 4
0409-0026	3 4
0409-0027	3 4
0409-0031	4
0409-0033	4
0409-0047	4
G-14-050	3 4
G-14-052	20 3
G-14-054	20 3
G-14-055	20 3
G-14-056	20 3
G-14-057	3 4
G-14-059	3 4
G-14-060	20 3
G-14-061	20 3
G-14-062	20 3
G-14-064	20 3
G-14-065	20 3
G-14-069	3 4
G-14-067	20 3
G-14-068	20 3
G-14-071	20 3
G-14-073	20 3
G-14-074	20 3
G-14-075	20 3
G-14-076	3 4
G-14-077	3 4
G-14-078	3 4
G-14-080	20 3
G-09-232	21 3
G-09-233	21 26
G-09-234	21 3
G-09-235	21 3
G-09-236	26 4
G-09-237	26 4
G-09-238	21 26
G-09-239	21 26
G-09-240	26 4
G-09-241	3 4
G-09-242	21 26
G-09-243	21 26
G-09-245	21 26
G-09-246	21 26
G-09-258	26 4
G-09-259	26 4
G-09-260	21 3
G-09-261	26 4
G-09-262	3 4
G-09-263	21 3
G-09-264	26 4
G-09-265	3 4
G-09-266	3 4
G-09-267	3 4
G-09-268	21 3
0408-0021	3 4
Wijcik McIntosh	17 18
Beauty of Bath	5 65
Priam	9
Northern Spy	3 4
Co-op 15	3 4
MN 1702	4 9
WA 2	21 4
WA 5	3 4
Pitmaston Pineapple	3
0411-0011	3
0411-0017	3 4
0411-0023	3
AE0250-086	21 9
AE0250-087	4
AE0250-089	4 9
AE0250-090	4
AE0250-092	4
AE0250-093	21 4
AE0250-094	21 9
AE0250-095	4
Sonya	21 4
Co-op 38	3 4
AE0250-096	6 9
AE0250-327	5 9
Co-op 30	3 4
Jonagrimes	3 5
AE0211-036	3
G-07-039	3 5
PRI 47-176	4 5
G-07-041	3 5
BC-8S-27-43	21 4
AE0250-091	3 5
AE0250-097	3
AE0250-325	3
AE0250-326	3 4
AE0250-329	3 5
AE0250-333	4 5
AE0250-334	3 4
AE0250-335	3
AE0250-336	3 4
AE0250-338	3 4
AE0250-341	3 5
AE0211-038	3 5
AE0211-043	3
AE0211-051	26 5
G-07-010	5 9
G-07-014	21 4
G-07-015	21 4
G-07-019	5 9
G-07-020	21 9
G-07-024	5 9
G-07-032	21 9
G-07-033	21 9
G-07-034	21 4
G-07-035	5 9
G-07-044	5 9
AE0211-053	26 6
AE0211-054	3 6
AE0250-088	4 6
AE0250-324	3 6
AE0250-328	3
AE0250-331	3 4
AE0250-332	3 4
AE0250-337	3 6
AE0250-339	3 4
Minnewashta	3 6
Autumn Crisp	3
G-14-066	20 3
Lu1-11-010	4
Lu1-11-013	3 4
Lu1-11-016	4
Lu1-11-017	3 4
Lu1-11-018	3
NJ 90	10 4
Lord Lambourne	3 4
Antonovka GH	78 79
Grimes Golden	3
Kidds Orange Red	21 4
Malus baccata Hansen #2	3 5
Malus baccata Jackii	80 82
Summerred	3 84
William's Pride	4 9

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-05-14	Apple-RosBREED-3.9K-2019	5	70.12	70.12

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89
GDsnp01151	A	A	B	A	null	null	A	null	null	B	A	A	null	A	B	A	null	B	null	A	B	-	A	A	null	-	-	null	A	-	-	-	-	-	A	null	null	A	A	-	A	A	null	-	A	A	A	A	B	null	A	-	-	-	-	null	null	A	-	-	-	B	A	null	null	null	null	-	A	null	A	-	A	B	null	null	null	A	A	A	A	A	null	null	-	-	null	A
RosBREEDSNP_SNP_AC_7085646_Lg5_01151_MAF30_1655896_exon1	-	A	A	A	B	B	A	B	B	A	A	A	-	-	A	B	A	-	A	B	-	A	B	A	A	-	-	-	-	B	-	-	A	A	-	-	A	A	-	B	-	B	A	A	-	-	-	-	-	B	A	-	-	-	-	-	-	-	A	B	B	A	A	A	B	B	B	A	B	B	A	-	-	B	B	B	A	A	A	B	A	A	B	-	A	B	A	B
RosBREEDSNP_SNP_GA_7097872_Lg5_01151_MAF30_MDP0000247378_exon23	-	B	B	B	B	B	B	A	A	B	B	A	-	-	B	A	B	-	A	A	-	B	A	A	A	-	-	A	B	A	-	-	A	B	-	-	A	B	-	B	-	-	-	B	-	-	-	-	-	B	B	A	B	-	-	-	-	-	A	A	A	A	B	A	B	B	A	A	-	-	-	A	B	B	A	A	B	A	B	B	A	B	B	B	B	A	B	-
RosBREEDSNP_SNP_TC_7087864_Lg5_01151_MAF20_480759_exon1	A	A	A	B	B	B	A	A	-	-	A	B	-	-	B	A	A	A	A	B	A	A	A	null	null	A	B	A	A	A	-	-	-	-	B	B	-	-	A	B	A	-	-	B	B	B	A	-	-	A	B	A	A	B	A	B	A	B	null	-	B	A	B	A	A	B	A	A	B	A	B	B	B	A	B	B	B	A	B	B	B	A	B	B	A	B	B	A
RosBREEDSNP_SNP_TC_7089884_Lg5_01151_MAF10_1634546_exon3	-	A	A	A	B	-	-	A	A	A	B	A	-	-	A	A	A	A	A	A	-	A	A	A	A	A	A	A	A	A	B	A	A	A	-	-	A	A	-	B	-	-	-	A	-	B	A	-	-	-	-	A	A	-	-	B	A	A	A	A	A	A	-	-	A	A	B	A	A	A	A	A	A	A	B	A	A	A	B	A	B	-	-	B	-	-	A	-
RosBREEDSNP_SNP_TG_7110030_Lg5_01151_MAF10_729382_exon1	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	-	A	B	B	A	A	-	A	A	-	-	A	A	A	A	-	-	A	A	A	A	A	B	A	-	-	A	A	A	A	B	A	A	B	A	A	A	A	A	B	A	A	A	-	-	A	A	B	B	B

Alignments

Feature Name	Type	Location	Analysis
Chr05	chromosome	Chr05:41920830..41947088.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation